BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10700.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487906 jgi|Araly1|487906|fgenesh2_kg.6__1040__AT5G10700.1 904 0.0
> Ahg487906 jgi|Araly1|487906|fgenesh2_kg.6__1040__AT5G10700.1
Length=591
Score = 904 bits (489), Expect = 0.0
Identities = 558/592 (94%), Gaps = 2/592 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACCGCCGTCCTCTCCGCAGCGTTTCGATTCCCGATAGTTACCCGCCGACTCTCT 60
||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1 ATGGCGAGCGCCGTGATCTCCGCAGCGTTTCGACTCCCGATCGTTACCCGCCGACTCTCT 60
Query 61 GCTCCGGCGCCGCGAATTAGGTTTTATCATTCTACGATCCGATTTGCTCATTTCCGAAGA 120
||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||
Sbjct 61 GCTCCGGCGCCGCGAATTAGGTTTTCTCATTCCACGATCCGAATTGCTCATCCCCGAAGA 120
Query 121 TTCACAACGGCTTCTCCTTCAATGAGCCAGCAGACT-GGCGAAATCGATGCCGTCGTCGA 179
|||||||||||| || ||||||||||||| |||| | || ||||||| ||||||||||||
Sbjct 121 TTCACAACGGCTGCTTCTTCAATGAGCCAACAGA-TGGGAGAAATCGGTGCCGTCGTCGA 179
Query 180 TGCTTCGTCGGCGGAGAAACCCGACGACGTCGTGGTGCAATACGTTGTGCTTCGACGAGA 239
|||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 180 TGCTTCCTCGGCGGAGAAACCCGACGACGTCGTTGTGCAGTACGTTGTGCTTCGGCGAGA 239
Query 240 TCTAATCGATTCGTGGCCACTTGGGAGCGTTGTAACACAAGGATGTCATGCGTCAGTGGC 299
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TCTAATCGATTCGTGGCCACTAGGGAGCGTTGTAACACAGGGATGTCATGCGTCAGTGGC 299
Query 300 AGCGATCTGGTCGTTCAAAGACGATCCGGTCACGCTTCAGTACTGTGATCCGCAGCACAT 359
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 300 GGCGATCTGGTCGTTCAAAGACGACCCGGTCACTCTTCAGTACTGTGATCCGCAGCACAT 359
Query 360 TGATTCTATGCATAAGGTGACTCTGGAAGTTAAAGGGGAAACGCAGATGATGAATTTGTC 419
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 360 TGATTCTATGCATAAGGTGACTCTTGAGGTTAAAGGGGAAACGCAGATGATGAATTTGTC 419
Query 420 AGAGAAGCTGAAATTAGGAGGAATCTCTCATAAGCTATGGATGGAGCAGCCGGAGAATAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGAAGCTGAAATTAGGAGGAATCTCTCATAAGCTATGGATGGAGCAGCCGGAGAATAT 479
Query 480 TCCGACGTGTATTGCTACAAAGCCTTATCCTAAATCCCAAGTCTCTTCTTTCTTCAAAAA 539
||||||||||| || || |||||||||| |||||| |||||||||||||||||||||||
Sbjct 480 ACCGACGTGTATCGCCACGAAGCCTTATCATAAATCTCAAGTCTCTTCTTTCTTCAAAAA 539
Query 540 GCTCAAGCTTTGCAAAAACACGATACACAAAGCAAGTCAGAGATTTGGATAT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTCAAGCTTTGCAAAAACACGATACACAAAGCAAGTCAGAGATTTGGATAT 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5