BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10730.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940544 jgi|Araly1|940544|scaffold_601088.1 1561 0.0
Ahg894745 jgi|Araly1|894745|Al_scaffold_0006_2741 318 5e-86
Ahg947792 jgi|Araly1|947792|scaffold_704021.1 316 2e-85
> Ahg940544 jgi|Araly1|940544|scaffold_601088.1
Length=904
Score = 1561 bits (845), Expect = 0.0
Identities = 884/903 (98%), Gaps = 2/903 (0%)
Strand=Plus/Plus
Query 212 TCTTCTTCTCCGATTCGAAAATGAGGACAATCGTTTCGCGTTTGATTCGTTATC-AATCG 270
||| || ||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 1 TCTCCTGCTCCGATTCGAAAATGAGGACAATCGTCTCGCGTTTGATTCGTTA-CAAATCG 59
Query 271 TCTCTTTCCCAGATACGGTTTGTTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGAC 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTCTTTCCCAGATACGGTTTGTTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGAC 119
Query 331 TCTAACAAAATTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTAACAAAATTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCA 179
Query 391 CCTCCTACTGAGAAGCTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGT 450
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 CCTCCTACTGAGAAGCTGCTTGTTTTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGT 239
Query 451 AAAGAAGCTTTAGATCGCGGCTTATCTGTCTCTAGCCTTAGCAGGTCAGGTAGGTCGTCT 510
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 240 AAAGAAGCTTTAGATCGCGGCTTATCTGTCTCTAGCCTTTGCAGGTCAGGTAAGTCGTCT 299
Query 511 TTACAAGAGTCCTGGGCCTCCAGAGTAACATGGCATCAAGGAAACCTTCTATCATCTGAT 570
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TTACAAGAGTCCTGGGCTTCCAAAGTAACATGGCATCAAGGAAACCTTCTATCATCTGAT 359
Query 571 TTATTGAAAGATGCTCTTGAGGGAGTGACTTCTGTGATTTCTTGTGTTGGTGGTTTTGGT 630
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTATTAAAAGATGCTCTTGATGGAGTGACTTCTGTGATTTCTTGTGTTGGTGGTTTTGGT 419
Query 631 TCAAACTCATATATGTATAAGATTAACGGGACTGCAAACATCAACGCAATTAGGGCTGCC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCAAACTCATATATGTATAAGATTAACGGGACTGCAAACATCAACGCAATTAGGGCTGCC 479
Query 691 TCAGAAAAAGGTGTTAAAAGATTTGTCTATATTTCTGCTGCGGATTTCGGATTAGCCAAC 750
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCAGAAAAAGGTGTTAAAAGATTTGTCTATATTTCTGCTGCGGATTTCGGATTAGCCAAT 539
Query 751 TACTTGTTGAGAGGATACTATGAGGGAAAGCGAGCTGCTGAGACCGAGCTGCTCACAAGA 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACTTGTTGAGAGGATACTATGAGGGAAAGCGAGCTGCTGAGACCGAGCTGCTCACAAGA 599
Query 811 TTTGCATATGGAGGTATAATCTTGCGACCTGGTTTTATATATGGAACTCGCAGTGTTGGG 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTGCATATGGAGGTATAATCTTGCGACCTGGTTTTATATATGGAACTCGCAGTGTTGGG 659
Query 871 AGCATGAAGATCCCGTTAGGAGTATTTGGTTCACCCATGGAGATGGTTCTTCAACAAGCA 930
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCATGAAGATCCCATTGGGAGTATTTGGTTCACCCATGGAGATGGTTCTTCAACAAGCA 719
Query 931 AAACCTCTGAACCAGCTTCCATTAGTCGGACCTTTGTTCACACCTCCGGTGAATGTTGAA 990
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 720 AAACCTCTGAACCAGCTTCCGTTAGTCGGACCTTTATTCACACCTCCGGTGAATGTTGAA 779
Query 991 TCGGTTGCAAAAGTCGCAGTTAGAGCAGCCACAGATCCAGTGTTCCCTCCCGGGATTGTG 1050
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 TCGGTTGCAAAAGTCGCAGTTAGAGCAGCCACTGATCCAGTGTTCCCTCCCGGGATTGTG 839
Query 1051 GATGTCCATGGAATACAACGTTACAGCCAACAGAAATCGAGATAAGTCCGTTTTGAAAAG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GATGTCCATGGAATACAACGTTACAGCCAACAGAAATCGAGATAAGTCCGTTTTGAAAAG 899
Query 1111 CTT 1113
|||
Sbjct 900 CTT 902
> Ahg894745 jgi|Araly1|894745|Al_scaffold_0006_2741
Length=276
Score = 318 bits (172), Expect = 5e-86
Identities = 202/216 (94%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 284 TAC-GGTTTG-TTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCT-AACAAAA 340
||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 59 TACAGGTTTGTTTTCTGTCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCTTAACAAAA 118
Query 341 TTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCACCTCCTACTG 400
|||||||||| |||||||||||||||| |||| ||||||||||||||||| |||| ||||
Sbjct 119 TTGATGAGCCATTCAATGTGGAAGAAGTTGAGTCTGTACATGTGCCTCCAACTCCAACTG 178
Query 401 AGAAGCTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGTAAAGAAGCTT 460
||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 179 AGAAGCTGCTTGTCCTGGGTGGAAATGGTTTTGTGGGATCACACATATGTAAAGAAGCTT 238
Query 461 TAGATCGCGGCTTATCTGTCTCTAGCCTTAGCAGGT 496
|||||||||||||||| |||||||||||||||||||
Sbjct 239 TAGATCGCGGCTTATCGGTCTCTAGCCTTAGCAGGT 274
> Ahg947792 jgi|Araly1|947792|scaffold_704021.1
Length=336
Score = 316 bits (171), Expect = 2e-85
Identities = 198/211 (94%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 287 GGTTTG-TTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCTAACAAAATTGAT 345
|||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 103 GGTTTGTTTTCTGTCTCTGGTGGCGGGAGGTATCTGTCGACAGACTCTAACAAAATTGAT 162
Query 346 GAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCACCTCCTACTGAGAAG 405
|||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||
Sbjct 163 GAGCCCTTCAATGTGGAAGAAGTTGATTCTGTACATGTGCCTCCAACTCCAACTGAGAAG 222
Query 406 CTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGTAAAGAAGCTTTAGAT 465
|||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 223 CTGCTTGTCCGGGGTGGAAATGGTTTTGTGGGATCACATATATGTAAAGAAGCTTTAGAT 282
Query 466 CGCGGCTTATCTGTCTCTAGCCTTAGCAGGT 496
||||||||||| |||||||||||||||||||
Sbjct 283 CGCGGCTTATCGGTCTCTAGCCTTAGCAGGT 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5