BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G10695.1

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940540 jgi|Araly1|940540|scaffold_601084.1                        359    1e-98
  Ahg487906 jgi|Araly1|487906|fgenesh2_kg.6__1040__AT5G10700.1        69.4    3e-11


> Ahg940540 jgi|Araly1|940540|scaffold_601084.1
Length=252

 Score =  359 bits (194),  Expect = 1e-98
 Identities = 229/245 (93%), Gaps = 5/245 (2%)
 Strand=Plus/Plus

Query  135  agaag-agaagaagaagaa--gGATGTGTTTGGTGTTCGTGTGTGATCAGGACGAGAGGG  191
            ||||| |||||||||||||  |||||||||||||||||||||||||| ||||||||||||
Sbjct  5    AGAAGAAGAAGAAGAAGAAGGGGATGTGTTTGGTGTTCGTGTGTGATAAGGACGAGAGGG  64

Query  192  TGATCGGAAGGTACGCAGCTCCTGGAGCGTGTCCGTACTGCGGAGGAGCGGTTCAAGTGG  251
            ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  65   TGATCGGAAGGTATGCAGCTCCTGGAGCGTGTCCCTACTGCGGCGGAGCGGTTCAAGTGG  124

Query  252  TTGACGTAAATAGCCAGTGGAGATTCTGCTTCGTTCCTCTCTCTAATAAATCCAAACGTC  311
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  125  TTGACGTAAATAGCCAGTGGAGATTCTGCTTCGTCCCTCTCTCTAATAAATCCAAACGTC  184

Query  312  GTCATCTCTGTTCCACTTGCGGCAAACGACTCATCGTCCATGGCTGAAAACAAAACTCCC  371
            | ||| ||||||| |||||||| |||||||||| ||||||||||||||| |||| | |||
Sbjct  185  GCCATATCTGTTCAACTTGCGGTAAACGACTCAACGTCCATGGCTGAAA-CAAACC-CCC  242

Query  372  ACCTC  376
            |||||
Sbjct  243  ACCTC  247


> Ahg487906 jgi|Araly1|487906|fgenesh2_kg.6__1040__AT5G10700.1
Length=591

 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Minus

Query  403  ATATCCAAATCTCTGACTTGCTTTGTGTATCGTGTTT  439
            |||||||||||||||||||||||||||||||||||||
Sbjct  591  ATATCCAAATCTCTGACTTGCTTTGTGTATCGTGTTT  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20413240115


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5