BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10650.1
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487900 jgi|Araly1|487900|fgenesh2_kg.6__1034__AT5G10650.2 2704 0.0
Ahg489350 jgi|Araly1|489350|fgenesh2_kg.6__2484__AT5G24870.1 488 6e-137
> Ahg487900 jgi|Araly1|487900|fgenesh2_kg.6__1034__AT5G10650.2
Length=1965
Score = 2704 bits (1464), Expect = 0.0
Identities = 1742/1874 (93%), Gaps = 28/1874 (1%)
Strand=Plus/Plus
Query 69 GGAAAGTGTTTCTTTGATTCATGGATGGATGTGCTGGTAAACGATCTGTTGACCGGTTGG 128
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 99 GGAAAGTGTTTCTTTGATTCATGGATGGATGTGCGGGTAAACGATCTGTTGACCGGTTGG 158
Query 129 TTGTGCCTCGGAAAGCCAGTGGTCTTACCCTGCGTGAGAATATGAACAAGACAGATGGTA 188
|||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 159 TTGTGCCTCGGAAAGCTACTGGTCTTATCCTGCGTGACAATATGAACAAGACAGATGGTA 218
Query 189 AGAATGTTCCTTTCTGCAGCCGAGTTGGTTGTACTGCAAAGGTAACTTCTACCAAGAGAT 248
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 219 AGACTGTTCCTTTCTGCAGCCGAGTTGGTTGTAGTGCAAAGGTAACTTCTACCAAGAGAT 278
Query 249 CTCGGATTGGCTCTACGGATAACAATACAAAAGTTGGTCTGCCTCCGGTTCCATCTACCT 308
| ||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||| |||
Sbjct 279 CCCGGATTGGCTCTACGGACAACAATTCAAAAGTTGCTCTGCCTCCGGTTCCCTCTTCCT 338
Query 309 TAAATAGAAAGGAAATTGTTGGGAGCTCATCTCGTACTCCTGGTGGATTTGGATACTTGA 368
| || ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 339 CACATGGAAAGGAAATTGTTGGGAGTTCATCTCGAACTCCTGGTGGATTTGGATACTTAA 398
Query 369 GAAAGCCAGCCAAAGTTACTGCAAGAAGACAGCCGTCATCTAGTTTAGACACTGAATCTT 428
||||| |||||||||||||| | |||||| |||||||||||||||||||||| |||||||
Sbjct 399 GAAAGACAGCCAAAGTTACTCCCAGAAGAAAGCCGTCATCTAGTTTAGACACAGAATCTT 458
Query 429 CGGAAACGAGTTGTATTCATGATGATCCAGCTGCAACAGAGCCCACACTTCCACGCCAAA 488
|||||| || | |||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 459 CGGAAAAGACTAGTATTCATTATGATCCAGCTGCAACAGAGCCTACACTTCCACGCCAAA 518
Query 489 AGACTAAAAGAGTCACAATCAATGTTCATCCTCAAAGCGCTGTCTCTAGAGAAGTTGTAA 548
|||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 519 AGACTAAAAGAGGCACAATCAATGTTCATCCTCAAAGCGCTTTCTCTGGAGAAGTCGTGT 578
Query 549 TAACAAAGGCAGGAAGCTCAAGTAGAGGAACCAGCAGAATTAGTCATCCA-AAGTCTGAA 607
| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 579 TGACAAAGGCAGGAAGCTCAAGTAGAGGAACCAGCAGAAGTAGTCAT-CAGAAGTCTGAA 637
Query 608 TTGGGTACCCGCGATGCTCTGACGGGTCCTTCTGTTTCTACATCTTCTGGTAACAGTGAG 667
||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 638 TTGGGCACCCGAGATACTCTGACGGGTCCTTCTGTTTCTACATCTTCTGATAACAGCGAG 697
Query 668 CACACTGTAAGAGGCGGTTTGAGTAGGCATAGATTGAGGAACTTGAGCTGCAATTCTGTG 727
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 698 CACACTGTAAGAGGCGGTTTGAGCAGGAATAGATTGAGGAACTTGAGGTGCAATTCTGTG 757
Query 728 TCTGATGTTCTTCCAACTAACTCAAACTCAGCAACAAAAATCAGTGTGACTAAAAAGAA- 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TCTGATGTTCTTCCAACTAACTCAAACTCAGCAACAAAAATCAGTGTGACTAAAAAGAAG 817
Query 787 AAA--CGCTGATGGAGAGAGCAGCTTATCTAGCAAAGGTAGTAAGACTAGTGTGTTGGTT 844
||| | |||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 818 AAAAACTCTGATGGAGAGAGCAGCTCCTCTAGCAAAGGCAGTAAGACTTGTGTGTTGGTA 877
