BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G10780.2

Length=993
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325616 jgi|Araly1|325616|fgenesh1_pm.C_scaffold_6000836           854    0.0  


> Ahg325616 jgi|Araly1|325616|fgenesh1_pm.C_scaffold_6000836
Length=588

 Score =  854 bits (462),  Expect = 0.0
 Identities = 493/508 (97%), Gaps = 1/508 (0%)
 Strand=Plus/Plus

Query  144  ATGGACAAAGGCAAAGCAGTGATGGGTACTGGTCGGAGATGGGCCGTCGAATTCTCCGAT  203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGACAAAGGCAAAGCAGTGATGGGTACTGGTCGGAGATGGGCCGTCGAATTCTCCGAC  60

Query  204  CAATCTACTGTTCCATCTTCCCGTGACATCCTCGATCCACCTGGCTTCTCTCGTGCCTCT  263
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  61   CAATCTACTGTTCCATCTTCCCGTGACATCCTCGATCCACCTGGCTTCTCTCGTGCTTCT  120

Query  264  CAGGAACAGGATGATTCAGCAAACAGCCGCCAAAAGAAAGACGCTGAAGCTACTTGGAAA  323
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  121  CAGGAACAGGATGATTCAGCAAACAGCCGCCAAAAGAAAGACGCCGAAGCAACTTGGAAA  180

Query  324  CTTCAGAAAGCGTGGGAAGTAGCGCAATCTCCATTTAAGAATTTGATGATGATGGGTTTC  383
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  181  CTTCAGAAAGCGTGGGAAGTAGCGCAATCTCCGTTTAAGAATTTGATGATGATGGGTTTC  240

Query  384  ATGATGTGGATGGCTGGAAACACAGTTCATCTTTTTAGTATTGGTATTACTTTCTCTGCT  443
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  241  ATGATGTGGATGGCTGGAAACACTGTGCATCTTTTTAGTATTGGTATTACTTTCTCTGCT  300

Query  444  CTTTGGCAGCCTATCAGTGCTCTTCAGAGTGTTGGAAAGATTTTTGAGCCATTCAAGGAT  503
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  301  CTTTGGCAGCCTATCAGTGCTCTCCAGAGTGTTGGAAAGATTTTTGAGCCATTCAAGGAT  360

Query  504  AACAAAGTGGAACTACTTATGCCGAAATTAGTGTTCCTTGCCCTAAACCTTGGAGGGCTA  563
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  361  AACAAAGTGGAACTACTGATGCCGAAATTAGTGTTTCTTGCCCTAAACCTTGGAGGGTTA  420

Query  564  GCTTTGGGTGTCTGGAAGCTTAACACTTTGGGGCTTCTTCCAACACATGCATCAGATTGG  623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  421  GCTTTGGGTGTCTGGAAGCTTAACACTTTGGGGCTTCTTCCAACACATGCATCGGACTGG  480

Query  624  GTTTCATCTCTACCCCCTCCTCAG-TTG  650
            |||||||||||||| ||||||||| |||
Sbjct  481  GTTTCATCTCTACCTCCTCCTCAGGTTG  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36902983656


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5