BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10750.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487909 jgi|Araly1|487909|fgenesh2_kg.6__1043__AT5G10750.1 1474 0.0
> Ahg487909 jgi|Araly1|487909|fgenesh2_kg.6__1043__AT5G10750.1
Length=1130
Score = 1474 bits (798), Expect = 0.0
Identities = 952/1023 (93%), Gaps = 23/1023 (2%)
Strand=Plus/Plus
Query 20 AAGCCATTTCCTCCGTCCCTTATTTTTGTCACACCACACAAAGTCGTCTTTGGAGAGAGA 79
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCCATTTCCTCCGTCCCTTA-TTTTGTCACACCACACAAAGTCGTCTTTGGAGAGAGA 59
Query 80 GAAGGGCCAACGACCACACATACACACACAGACCAATAAACCATGAGCCCTTCCAAGCAG 139
||| || | | || ||||||||||||||||||||||||||| |
Sbjct 60 GAA-GG-----G--------------C-CA-ACCAATAAACCATGAGCCCTTCCAAGCGG 97
Query 140 CGACATCGTAGCTCTACCGGAGAAAACAAGTCAAAGCCGGTCAGATCCGCTTCATCCTCC 199
|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 98 CGACATCGTAGCTCAACCGGAGAAAACAAGTCAAAACCGGTCAGATCCGGTTCATCCTCC 157
Query 200 GCCATACCGGAATGGATTACCGAATCAACCAACGGCGGATCTCTCCGTCGCGTAGATCCC 259
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 158 GCCATACCGGAATGGATTACCGAATCAACCAACGGCGGATCTCTTCGTCGCGTAGATCCC 217
Query 260 GATACAGGTACCGACGGCTGGGCTTCTCCTCCCGGCGATGTTTTCTCTCTCCGCTCCGAT 319
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 GATACAGGTACAGACGGCTGGGCTTCTCCTCCCGGCGATGTTTTCTCTCTCCGCTCCGAT 277
Query 320 TCTTACTTGTCCaaaaaacaaaaaaCTCCCGCCGGTGATTACCTCCTTTCTCCCGCCGGC 379
|| |||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 278 TCGTACTTGACCAAAAAACAAAAATCTCCCGCCGGAGATTACCTCCTCTCTCCCGCCGGC 337
Query 380 ATGGACTGGCTCAAATCAAGTACCAAACTCGAGAACGCGCTCGCTCGTCCCGATAACCGT 439
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 338 ATGGACTGGCTCAAATCAAGTACCAAACTCGAGAACGTGCTCGCTCGTCCCGATAATCGT 397
Query 440 GTAGCTCACGCGCTTAGAAAAGCTCAATCTCGCGGTCAATCTCTCAAGAGCTTCATCTTC 499
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 398 GTGGCTCACGCGCTTAGAAAAGCTCAATCTCGCGGTCAATCTCTTAAGAGCTTCATCTTC 457
Query 500 GCCGTGAATCTCCAGATTCCAGGTAAGGATCATCACAGCGCCGTGTTCTACTTCGCGACG 559
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 458 GCCGTGAATCTCCAGATTCCAGGTAAAGATCATCACAGCGCCGTGTTTTACTTCGCGACG 517
Query 560 GAAGAACCGATTCCTTCCGGTTCGCTTCTCCACCGGTTCATCAACGGCGACGATGCCTTC 619
|| ||||||||||||||||||||||| ||||| ||||||||||||||||| || || |||
Sbjct 518 GAGGAACCGATTCCTTCCGGTTCGCTCCTCCATCGGTTCATCAACGGCGATGACGCTTTC 577
Query 620 CGGAACCAGAGATTCAAAATCGTGAATCGGATTGTGAAAGGTCCTTGGGTAGTTAAAGCC 679
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 578 CGAAACCAGAGATTCAAAATCGTGAATCGGATTGTGAAAGGTCCTTGGGTAGTGAAAGCC 637
Query 680 GCGGTGGGGAACTATAGCGCTTGTCTTCTAGGTAAAGCCTTGACGTGCAATTACCACAGA 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 GCGGTGGGGAACTATAGCGCTTGTCTTCTAGGTAAAGCCTTGACGTGCAATTACCACAGA 697
Query 740 GGTCCTAACTACTTTGAAATTGACGTCGACATTAGCAGCTCAGCGATCGCAACGGCGATT 799
||||| |||||||||||||| || ||||||||| ||||||| |||||||||||||||||
Sbjct 698 GGTCCCAACTACTTTGAAATCGATGTCGACATTTGCAGCTCGGCGATCGCAACGGCGATC 757
Query 800 CTACGGCTGGCTTTAGGGTACGTGACGAGCGTGACAATCGATATGGGGTTCTTAGCAGAG 859
|| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 758 CTCCGGCTAGCTTTAGGGTACGTGACGAGCGTGACGATCGATATGGGGTTCTTAGCGGAG 817
Query 860 GCACAAACGGAAGAGGAGCTGCCGGAGAGATTAATCGGAGCTGTTAGAGTTTGCCAAATG 919
|| || |||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 818 GCGCAGACGGAAGAGGAGTTGCCGGAGAGATTAATTGGAGCTGTTAGGGTTTGTCAAATG 877
Query 920 GAGATGTCGTCAGCGTTTGTTGTCGACGCGCCACCACCGCAGCAACTGCCGTCACAACCG 979
||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||
Sbjct 878 GAGATGTCGTCGGCGTTTGTGGTCGACGCGCCACCGCCGCAGCAACCGCCGTCACAACCG 937
Query 980 TGTAGAACATTAAGTTCGGCGAAAGTTAACCATGACGAGGACGAGGATTGAGATTAAACC 1039
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 938 TGTAGAACATTGAGTTCGGCGAAAGTTAACCACGACGAGGACGAGGATTGAGATTAAAAC 997
Query 1040 ACA 1042
|||
Sbjct 998 ACA 1000
Score = 207 bits (112), Expect = 1e-52
Identities = 124/130 (95%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1077 CTCAAAGAATCTGAAACAATTTTCATTAATCTCAATCAAATTTATATTAATTAttttttt 1136
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1001 CTCAAAGAATGTGAAACAATTTTCATTAATCTCAATCAAATTTATATTAATCATTTTTTT 1060
Query 1137 GTTAATGGATTTTGTAATTAATCAAGAGGTTTCATGATATATTTAATGGAATTAAATTGA 1196
||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1061 GTTTATGGATTTTGTAAATAATCGAGAGGTTTCATGATATATTTAATGGAATTAAATTGA 1120
Query 1197 AGTTCGACGG 1206
| ||||||||
Sbjct 1121 AATTCGACGG 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5