Query 845 CCAAAGGTAAGGAATCAAATTTCTTCTCATGGCAATGGCGTCACAGTTTCTGATAACAGA 904
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 878 CCAAAGGTAAGGAGTCAAATTTCTTCTCATGGCAATGGCATCACAGTTTCTGATAACAGA 937
Query 905 AGAAATCGAGTAGTACCAAGTATTAGGGACAGCAGTACTGTTGTTTCAAATGGTTGTAGG 964
||||||||| |||||||||||||||||||||||||| |||| |||| |||| |||||
Sbjct 938 AGAAATCGAATAGTACCAAGTATTAGGGACAGCAGT---GTTGGTTCAGGTGGTGGTAGG 994
Query 965 AGAGCTGGTTATTTTGGTAGATCAGAGCGACTTGGAGCTACTGCATCCTCTGCTACTTCT 1024
||| |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 995 AGATCTGGTTATATTGGTAGATCAGAGCAACTTGGAGCTGTTGCATCCTCTGCTACTTCT 1054
Query 1025 CGACAAATGCCTCATCCTACAACACCAACCGATCCCAATCCTTCTCTTTCGTTTTGTCCA 1084
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1055 CGACAAATGCCTCACCCTGCAACACCAACTGATCCCAATCCTTCTCTTTCGTTTTTTCCA 1114
Query 1085 TCAAATA--TA---TA--C-A----GTAGTACTGGACGCGTACATAGCAATATGCCTGGT 1132
||| ||| || || | | ||||||||||||| |||||||||| |||||||||
Sbjct 1115 TCAGATAGATACAGTAGGCCAAACAGTAGTACTGGACGTGTACATAGCACGATGCCTGGT 1174
Query 1133 AGCCCCACGGAAGCTGACCCTTCAAGCTCTTTGGTGAACCGGGATGGTTTGAGTCACTAC 1192
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1175 AGCCCCACGGAAGCTGACCCTTCAAACTCTTTGGTGAACCGGGATGGTTTGAGTCACTAC 1234
Query 1193 AACATGAATGGAATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACATGATGAAGAG 1252
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 AACATGAATGGTATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACATGATGAAGAG 1294
Query 1253 CTTACATATGAGCAACTGGCTTCTATAGAGACCAATCTATTCTCAAGTGGTATGTTCAGA 1312
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1295 CTTACATATGAGCAACTGGCTTCTTTGGAGACCAATCTATTCTCAAGTGGTATGTTCAGA 1354
Query 1313 TTCTATGATCAGCATAGAGATATGAGGCTTGACATCGATAACATGTCATATGAGGAGTTA 1372
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1355 TTCTACGATCAGCATAGAGATATGAGGCTTGACATTGATAACATGTCATATGAGGAACTA 1414
Query 1373 CTAGCTTTGGGGGATAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGAAGCACTCTCA 1432
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CTAGCTTTGGGGGAGAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGAAGCACTCTCG 1474
Query 1433 AGAAGCCTTAAGCAAAGCATTTATCAGGAGACAGATGAAACCGGTTCCATCTCTCTGTA- 1491
|||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||| |
Sbjct 1475 AGAAGCCTCAAGCAAAGCACTTATCAGAAGACAGATGAAACCGGTTCCATTTCTCTG-AG 1533
Query 1492 TAAGGATGATGATATCAAGTGCAGTATTTGCCAGGAAGAGTATGTTGATGGAGATGAATT 1551
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1534 TAAGGAAGATGATGTCAAGTGCAGTATTTGCCAGGAAGAGTATGTTGATGGAGATGAAGT 1593
Query 1552 AGGGACTATTCCATGTCAACATATGTACCATGTGAGCTGTGTACAACAATGGCTGCGGAT 1611
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1594 AGGGACTATGCCATGTCAACATATGTACCATGTGAGCTGTGTACAACAATGGTTGCGGAT 1653
Query 1612 GAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAAGAAGAGAAGTCGATTT-AGTGAA 1670
||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||
Sbjct 1654 GAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAAGAGGAGAAATC-ATTTTAGTGAA 1712
Query 1671 TAATGCCAACAGCAGTTTTAGCTTTGTGGGATGATTCCAAGATGATGCAGATACATTGCT 1730
