BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10620.1 Length=728 Score E Sequences producing significant alignments: (Bits) Value Ahg487896 jgi|Araly1|487896|fgenesh2_kg.6__1030__AT5G10620.1 1066 0.0 > Ahg487896 jgi|Araly1|487896|fgenesh2_kg.6__1030__AT5G10620.1 Length=705 Score = 1066 bits (577), Expect = 0.0 Identities = 671/715 (94%), Gaps = 12/715 (2%) Strand=Plus/Plus Query 16 ATGGCCAATTCTCACCTGAATCAGCCATATGCATCTGCTTCTCCTACTCCTCAGGAAAAA 75 ||||||| |||||| ||||| ||| |||||||||||||||||||||| ||||||||| | Sbjct 1 ATGGCCATTTCTCAATTGAATAAGCTATATGCATCTGCTTCTCCTACTTCTCAGGAAACA 60 Query 76 GGAAGAACTTGTAGATACGCGGGTCAAGCAGTGAGAGCTCTTCCTATACGAGTAATAACA 135 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGAAGAACGTGTAGATACGCGGGTCAAGCAGTGAGAGCTCTTCCTATACGAGTAATAACA 120 Query 136 GTGGGGAAAAAGAGATCAGAAGGTGTTCGACTCTTGGTCGATGAATACAAAATCAAGCTT 195 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 GTTGGGAAAAAGAGATCAGAAGGTGTTCGACTCTTGGTCGATGAATACAAAAACAAGCTT 180 Query 196 AAACCTTACTGTTCCTTTGAAGATTCATTGGTTCGCTCCAATCCTCGAAATGCTCAGGAT 255 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAACCTTATTGCTCCTTTGAAGATTCATTGGTTCGCTCCAATCCTCGAAATGCTCAGGAT 240 Query 256 GTTAGAGCTCAGGTCGAGGATGAAGAAGTGGCTATGATGAAGCTTATTGGGTCTGATGAT 315 |||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 241 GTTAGAGCCCAGGTTGAGGATGAAGAGGTGGCTATGATGAAGATTATTGGGTCTGATGAT 300 Query 316 TGGGTTGTGGTGCTTGACGAGAGAGGCCGCGACATTGATTCAGAG-CAGATGGCTGAGTT 374 ||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct 301 TGGGTTGTGGTGCTTGACGAGAGAGGCCGTGACATTGATTCAGAGGCA-ATGGCTGAGTT 359 Query 375 ACTTGGGGATGCAGGAAACAGTGGAGCTTCGCGGATCTCGTTTTGTATAGGTGGAGCTTA 434 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ACTAGGGGATGCAGGAAATAGTGGAGCTTCGCGGATCTCGTTTTGTATAGGTGGAGCTTA 419 Query 435 CGGACATGGAACG-CAAGTGAGGAAGCGAGCTAATGTGACCATTAGACTTTCCTCCATGG 493 |||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 420 TGGACATGGAA-GACAAGTGAGGAAGCGAGCGAATGTGACCATTAGACTTTCCTCCATGG 478 Query 494 TCCTGAATCATCAGATAGCTCTTGTGGTGCTCATGGAACAGCTTTACAGGTCATGGACTA 553 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 479 TCCTGAATCATCAGATTGCTCTTGTGGTGCTGATGGAACAGCTTTACAGGTCATGGACTA 538 Query 554 TTCTCAAGGGACAAAATTACCATCACTGATGAGGCATGAATCTCTACTTTTTGGGATTTC 613 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || | Sbjct 539 TTCTCAAGGGACAAAACTACCATCACTGATGATGCATGAATCTCTACTTTTTGG--TTGC 596 Query 614 TTTTGCTCTATCGTGTACAAAGAAACTGCATTGCTAAAAAGCTTCTCTGCTGGTAGTTGT 673 ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 597 TTT------ATCGTGTACAAAGAAGCTGCATTGCTAAAAAGCTTCTCTGCTGATAGTTGT 650 Query 674 ATGAGAAATTGTTTATTGTACGACGTATGTTTGCAATCCAAATTTGTTTGCTTCT 728 |||||||||||| |||||||||||| | |||||| |||||||||||||||||||| Sbjct 651 ATGAGAAATTGTATATTGTACGACGGAAGTTTGCTATCCAAATTTGTTTGCTTCT 705 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26800410651 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5