BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10770.1
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325615 jgi|Araly1|325615|fgenesh1_pm.C_scaffold_6000835 2180 0.0
> Ahg325615 jgi|Araly1|325615|fgenesh1_pm.C_scaffold_6000835
Length=1428
Score = 2180 bits (1180), Expect = 0.0
Identities = 1346/1428 (94%), Gaps = 3/1428 (0%)
Strand=Plus/Plus
Query 118 ATGAGCATAAATAGGAATCTGTTGAATATCATAATAATCCTTTGTATATGTCTCAATTTG 177
|||||||||||||||||| |||||||||||||| | |||||||| ||||||||||||||
Sbjct 1 ATGAGCATAAATAGGAATTTGTTGAATATCATAGTTGTCCTTTGTGTATGTCTCAATTTG 60
Query 178 GGTTGTAACGATGGAGCTCAAGAAAGAGAGA---CTGATTCTCATACTATCCAAGTCAGC 234
||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 61 GGTTGTAACGAGGGAGCTCAAGAAAGAGAGATTGATGATTCTCATACAATCCAAGTCAGC 120
Query 235 TCTCTCCTCCCTTCATCATCATCATCTTGTGTTCTTTCTCCCAGAGCGTCTACTACAAAG 294
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTCTTCCCACCATCATCATCATCTTGTGTTCTTTCTCCCAGAGCGTCTACTACAAAG 180
Query 295 TCTTCACTGCACGTGACGCATAGACACGGCACGTGTTCGCGTCTAAACAATGGCAAGGCC 354
|| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 181 TCCTCACTGCACGTGACGCATAGGCACGGCACGTGCTCGCGTCTAAACAATGGCAAAGCC 240
Query 355 ACGAGTCCAGACCATGTCGAGATCCTAAGACTCGACCAGGCTCGCGTAAACTCAATCCAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ACGAGTCCAGACCATGTCGAGATCCTAAGACTCGACCAGGCTCGCGTAAACTCCATCCAC 300
Query 415 TCAAAACTATCGAAGAAACTCGCAACAGATCACGTCAGTGAAAGCAAGTCAACGGATCTA 474
|||||||| |||||||||||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct 301 TCAAAACTGTCGAAGAAACTCACAACAAATCACGTCAGTCAAAGCCAGTCAACGGATCTA 360
Query 475 CCGGCTAAAGACGGAAGCACACTCGGTTCAGGTAACTACATCGTGACGGTCGGCCTCGGG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CCGGCTAAAGACGGAAGCACACTCGGTTCAGGTAACTACATCGTGACGGTCGGACTCGGG 420
Query 535 ACACCAAAGAACGATCTATCACTAATCTTCGACACTGGAAGCGATTTAACGTGGACTCAG 594
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 ACACCAAAGAACGATCTATCACTAATCTTCGACACCGGAAGCGATTTAACGTGGACTCAA 480
Query 595 TGTCAGCCATGTGTTCGAACTTGCTATGACCAGAAGGAACCAATCTTTAACCCTTCTAAG 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TGTCAGCCATGTGTTCGAACTTGCTATGACCAAAAGGAACCAATCTTTAACCCTTCTAAG 540
Query 655 TCTACTTCTTACTACAACGTATCCTGCTCATCGGCTGCGTGTGGTTCTCTCTCTTCTGCT 714
|||||||||||||||||||| ||||| ||||| | ||||||||||| |||||||| |||
Sbjct 541 TCTACTTCTTACTACAACGTCTCCTGTTCATCATCAGCGTGTGGTTCCCTCTCTTCAGCT 600
Query 715 ACAGGAAACGCCGGAAGCTGTTCGGCTTCGAATTGCATCTACGGTATTCAATACGGCGAT 774
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAGGAAACGCCGGAAGTTGTTCGGCTTCGAATTGCATCTACGGTATTCAATACGGCGAT 660
Query 775 CAATCGTTCTCCGTCGGATTTCTCGCCAAGGAGAAGTTTACACTAACGAACTCCGACGTA 834
