BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10660.2
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940535 jgi|Araly1|940535|scaffold_601079.1 1753 0.0
Ahg489351 jgi|Araly1|489351|fgenesh2_kg.6__2485__AT5G24880.1 134 2e-30
> Ahg940535 jgi|Araly1|940535|scaffold_601079.1
Length=1280
Score = 1753 bits (949), Expect = 0.0
Identities = 1127/1207 (93%), Gaps = 35/1207 (3%)
Strand=Plus/Plus
Query 15 TCGTTATTTGATTTCTTAATAATGGCAACGACGTCTAGTACAACGAAAACGAAA-CGGGA 73
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1 TCGTTATTTGATTTCTTAATAATGGCAACGACGTCTAGTACAACGAAAACGAAACCGGAA 60
Query 74 CAACAAAAACCTAACCAGATCAAAATCACTCGGCAGAAAGCCAAAGCCGGTCTCATCATC 133
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AAAC-CAAACCTAACCAGATCAAAATCACTGGGCAGAAAGCCAAAGCCGGTCTCATCATC 119
Query 134 AGAGCCTGAAGCGAACGCAGATGGATCTGATCGGAAAACAATTGGGAAGCCTTTGCCTAA 193
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGAACCTGAAGCGAACGCAGATGGATCTGATCGGAAAACAATTGGGAAGCCTTTGCCTAA 179
Query 194 TTATCTGAAACCTACAATCAGCTCGAGACCGGACCCGGTCAAGTTCTTGAGAAAGAACAA 253
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 180 TTATCTGAAACCAACAATCAGCTCGAGACCTGACCCGGTCAAGTTCTTGAGGAAGAACAA 239
Query 254 CGCCGTCGAAGAAAATCAGAAGCTTCTTCGTAGACGATCCTTTGATCATCCTCCTTCGTC 313
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGCTGTCGAAGACAATCAGAAGCTTCTTCGTAGACGATCCTTTGATCATCCTCCTTCGTC 299
Query 314 TTTGACTTCTCCATCAACTTCATCAGCCCAT-AGATCTCTCAATACCTCTCCTGCCCACC 372
||||||||||||||||||||||||| ||| | | |||||||||||||||||||| ||
Sbjct 300 TTTGACTTCTCCATCAACTTCATCATCCC-TGAAATCTCTCAATACCTCTCCTG--CA-- 354
Query 373 CACACCTGCGAGACAAACCCGCGGTTCCAAGGGAGAAGCCTGTCACTGGTCTGCGTTCTA 432
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CAC-CC-ACGAGACAAACCCGCGGTTCCAAGGGAGAAGCCTGTCACTGGTCTGCGTTCTA 412
Query 433 CATCTTTCCATGGAAGCAGCAGGGGAGGTCTCAGAGGAAGCAGTACGGTGAAATCACCTC 492
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 413 CATCTTTCCATGGAAGCAGCAGAGGCGGTCTCAGAGGAAGCAGTACGGTGAAATCACCTC 472
Query 493 CTGTGGCTTCAAGAGGATCTTCAGGGGTAAAGAAGAGCGGTCTAAGCGGTAACAGTTCTT 552
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 473 CTGTGGCTTCAAGAGGATCTCCAGGGGTAAAGAAGAGCGGTCTAAGCGGTAGCAGCTCTT 532
Query 553 CCAAGAGCAAAAAGGAAGGTTCTGGGAATGTTCCCAAGAAGTCTTCGGGTAAAGAGATTT 612
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 533 CCAAGAGCAAAAAGGAAGGTTCTGCGAATGTTCCCAAGAAATCTTCGGGTAAAGAGATTT 592
Query 613 CCCCGGATTCTTCTCCTCTTGCGTCTGCTCACGAAGACGAAGAAGAGATTGTCAAGGTTG 672
||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 593 CCCCGGAATCTTCTCCTCTTGCGCCTGCTCACGAGGACGAAGAAGAGATTGTGAAGGTTG 652
Query 673 AGACCGATGTACACATTTCTGACCACGGAGAGGAACCGAAAGAGGAAGATAAAGATCAGT 732
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 653 AGACCGATGTACACATTTCTGACCACAGAGAAGAACCGAAAGAGGAAGATAAAGATCAGG 712
Query 733 TTGCACAACCGGATGAATCCGGTGAAGAGAAGGAGACCAGTCCAGTGGCTGCCTCCACA- 791
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTGCACAACAGGATGAATCCGGTGAAGAGAAGGAGACCAGTCCAGTGGCTGCCTCCACAA 772
Query 792 G---A------------A--GAACAA-AAA--GGAGAACTGAT-CGATGAGGATAAAAGC 830
| | | ||| || ||| ||||||||||| | ||||||||||||||
Sbjct 773 GTCCAGTGGCTGCCTCCACAGAAGAAGAAAAAGGAGAACTGATTC-ATGAGGATAAAAGC 831
Query 831 ACAGAGCAAATAGAGGAGCCgaaagaaccagagaacatcgaagaaaacaacagtgaagaa 890
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 832 AAAGAGCAAATAGAGGAGCCGAAAGAACCAGAGAACACCGAAGAAAACAACAGTGAAGAA 891
Query 891 gaggaagaagtcaaaaagaaa-TCTGATGATGAGGAAAATAGCGAGACAGTTGCTACTAC 949
||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 892 GAGGAAGAAGTTAAAAAGAAGGT-TGATGATGAGGAAAAGAGCGAGACAGTTGCTACTAC 950
Query 950 TACAGATATgaatgaagctgtgaatgtcgaagaaagtaaggaagaggaaaaggaagaagc 1009
|||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 951 TACAGATATGCATGAAGCTGTGAATGTCGGAGAAAGTAAGGAAGGGGATCAGGAAGAAGC 1010
Query 1010 agaagttaaagaagaggagggcgaaagcagcgccgcgaaagaagaaaCAACCGAAACAAT 1069
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1011 AGAAGTTAAAGAAGAGGAGAGCGAAAGCAGCAAAGCGAAAGAAGAAACAACCGAAACAAA 1070
Query 1070 GGCTCAAGTAGAAGAATTACCAGAGGAAGGAACAAAGAATGAAGTGGTGCAAGGGAAGAA 1129
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1071 GGCTCAAGTAGAAGAATTACCAGAGGAAGGAACAAAGAAGGAAGTGGTGCAAGGGAAGAA 1130
Query 1130 GGAATCTCCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCaagagaactcgaagaa 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GGAATCTCCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACTCGAAGAA 1190
Query 1190 gaacaag 1196
|||||||
Sbjct 1191 GAACAAG 1197
> Ahg489351 jgi|Araly1|489351|fgenesh2_kg.6__2485__AT5G24880.1
Length=1314
Score = 134 bits (72), Expect = 2e-30
Identities = 104/119 (87%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 1079 AGAAGAATTACCA-GAGGAAGGAACA-AAGAATGAAGTGGTGCAAGGGAAGAAGGAATCT 1136
||||||| | || || || |||| | ||||| ||||| ||| |||||||||||||||||
Sbjct 1134 AGAAGAAGAATCAGGA-GAGGGAA-AGAAGAAAGAAGTAGTGAAAGGGAAGAAGGAATCT 1191
Query 1137 CCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCaagagaactcgaagaagaacaa 1195
||| |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1192 CCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACCCGAGGAAGAACAA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52107455160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5