BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10790.1
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487913 jgi|Araly1|487913|fgenesh2_kg.6__1047__AT5G10790.1 2952 0.0
> Ahg487913 jgi|Araly1|487913|fgenesh2_kg.6__1047__AT5G10790.1
Length=1771
Score = 2952 bits (1598), Expect = 0.0
Identities = 1715/1772 (97%), Gaps = 5/1772 (0%)
Strand=Plus/Plus
Query 77 AAGCGAATCTGAGTTTTGTTTTCATGTCCGCGAGGATTTCATTTCTGAAAAATCCCGATC 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCGAATCTGAGTTTTGTTTTCATGTCCGCGAGGATTTCATTTCTGAAAAATCCCGATC 60
Query 137 CGTGCAATCACTTATCTGATTATAAGCTTAGATATGGTACTGATGGTTACAAATCTTTCA 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTGCAATCACTTATCTGATTATAAGCTTAGATATGGTACTGATGGTTACAAATCTTTCA 120
Query 197 ATAACTTGTTCAGATGCTTCAACGATGCAAGGATTAAGATCAAACTTCAAGGAATCGACA 256
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 121 ATAACTTGTTCAGATGCTTCAACGATGGAAGAATTAAGATCAAACTTCAAGGATTCGACA 180
Query 257 TACCCAGATGCAGTTATTGTTCTGTTTATCAAAAGAGACTCTACATCTGTTTGATCTGTC 316
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 TACCCAGATGCAGTTATTGTTCCGTTTATCAAAAGAGACTCTACATCTGTTTGATCTGTC 240
Query 317 GTTCCATTTCTTGTTCAAGTCATATCCTTTTGCATACCCAGTTGAATAAAGGCCATGATA 376
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 GTTCCATTTCTTGTTCAAGTCATATCCTTTTGCATACCCAATTGAATAAAGGCCATGATA 300
Query 377 TCGCCATTGATGTCGAAAGATCTGAGCTTTATTGCTGTGCTTGCATCGATCAAGTGTATG 436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TCGCCATTGATGTCGAAAGATCTGAGCTTTATTGCTGTGCTTGCATCGATCAAGTGTACG 360
Query 437 ATTCTGAGTTCGACGAGGTTGTTGTGTCTAAGCAGCTTTTTGGTTTGGGTATGTCTGTTA 496
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ATCCTGAGTTCGACGAGGTTGTTGTGTCTAAGCAGCTTATTGGTTTGGGTATGTCTGTTA 420
Query 497 AATCAGGGGCTGATGTTGTTGCGGTTAGATCGAACAAGAAGAGGAGATTGGACTCGCAAT 556
|| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 AAGCCGGGGCTGATGTTGTTGCGGTTAGATCGAACAAGAAGAGGAGATTGGACTCTCAAT 480
Query 557 TGATCATAGGGTCGAATTTTTTGGTCTCACCTCGAGATCGAAGGGAGAAATGGACGTTTC 616
|||| || ||||| || ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 481 TGATTATTGGGTCCAAGTTTTTGGTCTCACCTCGAGATCGGAGAGAGAAATGGACGTTTC 540
Query 617 CTTTGGGGTTGAGAGGTTTGAACAATCTGGGAAGCACTTGTTTTATGAATGCTGTGTTGC 676
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTTGGGCTTGAGAGGTTTGAATAATCTGGGAAGCACTTGTTTTATGAATGCTGTGTTGC 600
Query 677 AAGCACTTGTTCATGCTCCTCCTTTGAGAAACTTTTGGTTGAGTGGTCAACATAATCGTG 736
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 AAGCACTTGTTCATGCTCCTCCTTTGAGAAACTTTTGGTTGAGTGGTCAGCATAATCGTG 660
Query 737 ATCTTTGTCCTAGAAGAACAATGGGTTTGTTGTGTTTGCCTTGTGATCTTGATGTTATCT 796
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCTTTGTCCCAGAAGAACTATGGGTTTGTTGTGTTTGCCTTGTGATCTTGATGTTATCT 720
Query 797 TCTCTGCTATGTTTTCTGGTGATCGGACTCCATATAGCCCTGCTCATTTGCTTTACAGTT 856
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTCTGCTATGTTCTCTGGTGATCGGACTCCATATAGCCCTGCTCATTTGCTTTACAGTT 780
Query 857 GGTGGCAGCACTCAACGAATCTAGCTACATATGAGCAGCAAGATTCTCACGAGTTCTTCA 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGTGGCAGCACTCAACGAATCTAGCTACATATGAGCAGCAAGATTCTCACGAGTTCTTCA 840
Query 917 TTTCGCTATTGGACCGTATCCATGAGAACGAAGGGAAGTCGAAATGTTTGTATCAAGATA 976
