BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10820.1
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487915 jgi|Araly1|487915|fgenesh2_kg.6__1049__AT5G10820.1 2519 0.0
> Ahg487915 jgi|Araly1|487915|fgenesh2_kg.6__1049__AT5G10820.1
Length=1549
Score = 2519 bits (1364), Expect = 0.0
Identities = 1493/1555 (96%), Gaps = 9/1555 (1%)
Strand=Plus/Plus
Query 18 TTTCAGATCCAATGTTCATCTCCTAAACAGTCAACACCATGGAAACACTAGAAACTGAGA 77
||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 1 TTTCAGATCCAATGTTCATCTTCTAAACAGTGAAGACCATGGAAACACTAGAAACTGAGA 60
Query 78 AATTCTTCTCAGACGATAAACCTCTCCTAAAACCAATTTCAGATCATTCTGAGATCAAGA 137
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AATTCTTCTCAGACGATAAACCTCTGCTAAAACCAATTTCAGATCATTCTGAGATCAAGA 120
Query 138 CAAAAGCAAGAAGAAACGCTGTCGTCTCAGTTCTAATTCAGCCCTTCCAATGGTTACAAA 197
|| | ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 121 CATATGCAAGAAGAAACGCTGTTGTCTCAGTTCTACTTCAGCCCTTCCAATGGTTGCAAA 180
Query 198 TGCTGAGTTCTAGGCTAAACCTGAGCTTCGTGCTAGGTGTGGTCCTTGTGTACGGTGTAA 257
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 181 TGCTGAGTTCTAGGCTAAACCTAAGCTTTGTGCTAGGTGTGGTCCTTGTGTACGGCGTAA 240
Query 258 ACCAAGGGTTCTCTGGTTCGATATTCAAAGTCGTCACAGACTATTACTGGAAAGATGTCC 317
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCAAGGGTTCTCTGGTTCAATATTCAAAGTCGTCACAGACTATTACTGGAAAGATGTCC 300
Query 318 AGCAAGTGCAGCCATCGGTTGTGCAGCTTTACATGGGGTTATATTACATTCCATGGGTCA 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCAAGTGCAGCCATCGGTTGTGCAGCTTTACATGGGGTTATATTACATTCCATGGGTCA 360
Query 378 TGAGACCCATTTGGGGTCTCTTCACCGATGTGTTCCCTATCAAAGGTTACAAAAGAAAGC 437
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 361 TGAGACCTATTTGGGGTCTCTTCACCGATGTTTTCCCCATCAAAGGTTACAAAAGAAAGC 420
Query 438 CGTATTTTGTAGTTTCTGGTGTTCTTGGTTTGGTATCTGCGATTGCTATTGTTGTTCTTG 497
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 CTTATTTTGTAGTTTCTGGTGTTCTTGGTTTGGTATCTGCGATTGCTATTGCTGTTCTTG 480
Query 498 GTAAGTTGCCCGCTGCTTTGGCTTTGAGCTGCCTCTTAGGTGTCTCTGCAGCTATGGCCA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTAAGTTGCCCGCTGCTTTGGCTTTGAGCTGCCTCTTAGGTGTCTCTGCAGCTATGGCCA 540
Query 558 TTGCAGATGTGGTGATTGATGCGTGTATAGCAACAAACAGCATCAATATCCGATCTTTGG 617
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TTGCAGATGTGGTGATTGATGCGTGTATAGCAACAAATAGCATCAATATCCGATCTTTGG 600
Query 618 CTCCTGATATACAGAGCCTTTGTATGGTTTGTTCATCTGCTGGCGCTTTGGTTGGATACG 677
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 CCCCTGATATACAGAGCCTTTGTATGGTTTGTTCTTCTGCTGGCGCTTTGGTTGGATACG 660
Query 678 CAACTAGTGGAGTCTTCGTTCACCAGCTTGGACCTCAGGGAGCATTAGGGGTATTAGCAT 737
|||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 661 CAACTAGTGGAGTCTTTGTTCACCGGCTTGGACCACAGGGAGCATTAGGGGTGTTAGCAT 720
Query 738 TTTCGCCTGCAACTATCGTCATACTTGGGTTTTTCATCTACGAGAAAAGATCTTCTACTG 797
