BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10740.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487908 jgi|Araly1|487908|fgenesh2_kg.6__1042__AT5G10740.1 1773 0.0
Ahg489354 jgi|Araly1|489354|fgenesh2_kg.6__2488__AT5G24940.1 994 0.0
> Ahg487908 jgi|Araly1|487908|fgenesh2_kg.6__1042__AT5G10740.1
Length=1526
Score = 1773 bits (960), Expect = 0.0
Identities = 1184/1284 (92%), Gaps = 48/1284 (4%)
Strand=Plus/Plus
Query 1 TATTTTTAGCAAATAAATCCATTTGTTCGCCGGAATATGCTCCCTTCTCTTAACGTCGAT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATTTTTAGCAAATGAATCCATTTGTTCGCCGGAATATGCTCCCTTCTCTTAACGTCGAT 60
Query 61 CACCTGtttttctctttccctctctctctatttttctcAACTAGGAATCAACCATGAATC 120
|||||| | | | |||||||||| |||||||||||| ||||||
Sbjct 61 CACCTG------------------T-T-T-TTTTTCTCAAGTAGGAATCAACCTTGAATC 99
Query 121 TCCCATCATTCTCACTTCTCTCTTCTAATTCTTTCATGGAATTTTCAGGTTAGAAGAAGA 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 100 TCCCATCATTCTCACTTCTCTCTTCTAATTCTTTCATGGAATTTTGAGGTTAGACGAACA 159
Query 181 TTCCGGGCAGATTATCTGTTGATTCGAAGAATACCGAATACGCGTTTGAAATTTCTGAAG 240
||||||||| ||||||||||||||||||| || || | |||||||||||||||||
Sbjct 160 TTCCGGGCATATTATCTGTTGATTCGAAG-AT------TA-GAGTTTGAAATTTCTGAAG 211
Query 241 AATTATGGGATACT-TGGACTTGGCCTTGTCGTATTCCAACCAGCCGCAGACTGTTGAAG 299
|| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 212 AAATATGGGATA-TCTGGACTTGGCCTTGTCGTATTCCAACCAGCCGCAGACTGTTGACG 270
Query 300 CTCCAGCGAGCGGAGGAGGTCTCAGCCAGAATGGAAAATTTAGCTATGGATATGCAAGCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CTCCAGCGAGCGGAGGAGGTCTCAGCCAGAATGGAAAATTTAGCTATGGATATGCAAGCT 330
Query 360 CCGCTGGCAAGAGATCATCTATGGAAGACTTTTTTGAAACTAGGATCGACGGTATCAATG 419
| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 331 CAGCTGGGAAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATG 390
Query 420 GAGAAATAGTTGGTCTATTTGGAGTTTTTGATGGCCATGGTGGAGCCAGAGCAGCTGAGT 479
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 391 GAGAAATCGTTGGTCTCTTTGGAGTTTTTGATGGTCATGGTGGAGCCAGAGCAGCTGAGT 450
Query 480 ACGTGAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCA 539
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 451 ACGTGAAGCGTCATCTTTTCAGTAATCTCATCACCCACCCAAAGTTTATCTCTGACACCA 510
Query 540 AATCAGCTATAACTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATA 599
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 511 AATCAGCTATAACTGATGCCTATAACCATACAGACTCAGAACTTCTTAAGTCAGAAAATA 570
Query 600 GTCACAATAGAGACGCTGGTTCTACTGCGTCTACAGCTATTCTTGTTGGTGACCGTTTAG 659
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 571 GTCACAATAGAGACGCTGGTTCGACTGCGTCTACAGCTATTCTTGTTGGTGACCGCTTAG 630
Query 660 TTGTTGCAAATGTTGGTGATTCTAGAGCTGTTATCAGCAGAGGCGGAAAAGCCATTGCTG 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 631 TTGTTGCAAATGTTGGTGATTCAAGAGCTGTTATCAGCAGAGGCGGAAAAGCCATTGCTG 690
Query 720 TGTCAAGGGACCATAAACCGGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTG 779
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TGTCAAGGGACCATAAACCTGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTG 750
