BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10710.2
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487907 jgi|Araly1|487907|fgenesh2_kg.6__1041__AT5G10710.1 1657 0.0
> Ahg487907 jgi|Araly1|487907|fgenesh2_kg.6__1041__AT5G10710.1
Length=1222
Score = 1657 bits (897), Expect = 0.0
Identities = 1068/1147 (93%), Gaps = 25/1147 (2%)
Strand=Plus/Plus
Query 1 TCCGGCGCTGCTTAAACCGTCTCTCGTCGCCT-GTCTGATCTGTTATCTTCTCTACTC-T 58
|||||||||||||||||| |||||| || || |||||||||||||| ||||||||| |
Sbjct 95 TCCGGCGCTGCTTAAACCATCTCTCACCG-CTAATCTGATCTGTTATCATCTCTACTCGT 153
Query 59 CCGGTGTCGAGCTTGGTCAAAAGACCTCTTGATAAGCAAAATATGGGAGAAATGATTGTT 118
||| ||| | || | ||| |||| | | || |||||||||||||||||
Sbjct 154 -CGGCGTC--G-TT-G-----AGA--GCTTGGT---C--AA-CTGGGAGAAATGATTGTT 195
Query 119 TCAATGGACCAAGATATCCGACTGGATACAACACGAGCAAGATTGTCAAACCTTCTCAAG 178
|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 196 TCGCTGGACCAAGATATCCGACTGGATTCAACACGAGCAAGATTGTCAAATCTTCTCAAG 255
Query 179 AGGCATCGAGAATTGTCAGACCGTCTTACTAGGGATTCTGATAAGACAATGTTAGATCGC 238
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 256 AGGCATCGAGAATTGTCAGACCGTCTTACTAGGGATTCTGATAAGACAATATTAGATCGG 315
Query 239 TTAAACAAAGAATTTGAAGCTGCACGGAGATCCCAAAGTCAGGAAGTCTTCTTAGATGGG 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TTAAACAAAGAGTTTGAAGCTGCACGGAGATCCCAAAGTCAGGAAGTCTTCTTAGATGGG 375
Query 299 GAAGAGTGGAATGATGGTTTGTTGGCCACATTAAGGGAACGGGTGCATATGGAAGCTGAC 358
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 376 GAAGAGTGGAATGATGGTTTGTTGGCCACGCTGAGGGAACGGGTGCATATGGAAGCTGAC 435
Query 359 AGAAAGGCAGATAACGGTAATGCAGGTTTTTCACTAGTTTGTCATCCTGAAGAACGAATT 418
|||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||| ||
Sbjct 436 AGAAAGGCAGATAACGGTAATGTAAGTTTTGCACTACTTTGTCATCCTGAAGAACGAGTT 495
Query 419 ACTTACAGAGTGGGAAATAAGGTGATATGTTGCCTAGATGGATCGAGAATTGGAATACAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 ACTTACAGAGTGGGAAATAAGGTGATATGTTGCCTAGATGGATCGAGAATTGGAATACAG 555
Query 479 TTTGAAACATCTACTGCAGGAGAAACTTACGAGGTTTACCACTGTGTGCTTGAGAGCAAG 538
| ||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 556 TATGAAACACCAACTATAGGAGAAACTTACGAGGTTTTCCACTGTGTGCTTGAGAGCAAG 615
Query 539 TCGTTTTTGGAGAAGATGATTGTGCTTGAGCACACAATTCCTTTCTTTTTGCCGCTAAGT 598
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 616 TCGTTTTTGGAGAAGATGATTGTACTTGAGCACACAATTCCTTTCTTTTTGCCACTACGT 675
Query 599 GACTTGGAAAATGATCTTCTTTTTTCGAATGCTAAGAAATTCATCGATAATGTTGGGGAT 658
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 676 GACTTGGAAAATGATCTTCTTTGTTCGAATGCTAAGAAATTCATCGATAATGTTGGGGAT 735
Query 659 CTCCTGCAAGCATATGTGGACAGAAAGGAACAGGTCCGGCTTATCAAAGAGCTCTTTGGA 718
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 736 CTCCTGCAAGCATATGTGGACAGAAAGGAACAGGTCCGGGTTATCAAAGAGCTCTATGGA 795
Query 719 CATCAGATCAGTGAGATTTATCACAGTCTTCCTTACCACATGATTGAATTTTCTATGGAT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 796 AATCAGATCAGTGAGATTTATCACAGTCTTCCTTACCACATGATTGAATTTTCCATGGAT 855
Query 779 GATTGTGACTGCAAGTTCGTGGTGAGCCTTAGATATGGAGATCTTCTGTGTGAACTTCCG 838
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GATTGTGACTGCAAATTCGTGGTGAGCCTTAGATATGGAGATCTTCTGTGTGAACTTCCG 915
Query 839 ACAAAAGTGAGAATTCTAGTATGGCCAATGCATCATC-T--GTCGAAGAAACAGTGTACA 895
||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 916 ACAAAAGTGAGGATTCTAGTTTGGCCAATGCATCATCATCAGTCGAAGAAACAGTGTACA 975
Query 896 AGCCCTGGAAGTCCAGCAATCCCTGTGCGTTTACCATTTGCCGAGGATGCTTTCCGGATC 955
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 976 AGCCCTGGAAGTCAAGCAATCCCTGTGCGTTTATCATTTGCCGAGGATGCTTTCCGGATC 1035
Query 956 CAATCACTACCTGAAGCATACGCAGAGATTATGCCGAACATGCCGAATGAAATTCGGCAA 1015
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1036 CAATCACTACCTGAAGCATACGCAGAGATTATGCAGAACATGCCGAATGAAATTCAGCAA 1095
Query 1016 TTATTTCAGACTAGTCCAAGCTAAAAGTTGAAGCTGTGTGCAAACTTTCTACTTGTCTC- 1074
||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1096 CTATTTCAGAGAAGTCCAAGCTAAAAGCTGAAGCTGTGTGCAAACTTTCTATTTCTCTCA 1155
Query 1075 GTTGCTTCGTTGTATGATGTTTGATTTTGATCCTTGTTCCAAACTGTTAAAATAGTGCTA 1134
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1156 GCTGCTTCGTTGTATGATGTTTGATATTGATCCTTGTTCCAAACTGTTAAAATAGTGCTA 1215
Query 1135 TGAAGAA 1141
||||||
Sbjct 1216 CGAAGAA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5