||||| |||||| |||| |||||||||||||| || ||||||||||||| ||||||||||
Sbjct 661 CAATCATTCTCCATCGGGTTTCTCGCCAAGGATAAATTTACACTAACGAGCTCCGACGTA 720
Query 835 TTTGACGGCGTTTATTTCGGTTGCGGCGAGAACAACCAAGGACTTTTCACCGGTGTCGCC 894
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 721 TTTGACGGTGTTTATTTCGGTTGTGGTGAGAACAACCAAGGACTTTTCACCGGTGTCGCC 780
Query 895 GGACTTCTCGGTCTTGGTCGTGACAAGCTTTCGTTTCCGTCGCAGACGGCAACGGCTTAC 954
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 781 GGACTTCTCGGTCTCGGCCGTGACAAGCTTTCATTTCCGTCGCAGACGGCTACGGCTTAC 840
Query 955 AATAAGATCTTCTCTTACTGCCTCCCTTCCTCCGCTAGCTACACCGGACATCTCACATTC 1014
||||| |||||||||||||| |||||||| ||||| ||||| |||||||||||||| |||
Sbjct 841 AATAAAATCTTCTCTTACTGTCTCCCTTCATCCGCAAGCTATACCGGACATCTCACCTTC 900
Query 1015 GGATCCGCCGGAATCTCCAGATCCGTTAAATTCACACCAATTTCAACCATCACTGATGGA 1074
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 901 GGATCCGCCGGAATCTCCAGATCCGTCAAATTCACGCCGATTTCAACCATCACTGATGGA 960
Query 1075 ACTTCCTTCTACGGCCTTAATATCGTCGCAATCACCGTCGGCGGTCAGAAATTGCCGATT 1134
|| || |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 961 ACCTCGTTCTACGGCCTTAATATCGTTGCAATCACCGTCGGCGGTCAAAAACTGCCGATT 1020
Query 1135 CCTTCAACTGTATTCTCTACTCCGGGAGCTTTAATCGATTCCGGCACCGTTATCACTCGT 1194
|||||||| || ||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 1021 CCTTCAACCGTGTTCTCAACTCCGGGAGCTTTAATCGATTCAGGAACCGTTATCACTCGT 1080
Query 1195 CTCCCGCCGAAAGCCTACGCGGCGTTAAGAAGCTCGTTCAAGGCGAAGATGTCAAAGTAT 1254
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 CTCCCGCCGAAAGCTTACGCGGCGTTACGAAGCTCGTTCAAGGCGAAGATGTCAAAGTAT 1140
Query 1255 CCGACCACGTCGGGCGTCTCGATCTTGGACACGTGTTTCGATCTCAGCGGGTTTAAGACG 1314
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 CCGACCACGTCAGGCGTCTCGATCTTGGACACGTGTTTCGATCTCAGCGGATTTAAGACG 1200
Query 1315 GTGACTATCCCGAAAGTGGCGTTCTCTTTCAGCGGTGGCGCCGTCGTGGAGCTTGGTTCG 1374
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1201 GTGACGATCCCGAAAGTGGCGTTCTCTTTCAGCGGTGGCGCCGTCGTGGAACTTGGCTCA 1260
Query 1375 AAAGGGATATTTTACGTGTTTAAGATATCTCAGGTTTGTCTGGCGTTTGCAGGGAATAGC 1434
||||| |||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1261 AAAGGAATATTTTACGCGTTTAAGATATCACAGGTTTGTTTGGCGTTTGCAGGGAATAGC 1320
Query 1435 GATGACAGTAACGCTGCCATCTTTGGAAACGTTCAGCAGCAAACGCTAGAAGTTGTGTAT 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GATGACAGTAACGCTGCCATCTTTGGAAACGTTCAGCAGCAAACGCTAGAAGTTGTGTAC 1380
Query 1495 GATGGTGCGGGTGGGCGGGTCGGGTTTGCTCCAAACGGGTGTAGTTAA 1542
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1381 GATGGTGCGGGTGGGCGGGTCGGGTTTGCTCCAAATGGGTGTAGTTAA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66162755565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5