BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10610.1
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487894 jgi|Araly1|487894|fgenesh2_kg.6__1028__AT5G10600.1 2348 0.0
> Ahg487894 jgi|Araly1|487894|fgenesh2_kg.6__1028__AT5G10600.1
Length=1703
Score = 2348 bits (1271), Expect = 0.0
Identities = 1469/1565 (94%), Gaps = 12/1565 (1%)
Strand=Plus/Plus
Query 1 AAAAAAGGAAAATGGAAGACCTCTGGTTCATCTTCTTCTCCTTCCTCACAGCTACTTTAA 60
||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |
Sbjct 145 AAAAAAGGAAAATGGAAAATCTCTGGTTCATCTTCTTCTTCTTCCTCACAGCTACTTTGA 204
Query 61 TCTTCTTCATCACCAAGAAGTTCCTGTGGAGTCTAAATTCTAAATTACCTCCAAGCCCTA 120
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 205 CCTTCTTCATCACCAAGAAGTTCCTGTGGAGCCTAAACTCTAAATTACCTCCAAGCCCTA 264
Query 121 CGCCTCTCCCTATCATCGGCCATCTTCACCTCATCAAGAAGTATCCTTTACCACAAGCTC 180
|||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 265 CGCCACTTCCGATCATCGGTCATCTTCACCTCATCAAGAAGTATCCTTTACCACAAGCTC 324
Query 181 TACGTCATCTCTCTTCAAACTACGGCCCGGTTCTGTTCCTCAAATTTGGATGCCGTAACG 240
||| ||||||||||||||||||||| || ||||||||||||||||| || |||||| ||
Sbjct 325 TACATCATCTCTCTTCAAACTACGGACCAGTTCTGTTCCTCAAATTCGGGTGCCGTGCCG 384
Query 241 TTTTGACTCTCTCTTCTCCAGATTCCATCGAAGAATGCTTCACCAATCACGACGTAACCC 300
||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 TTTTGACCCTTTCTTCTCCAGATTCCATCGAAGAATGCTTCACCAATCACGACACAACCC 444
Query 301 TCGCGAATCGTCCCAAGACCATCACCTCCGATCACTTCAGCTACGGCTATAAAAACTTTG 360
| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 445 TTGCTAATCGTCCCAAGACCATCACCTCCGATCACTTCAGCTACGGCTACAAAAACTTCG 504
Query 361 GATTTGCTCCTTACGGTGACCTCTGGCGAACTCTCCGTCGTCTCTCCACTCTCGAGGTCT 420
||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 505 GATTTGCTCCTTATGGCGATCTCTGGCGAACTCTCCGACGTCTCTCCACTCTCGAGGTCT 564
Query 421 TCTCCTCCGCT-AGCCTGCAGAAGAACT-CTTCCATCCGAAACGAGGAAGTCTCCAAC-C 477
||||||||| | ||||| |||||||| | ||| ||| ||||| || ||||| ||| || |
Sbjct 565 TCTCCTCCG-TCAGCCTACAGAAGAA-TGCTTACATACGAAATGAAGAAGTGTCC-ACTC 621
Query 478 TCTGTTTGATTATCTTCAGATTATCCCGTGACTCTCGGATAGTGGATCTCAAGTATCAAT 537
|||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 622 TCTGTTCGAATCTCTTCAGATTATCCCGTGACTCTCGGAGAGTGGATCTCAAGTATCAAT 681
Query 538 TCACTCTTCTCACGGCTCATATCATGCTTAGATTAGTATCTGGGAAGCGTGGGGTCAAAA 597
||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| ||
Sbjct 682 TCACTCTTCTCACAGCTCATGTCATGCTTAGATTAGTGTCTGGGAATCGTGGGGTCGAAG 741
Query 598 AGAGCGATCCCGAATCAGAGAAGAGGTTCTTGGATGATTTTAAATTGAGGTTTTTCTCGA 657
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 742 AGAGCGATCCGGAATCAGAGAAGAGGTTCTTGGATGATTTCAAATTGAGGTTTTTCTCGA 801
Query 658 GCATGTCGATGAATGTCTGCGACT-ATTTTCCAGTGTTGAGGTGGATTGGGTACAAAGGT 716
||||||||||||||||||| || | |||| ||||||||||||||||||||||||||||||
Sbjct 802 GCATGTCGATGAATGTCTGTGA-TCATTTCCCAGTGTTGAGGTGGATTGGGTACAAAGGT 860
Query 717 TTGGAGAAGAGAGTGATTGATATGCAGAGAATGAGAGATGAGTATCTTCAGCGACTCATT 776