||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1713 TAATGCCAACACCAGTTTTAGGTTTGTGGGATGACTCCAAGATGATGCAGATACATTGCT 1772
Query 1731 ATTT-TCTTCACCAAGTGCTTGTCTCTACATCATCTTGCTCTCTCT-TCTCTTTTCTTTT 1788
||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1773 -TTTGTCTTCACAAAGTGCTTGTCTCTACATCATCTTGCTCTCTCTCTCTCTTTTCTTTT 1831
Query 1789 GTACATATAACAGTATCTTTCTTTTGACCTAATTGGGTACAAATGGGTAAATAAGATCAG 1848
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1832 GTACATATAACAATATCTTTCTTTTGACCCAATTGGGTACAAATGGGTAAATAAGATCAG 1891
Query 1849 GTGACCATTTTCTTCTCCTTCTGTATTAAAAGCTCGACTTT-GATTTGAACCTGAAACAT 1907
|||||||| | |||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1892 GTGACCATATCCTTCTCTTTCTGTATTAAAAGCTCAACTTTTGATTTAAACCTGAAACAT 1951
Query 1908 GTTTTGGTTTATAC 1921
|||||||||||||
Sbjct 1952 TTTTTGGTTTATAC 1965
> Ahg489350 jgi|Araly1|489350|fgenesh2_kg.6__2484__AT5G24870.1
Length=2055
Score = 488 bits (264), Expect = 6e-137
Identities = 444/531 (84%), Gaps = 12/531 (2%)
Strand=Plus/Plus
Query 1124 ATGCCTGGTAGCCCCACGGAAGCTGACCCTTCAAGCTCTTTGGTGAACCGGGATGGTTTG 1183
||||||||||||||| | ||||| | || ||| |||||||| ||||||| ||||||||
Sbjct 1283 ATGCCTGGTAGCCCCTCAGAAGCCGGCCTTTCTCGCTCTTTGATGAACCGTGATGGTTTC 1342
Query 1184 AGTCACTACAACATGAATGGAATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACAT 1243
|| | || |||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1343 AGACGGTATAACATGAATGGAGTTGCAGAGGTATTGTTGGCACTGGAAAGGATTGAACAA 1402
Query 1244 GATGAAGAGCTTACATATGAGCAACTGGCT-TCTATAGAGACCAATCTATTCTCAAGTGG 1302
|| | |||||||||||| |||||| ||||| | | ||||||||||||| |||| || |||
Sbjct 1403 GACGCAGAGCTTACATACGAGCAATTGGCTGT-TTTAGAGACCAATCTGTTCTTAAATGG 1461
Query 1303 TATGTTCAGATTCTATGATCAGCATAGAGATATGAGGCTTGACATCGATAACATGTCATA 1362
|||| ||| ||| | ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1462 TATGAGCAGCTTCCACGATCAGCATAGAGATATGAGGCTTGACATTGATAACATGTCGTA 1521
Query 1363 TGAGGAGTTACTAGCTTTGGGGGATAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGA 1422
|||||| ||| |||| ||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1522 TGAGGAATTATTAGCACTGGAAGAGAAAATGGGTACAGTGAGCACTGCTCTAAGCGAAGA 1581
Query 1423 AGCAC-TCTCAAGAAGCCTTAAG-CAAAGCATTTATCAGGAGACA-GATGAAACCGGTTC 1479
||| | ||| || |||||| ||| | ||| ||||| | | | | |||||| ||||
Sbjct 1582 AGCGCTTCTGAA-AAGCCTGAAGTC-AAGTATTTA-CCGTCCAAATGATGAATCCGGCGA 1638
Query 1480 CATCT-CTCTGTATAAGGATGATGATATCAAGTGCAGTATTTGCCAGGAAGAGTATGTTG 1538
||| | | ||| | || ||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1639 CATGTGC-CTGAACAAAGATGATGATGTAAAGTGCAGCATTTGCCAGGAAGAGTATGTTG 1697
Query 1539 ATGGAGATGAATTAGGGACTATT-CCATGTCAACATATGTACCATGTGAGCTGTGTACAA 1597
||||||||||| |||| ||| || || || ||||||| ||||| |||||||| | |||
Sbjct 1698 ATGGAGATGAAGTAGGAACT-TTGCCTTGCCAACATAAATACCACGTGAGCTGCGCGCAA 1756
Query 1598 CAATGGCTGCGGATGAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAA 1648
|||||||| ||||||||||||||||| || || |||||||||||||| |||
Sbjct 1757 CAATGGCTTCGGATGAAGAATTGGTGTCCTATTTGCAAAACCTCTGCAGAA 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72561916725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5