BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G10810.1

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940554 jgi|Araly1|940554|scaffold_601098.1                        566    8e-161


> Ahg940554 jgi|Araly1|940554|scaffold_601098.1
Length=374

 Score =  566 bits (306),  Expect = 8e-161
 Identities = 351/373 (94%), Gaps = 2/373 (1%)
 Strand=Plus/Plus

Query  58   GAAGTCACAA-TATCACTCGAAGATGGCTAATCACAACAGTAGTAGGCACACAATCATCT  116
            ||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    GAAGTCA-AACTATCACTTGAAGATGGCTAATCACAACAGTAGTAGGCACACCATCATCT  59

Query  117  TGTTGCAGAATTCTCCGAGCAGAGCTACGAGGACTTTCATGGACTATGACTCTATAGGCC  176
            ||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct  60   TGTTGCAAAATTCTCCCAGCAGAGCTACCAGGACTTTCATGGACTATGATTCTATAGGCC  119

Query  177  AAGCTATGGATGGTATTTGCGGCTTATATGAAAGGAAGTTGAAGGAAATTAACCCTTCTC  236
            ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct  120  AAGCTATGGATGGTATTTGCGGCATATACGAAAGGAAGTTGAAGGAAATTAACCCTTCTC  179

Query  237  TCAGAAATATTAGCTATGACATTGCTGACCTTTACAATTTTATTGATGGTCTTGCTGACT  296
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  180  TCAGAAATATTAGCTATGACATTGCTGACCTTTACAATTTTATTGACGGTCTTGCTGACT  239

Query  297  TGAGCGCTTTGGTCTATGACCACTCGATAAGTGCATATCTGCCATATGACAGGCAATGGA  356
            ||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct  240  TGAGCGCTTTGGTCTATGAACACTCGATCAGCGCATATCTGCCATACGACAGGCAATGGA  299

Query  357  TTAAGCAGAAGGCATTTCACCATCTGAAGAGAATTGCCAATGGAGGCAGATGAAGAAGAA  416
            |||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||| ||
Sbjct  300  TTAAGCAGAAAGCATTTAACCATCTCAAGAGAATTGCCAATGGAAGCAGATGAAGAAAAA  359

Query  417  GCATCATATGAAA  429
             |||||| |||||
Sbjct  360  ACATCATTTGAAA  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23445593955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5