||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 861 CTGGAGAAGAGAGTGATTGAGATGCAGAGGATGAGAGATGAGTATCTTCAGCGTCTCATT 920
Query 777 GATGATATTCGAATGAAGAACA-TTGATTCCTCTGGTTC-CGTAGTAGAGAAATTCTTGA 834
|||||||||||||||||||| | |||||||| ||||||| | ||||||||||||||||||
Sbjct 921 GATGATATTCGAATGAAGAA-ATTTGATTCCACTGGTTCAC-TAGTAGAGAAATTCTTGA 978
Query 835 AGCTTCAAGAATCAGAACCTGAATTTTACGCAGATGATGTTATCAAAGGAATCATAGTGC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 979 AGCTTCAAGAATCAGAACCTGAATTTTACGCAGATGATGTTATCAAAGGAATCGTAGTAC 1038
Query 895 TAATGTTCAATGGCGGAACGGATACATCACCTGTGGCAATGGAATGGGCAGTGTCACTTT 954
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 1039 TAATGTTCAACGGCGGAACGGATACTTCACCTGTGGCAATGGAATGGGCAATGTCGCTTT 1098
Query 955 TACTAAACCATCCAGATAAGCTTGAGAAGCTCAGAGAAGAAATCAAATCTAATGTTAAAC 1014
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TACTGAACCATCCAGATAAGCTTGAGAAGCTCAGAGAAGAAATCAAATCTAATGTTAAAC 1158
Query 1015 ACAAAGGGCTTATACAAGACTCGGATCTCTCGAGCTTACCTTATCTTCGATGTGTCATCT 1074
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1159 ACAAAGGGCTTATACAAGACTCGGATCTCTCGAGCTTACCTTATCTCCGATGTGTCATCT 1218
Query 1075 ATGAGACGCTTAGGCTATACCCTGCAGCTCCACTCTTGCTTCCTCACTGCTCATCCAAGA 1134
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 ATGAGACGCTTAGGCTATATCCTGCAGCTCCACTCTTGCTTCCTCACTGCTCATCCAAGA 1278
Query 1135 GATTCAACTTAGGCAACTACGAGATTCCAGAAAACATAATGTTATTGGTGAATGCTTGGG 1194
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1279 GATTCAACTTAGGCAACTACGAGATTCCTGAAAACACGATGTTATTGGTGAATGCTTGGG 1338
Query 1195 CTGTTCATAGGGACGGTGAGCTTTGGGAAGAAGCCAATGTTTTCAAGCCGGAGAGATTTG 1254
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1339 CTGTTCATAGGGACGGTGAGCTTTGGGAAGAAGCTGATGTTTTCAAGCCGGAGAGATTTG 1398
Query 1255 AAGGGTTTGTTGGCGATAGAGATGGTTTTAGGTTTCTGCCATTTGGAGTTGGGAGGCGGG 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1399 AAGGGTTTGTTGGCGATAGAGATGGTTTTAGGTTTCTGCCATTTGGAGTTGGAAGGCGGG 1458
Query 1315 CGTGTCCTGCAGCTGGACTTGGAATGAGGGTAGTGTCGCTTGCTGTTGGAGCATTGGTTC 1374
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1459 CGTGTCCTGCAGCTGGACTTGGAATGAGGGTAGTGGCGCTTGCTGTTGGGGCATTGGTTC 1518
Query 1375 AGTGTTTTGAGTGGGAGAAGGTAGAAGCAGGAGATATAGACATGAGGCCCGTGTTTGGTG 1434
|||||||||||||||| |||||||||| |||||| ||||| |||||||| ||||||||||
Sbjct 1519 AGTGTTTTGAGTGGGAAAAGGTAGAAGAAGGAGACATAGATATGAGGCCTGTGTTTGGTG 1578
Query 1435 TGGCAATGGCTAAGGCTGAGCCGCTTGTCGCATTGCCGAAGCCATGGTCTGAAATGGTTC 1494
||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||||
Sbjct 1579 TGGCAATGGCTAAGGCTGAGCCGCTTGTCGCATTGTCTAAGCCATGGCCCGAAATGGTTC 1638
Query 1495 CTATCTTGTCTCAGCTCTAGTGTCATCTGTGTTAGCCAAGAAATTTGATTTAGAGGATGC 1554
|||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 1639 CTATCTTGTCTCAGCTCTAGTGTCATCTGTTTTGGCCAAGAAAGTTGATTTAGAGGATGC 1698
Query 1555 TTTTT 1559
|||||
Sbjct 1699 TTTTT 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60639670040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5