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 TTTCGCCTGCAACTATCGTCATACTTGGGTTTTTCATCTACGAGAAAAGATTTTCTACTG 780
Query 798 TTCCTACACA-AAAGACCAAAAAGGACACAGATGGCTTAGGAGTAGCGGTGAAGGGAATG 856
||| || ||| ||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 TTCTTATACAGAAAAAC-AAAAAGGACACAGATGGCTTAGGAGTAGCAGTGAAGGGAATG 839
Query 857 TGCAAAACAGTAAAGTACCCTGAAGTGTGGAAGCCATCTCTTTACATGTTCATATCCTTA 916
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 TGCAAAACAATAAAGTACCCTGAAGTGTGGAAGCCATCACTTTACATGTTCATATCCTTA 899
Query 917 GCTCTCAACATCAGCACTCATGAAGGCCACTTCTACTGGTACACTGATCCTACAGCTGGG 976
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCCCTCAACATCAGCACTCATGAAGGCCACTTCTACTGGTACACTGATCCTACAGCTGGG 959
Query 977 CCCGCCTTTTCCCAGGAGTTTGTGGGAATAATCTATGC-AGTCGGGGCATTGGCATCTAT 1035
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 960 CCCGCCTTTTCCCAGGAGTTTGTGGGAATAATCTATGCGA-TCGGGGCATTGGCATCTAT 1018
Query 1036 GTTTGGAGTTCTCATATATCACAAGAAGCTCAAAGGCTATTCCTTTAGGAACATACTCTT 1095
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 GTTTGGAGTTCTCATATACCACAAGAAGCTTAAAGGCTATTCCTTTAGGAACATACTCTT 1078
Query 1096 CTTTGCACAACTTCTATACGTCTTCTCAGGAATGCTTGATCTAGTCTTCATCAAACGCTG 1155
||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1079 CTTCGCACAGCTTCTATACGTCTTCTCAGGAATGCTTGATCTAGTCTTCATCAGACGCTG 1138
Query 1156 GAACTTAACTCTCGGGATACCAGATTCCTTGTTTGTGATAACCGAAGAATCTTTCACGAA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1139 GAACTTAACTCTCGGGATACCAGATTCCTTGTTTGTGATAACCGAAGAATCAGTCACGAA 1198
Query 1216 GATGATAAGTAAGATCAGGTGGATCCCCATGGTGGTTCTCAGTACAAGGCTTTGTCCTCT 1275
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1199 GATAATAAGTAAGATCAGGTGGATCCCCATGGTGGTTCTCAGCACAAGGCTCTGTCCTCT 1258
Query 1276 GGGAATCGAAGGCACCTTCTTTGCTTTCCTCATGTGCATTGATAGTTTTGGACAGCTTGC 1335
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1259 GGGAATCGAAGGAACCTTCTTTGCTTTCCTCATGTGCATTGATAGTTTTGGACAACTTGC 1318
Query 1336 TTCTAAATGGGGTGGAGGGTTTGTTCTTCACGCTTTTGGTGTCACGAGACACGA-TTTCG 1394
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 1319 TTCTAAATGGGGTGGGGGGCTTGTTCTTCACGCTTTTGGTGTCACGAGACACGAGTTTGG 1378
Query 1395 GAAATCTCTGGCTCGTGATTCTGATAAGGAATATTTTGAGACTCGTCACTGTGTGTTTCG 1454
||| |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 1379 GAA-TCTCTGGCTCGTGATTCTTATAAGGAATCTCTTGAGACTCGTCACTGTGTGTTTCG 1437
Query 1455 TTTTCCTCGTTCCAGATTCCGATCATTTGGATGATCTTGTACCTTCTGATGTGTTGCCAA 1514
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1438 TTTTCCTCGTTCCAGATTCCGATCATTTGGATGATCTTGTACCCTCTGATGTGTTGCCAA 1497
Query 1515 AGAAACAATCAGAAGATGATGATGATGACGACATTAAACTTTTGCTTCTGTAAAG 1569
||||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct 1498 AGAAACAATCAGAAGATGATGATGACGAC-A-AT-AAACTTTTGCTTCTGTAAAG 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60563489550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5