BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G10745.1

Length=1391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940546 jgi|Araly1|940546|scaffold_601090.1                        320    2e-86


> Ahg940546 jgi|Araly1|940546|scaffold_601090.1
Length=196

 Score =  320 bits (173),  Expect = 2e-86
 Identities = 180/183 (98%), Gaps = 1/183 (1%)
 Strand=Plus/Plus

Query  73   TCTTTCATGGCGAAGGAGCAGCACTTACGACCTTGGTTTCTGGATCTAGTACCGGCTTTG  132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  15   TCTTTCATGGCGAAGGAGCAGCACTTACGACCTTGGTTTCTGGATCTAGTACCGGCTTTG  74

Query  133  GTTGTTTTGCTCGCCGCAGCTCATGTCATCGCCTTGGGTTACTGGATTTACAGATTGGCC  192
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  75   GTTGTTTTCCTCGCCGCAGCTCATGTCATCGCCTTGGGTTACTGGATTTACAGATTGGCC  134

Query  193  ACTGATCGTCGAGCTCAGAGTCAGAGAGGCAAATTCCACTGAAGAAACATTCGAATAGGT  252
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  135  ACTGATCGTCGAGCTCAGAGTCAGAGAGGCAAATTTCACTGAAGAAACAT-CGAATAGGT  193

Query  253  TCG  255
            |||
Sbjct  194  TCG  196



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51993184425


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5