Query 780 GATTTGTGATGTGGGCAGGAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGT 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 751 GATTTGTGATGTGGGCAGGAACTTGGAGGGTTGGAGGAGTTCTTGCAGTTTCTCGTGCGT 810
Query 840 TTGGTGATCGGCTTCTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TTGGTGATCGGCTTCTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGA 870
Query 900 TTGATGATACTCTTGAGTTTTTGATTCTAGCAAGTGATGGACTGTGGGATGTTTTCTCTA 959
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 871 TTGATGATTCCCTTGAGTTTTTGATCCTAGCAAGTGATGGACTGTGGGATGTTTTCTCTA 930
Query 960 ATGAGGCAGCAGTTGCAATGGTAAAGGAAGTTGAAGATCCCGAGGACTCAGCGAAAAAAC 1019
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | ||
Sbjct 931 ATGAGGCAGCAGTTGCAATGGTTAAGGAAGTTGAAGATCCAGAGGAGTCAGCGAAGACAC 990
Query 1020 TGGTGGGTGAAGCAATAAAGAGAGGAAGTGCAGATAACATCACATGTGTTGTCGTTCGTT 1079
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 991 TTGTGGGTGAAGCAATAAAGAGAGGAAGTGCAGACAACATCACATGTGTTGTCGTTCGTT 1050
Query 1080 TCTTGGAGAAGAAGTCAGCTTCATCAAGCCACATTAGCTCTTCCTCCTCCAAGGAAGCCA 1139
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1051 TCTTGGAGAAGAAGACAGCTTCATCAAGCCACATTAGCTCATCCTCCTCCAAGGAAGCCA 1110
Query 1140 AGGAAATGCCTCCACTTGGAGACCTTGCTATCTCATCGAATGAAGCTAAGCAAGTCCA-- 1197
| |||||||| |||||||||||||| |||||||| || |||||||||| ||||||||
Sbjct 1111 ATGAAATGCCGCCACTTGGAGACCTCGCTATCTCGTCCAATGAAGCTACCCAAGTCCAAA 1170
Query 1198 --GA-TC-G-G-----C---TCAGGGAACAAACCAGAGAATGTAACGAATCGAAAACCGG 1244
|| || | | | ||||||||||||||||||||||||| |||||||||||| |
Sbjct 1171 TCGACTCAGAGAATATCAGCTCAGGGAACAAACCAGAGAATGTAATGAATCGAAAACCTG 1230
Query 1245 ACACTGCAAGTC-GCTCAACTGAT 1267
| ||||||| | ||| ||| |||
Sbjct 1231 TCCCTGCAAG-CAGCTTAACCGAT 1253
Score = 178 bits (96), Expect = 1e-43
Identities = 198/241 (82%), Gaps = 32/241 (13%)
Strand=Plus/Plus
Query 1290 CAGTGACCGACAAGGTATAAATAGCGATTCCCTCTATTCTCTAGGAACTAAAGACAGTGT 1349
|||||||||||||||||||| ||||||||||||||||||||||||||| || | || ||
Sbjct 1318 CAGTGACCGACAAGGTATAAGTAGCGATTCCCTCTATTCTCTAGGAAC--AA-A-AGCGT 1373
Query 1350 TCTCTTCCCTCAAACACGGCAAACAAACTTACTGATCGTTGATCGCGTTTGCATTTAGGA 1409
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1374 TCTCTTCCCTCAAACACGGCAAACAAACTTACTGATCGTTGATCTCGTTTGTATTTAC-- 1431
Query 1410 TTGAAGATGTATTTAATACGATTGTTTTAAGTTTATGATTACGTTTGTGTGTATATAATA 1469
| | | | | | ||||| ||| ||| || || || | || ||| ||
Sbjct 1432 T--A---T-T-T--AG---GATTG----AAG---ATG-TT--GT--GTATATA-ATA-TA 1465
Query 1470 CATGCATCGACTTTTGTATTTGTTTATGTGTAAATGTTTTAAATTTCATGATAGTTTATT 1529
|||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1466 CATGCATCGATTTTTGTATTTGTTTATGTGTAAATGTTTAAAAGTTCATGATAGTTTATT 1525
Query 1530 C 1530
|
Sbjct 1526 C 1526
> Ahg489354 jgi|Araly1|489354|fgenesh2_kg.6__2488__AT5G24940.1
Length=1341
Score = 994 bits (538), Expect = 0.0
Identities = 749/851 (88%), Gaps = 14/851 (2%)
Strand=Plus/Plus
Query 245 ATGGGATACT-TGGACTTGGCCTTGTCGTATTCCAACCAGCCGCAGACTGTTGAAGCTCC 303
|||||||| | |||||||||| || |||||||| || || || || ||||||||||||