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 841 TTTCGCTATTGGACCGTATCCATGAGAATGAAGGAAAGTCGAAATGTTTGTATCAAGATC 900
Query 977 ATGAGGAGTGTCAGTGTATCACCCACAAGGCATTCTCTGGTCTTTTAAGATCAGATGTCA 1036
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 901 ATGAGGAGTGTCAATGTATTACTCACAAGGCATTCTCTGGTCTTTTAAGATCAGATGTCA 960
Query 1037 CCTGTACAACATGTGGATCCACATCAACAACATATGACCCGTTTATCGACATTTCACTTA 1096
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCTGCACAACATGCGGATCCACATCAACAACATATGACCCGTTTATCGACATTTCACTTA 1020
Query 1097 CTTTAGATTCAATGAATGGATTCTCTCCCGCTGATTGCAGAAAGAACAGATACAGTGGTG 1156
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTTTAGATTCAGTGAATGGATTCTCTCCCGCTGATTGCAGAAAGAACAGATACAGTGGTG 1080
Query 1157 GACCAAGTGTGAACGCAATCATGCCAACTCTCTCGGGTTGCTTAGATTTCTTCACACGGT 1216
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GACCAAGTGTGAACGCAACCATGCCAACTCTCTCGGGTTGCTTAGATTTCTTCACACGGT 1140
Query 1217 CAGAGAAACTCGGTCCAGACCAGAAACTAAACTGCCAAAGCTGTGGAGAAAAGAGAGAAT 1276
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CAGAAAAACTTGGTCCGGACCAGAAACTAAACTGCCAAAGCTGTGGAGAAAAGAGAGAAT 1200
Query 1277 CTTCGAAACAAATGTCTATAAGAAGACTTCCTCTGCTTCTTTGCTTGCACGTAAAGCGTT 1336
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1201 CTTCGAAACAAATGTCAATAAGAAGACTTCCTCTGCTTCTTTGCTTGCATGTAAAGCGTT 1260
Query 1337 TCGAACATTCTCTTACCCGTAAAACCTCGAGAAAAATTGATAGCTACTTGCAGTATCCGT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCGAACATTCTCTTACCCGTAAAACCTCGAGAAAAATTGATAGCTACTTGCAGTATCCGT 1320
Query 1397 TCCGCCTAAACATGTCTCCTTACCTCTCTTCCTCCATCATCGGAAAGCGGTTTGGGAACA 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TCCGCCTAAACATGTCTCCTTACCTCTCTTCCTCCATCATCGGAAAGCGGTTTGGGAACA 1380
Query 1457 GAATATTTGCCTTTGATGGAGAAGGTGAGTATGACAGTTCGTCATCATCATCTCCATCAG 1516
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 1381 GAATATTTGCCTTTGATGGAGAGGGCGAGTATGACAGTTCATCATCATCATCTCCATCAG 1440
Query 1517 CGGAGTTTGAGATATTTGCGGTTGTGACACACA-AGGGGATGTTGGAATCAGGTCACTAT 1575
|||| |||||||||||||||||||| || ||| |||| |||||||||||||||||||||
Sbjct 1441 CGGAATTTGAGATATTTGCGGTTGTAACTCACTCAGGG-ATGTTGGAATCAGGTCACTAT 1499
Query 1576 GTGACGTATCTGAGGCTTAAAGGGTTGTGGTATAGATGTGATGATGCATGGATCAATGAG 1635
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1500 GTGACGTATCTGAGGCTTAAAGGGTTGTGGTATAGATGCGATGATGCATGGATCAATGAG 1559
Query 1636 GTTGAAGAAGAAGTGGTGAGAGGATGTGAGTGTTACATGTTGTTCTATGCACAAGAGACA 1695
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 1560 GTTGAAGAAGAAGTGGTGAGAGGATGTGAATGTTACATGTTGTTCTATGCACAAGAAAGA 1619
Query 1696 GTGATTCAAAAAGCTCATAAGGAGTTGAGTTATCAAGTTATCTCCATGGCTGATGCATTT 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GTGATTCAAAAAGCTCATAAGGAGTTGAGTTATCAAGTTATCTCCATGGCTGATGCATTT 1679
Query 1756 CCCTTTGCTGATTGCTGACTCTTA--A-CTTGGCCAAAGATTTTGACGCATTTTCCCTTA 1812
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1680 CCCTTTGCTGATTGCTGACTCTTATTAACTTGGCCAAAGATTTTGACGCATTTTCCCTTA 1739
Query 1813 CTACtttttttAATTGATTTAAGGTTTATGCC 1844
|||||||||| ||| ||||||||||||||||
Sbjct 1740 ATACTTTTTTTTATTCATTTAAGGTTTATGCC 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69362336145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5