BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10620.1
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487896 jgi|Araly1|487896|fgenesh2_kg.6__1030__AT5G10620.1 1066 0.0
> Ahg487896 jgi|Araly1|487896|fgenesh2_kg.6__1030__AT5G10620.1
Length=705
Score = 1066 bits (577), Expect = 0.0
Identities = 671/715 (94%), Gaps = 12/715 (2%)
Strand=Plus/Plus
Query 16 ATGGCCAATTCTCACCTGAATCAGCCATATGCATCTGCTTCTCCTACTCCTCAGGAAAAA 75
||||||| |||||| ||||| ||| |||||||||||||||||||||| ||||||||| |
Sbjct 1 ATGGCCATTTCTCAATTGAATAAGCTATATGCATCTGCTTCTCCTACTTCTCAGGAAACA 60
Query 76 GGAAGAACTTGTAGATACGCGGGTCAAGCAGTGAGAGCTCTTCCTATACGAGTAATAACA 135
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAAGAACGTGTAGATACGCGGGTCAAGCAGTGAGAGCTCTTCCTATACGAGTAATAACA 120
Query 136 GTGGGGAAAAAGAGATCAGAAGGTGTTCGACTCTTGGTCGATGAATACAAAATCAAGCTT 195
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 GTTGGGAAAAAGAGATCAGAAGGTGTTCGACTCTTGGTCGATGAATACAAAAACAAGCTT 180
Query 196 AAACCTTACTGTTCCTTTGAAGATTCATTGGTTCGCTCCAATCCTCGAAATGCTCAGGAT 255
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACCTTATTGCTCCTTTGAAGATTCATTGGTTCGCTCCAATCCTCGAAATGCTCAGGAT 240
Query 256 GTTAGAGCTCAGGTCGAGGATGAAGAAGTGGCTATGATGAAGCTTATTGGGTCTGATGAT 315
|||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 241 GTTAGAGCCCAGGTTGAGGATGAAGAGGTGGCTATGATGAAGATTATTGGGTCTGATGAT 300
Query 316 TGGGTTGTGGTGCTTGACGAGAGAGGCCGCGACATTGATTCAGAG-CAGATGGCTGAGTT 374
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 301 TGGGTTGTGGTGCTTGACGAGAGAGGCCGTGACATTGATTCAGAGGCA-ATGGCTGAGTT 359
Query 375 ACTTGGGGATGCAGGAAACAGTGGAGCTTCGCGGATCTCGTTTTGTATAGGTGGAGCTTA 434
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACTAGGGGATGCAGGAAATAGTGGAGCTTCGCGGATCTCGTTTTGTATAGGTGGAGCTTA 419
Query 435 CGGACATGGAACG-CAAGTGAGGAAGCGAGCTAATGTGACCATTAGACTTTCCTCCATGG 493
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 TGGACATGGAA-GACAAGTGAGGAAGCGAGCGAATGTGACCATTAGACTTTCCTCCATGG 478
Query 494 TCCTGAATCATCAGATAGCTCTTGTGGTGCTCATGGAACAGCTTTACAGGTCATGGACTA 553
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TCCTGAATCATCAGATTGCTCTTGTGGTGCTGATGGAACAGCTTTACAGGTCATGGACTA 538
Query 554 TTCTCAAGGGACAAAATTACCATCACTGATGAGGCATGAATCTCTACTTTTTGGGATTTC 613
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |
Sbjct 539 TTCTCAAGGGACAAAACTACCATCACTGATGATGCATGAATCTCTACTTTTTGG--TTGC 596
Query 614 TTTTGCTCTATCGTGTACAAAGAAACTGCATTGCTAAAAAGCTTCTCTGCTGGTAGTTGT 673
||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 597 TTT------ATCGTGTACAAAGAAGCTGCATTGCTAAAAAGCTTCTCTGCTGATAGTTGT 650
Query 674 ATGAGAAATTGTTTATTGTACGACGTATGTTTGCAATCCAAATTTGTTTGCTTCT 728
|||||||||||| |||||||||||| | |||||| ||||||||||||||||||||
Sbjct 651 ATGAGAAATTGTATATTGTACGACGGAAGTTTGCTATCCAAATTTGTTTGCTTCT 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26800410651
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5