Sbjct 1 ATGGGATA-TATGGACTTGGCGTTATCGTATTCGAATCAAATGCGGATTGTTGAAGCTCC 59
Query 304 AGCGAGCGGAGGAGGTCTCAGCCAGAATGGAAAATTTAGCTATGGATATGCAAGCTCCGC 363
|| |||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 60 CGCAAGCGGAGGTGGTCTCAGTCAGAATGGAAAATTCAGCTATGGATATGCAAGCTCAGC 119
Query 364 TGGCAAGAGATCATCTATGGAAGACTTTTTTGAAACTAGGATCGACGGTATCAATGGAGA 423
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 120 TGGGAAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATGGAGA 179
Query 424 AATAGTTGGTCTATTTGGAGTTTTTGATGGCCATGGTGGAGCCAGAGCAGCTGAGTACGT 483
||| || |||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 180 AATCGTCGGTCTATTTGGAGTCTTTGATGGACATGGTGGAGCAAGAGCAGCTGAGTATGT 239
Query 484 GAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATC 543
|||||| ||||||||||| ||||| || || || || ||||| |||||||| ||||||||
Sbjct 240 GAAGCGTCATCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGATACCAAATC 299
Query 544 AGCTATAACTGATGCTTATAAC-CATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC 602
|| ||| ||||||| |||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 300 TGCAATAGCTGATGCATATA-CTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTC 358
Query 603 ACAATAGAGACGCTGGTTCTACTGCGTCTACAGCTATTCTTGTTGGTGACCGTTTAGTTG 662
||| |||||| |||||||||||||| || |||||||||||||||||||| |||||| |||
Sbjct 359 ACACTAGAGATGCTGGTTCTACTGCTTCCACAGCTATTCTTGTTGGTGATCGTTTACTTG 418
Query 663 TTGCAAATGTTGGTGATTCTAGAGCTGTTATCA-G-CAGAGGCGGAAAAGCCATTGCTGT 720
|||| |||||||||||||| ||||||||||| | | | |||||||||| ||| |||||||
Sbjct 419 TTGCTAATGTTGGTGATTCCAGAGCTGTTAT-ATGTC-GAGGCGGAAATGCCTTTGCTGT 476
Query 721 GTCAAGGGACCATAAACCGGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTGG 780
|||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 477 GTCAAGAGACCATAAACCTGACCAAAGTGATGAACGTGAACGGATTGAGAATGCTGGTGG 536
Query 781 ATTTGTGATGTGGGCAGGAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTT 840
||||||||||||||||| |||||||| || ||||||||||||||||||||||| || ||
Sbjct 537 TTTTGTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCTCGCGCCTT 596
Query 841 TGGTGATCGGCTT-CTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGA 899
||||||||| || ||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 597 TGGTGATCGA-TTGCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGA 655
Query 900 TTGATGATACTCTTGAGTTTTTGATTCTAGCAAGTGATGGACTGTGGGATGTTTTCTCTA 959
|||||||| ||||||| ||| ||||||| || || |||||||| |||||||||||||| |
Sbjct 656 TTGATGATTCTCTTGAATTTCTGATTCTTGCTAGCGATGGACTATGGGATGTTTTCTCCA 715
Query 960 ATGAGGCAGCAGTTGCAATGGT-AAAGGAAGTTGAAGATCCCGAGGACTC-AGCGAAAAA 1017
|||||| ||| |||||| |||| |||| ||||||||||||| || || || | | || ||
Sbjct 716 ATGAGGAAGCGGTTGCAGTGGTGAAAG-AAGTTGAAGATCCGGAAGAGTCCACC-AAGAA 773
Query 1018 ACTGGTGGGTGAAGCAATAAAGAGAGGAAGTGCAGATAACATCACATGTGTTGTCGTTCG 1077
||| ||||| |||||||| ||||||||||||||| || || |||||||| ||||| ||
Sbjct 774 ACTTGTGGGCGAAGCAATTCGGAGAGGAAGTGCAGACAATATTACATGTGTAGTCGTACG 833
Query 1078 TTTCTTGGAGA 1088
|||||||||||
Sbjct 834 TTTCTTGGAGA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5