BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10830.1
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487916 jgi|Araly1|487916|fgenesh2_kg.6__1050__AT5G10830.1 1279 0.0
> Ahg487916 jgi|Araly1|487916|fgenesh2_kg.6__1050__AT5G10830.1
Length=835
Score = 1279 bits (692), Expect = 0.0
Identities = 773/813 (95%), Gaps = 2/813 (0%)
Strand=Plus/Plus
Query 21 aaagaagaagcaaaacagagagaaaaTGGCAGGATTGTTTGATAAACAAGCCGATCTATA 80
|||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAAGAAAAAGCAAAACACAGAGAAAATGGCAGGACTGTTTGATAAACAAGCCGATCTATA 60
Query 81 CCTTGACGCCAGACCTAATTACCCCTCTGAGTGGTTCTCGAAGCTCGCTGATCTCACCGA 140
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CCTTGACGCCAGGCCTAATTACCCCTCAGAGTGGTTCTCGAAGCTCGCTGATCTCACCGA 120
Query 141 TCACCACGGTTTAGCCTGGGATGCTGCCACCGGAAATGGCCAAGCAGCTCTCGCCGTTGC 200
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 121 TCACCACGGTTTAGCCTGGGATGCTGCCACCGGCAACGGCCAAGCAGCTCTCGCCGTTGC 180
Query 201 AGAGCATTACGAGAGTGTCG-TAGCAACGGACGTGAGTGAATCGCAGCTGAAGCTAGCAA 259
|||||| |||||||| || | |||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AGAGCACTACGAGAGAGT-GATAGCAACGGACGTGAGCGAATCGCAGCTGAAGCTAGCAA 239
Query 260 CGCCACATCCGAAAATCAATTATCGCCATACGCCGACGTCAATGACCGACGACGAGCTAG 319
|||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 240 CGCCACATCCGAGGATCAGTTATCGCCATACGCCGTCCTCAATGACCGACGACGAGCTAG 299
Query 320 TGGAATTAATCGGAGGAGAAAACTCAGTGGATCTAATCACGGTCGCCCAAGGCGTACACT 379
||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 300 TGGAATTAATCGGAGGAGAGAACTCAGTGGATCTGATCACAGTCGCTCAAGGTGTACACT 359
Query 380 GGTTCGATCTCCCTAGGTTCTACTCAGTGGCCACACGACTCCTCCGTAAACCAGGCGGAA 439
||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||
Sbjct 360 GGTTCGATCTCCCTAGGTTCTACGCAGTGGCCACACGCCTTCTCCGTAAACCCGGCGGAA 419
Query 440 TCATCGCTGTCTGGGGATACAACGACGTCATAGTGAGTCCAGAGTTCGACGCCGTCCAGT 499
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCATCGCCGTCTGGGGATACAACGACGTCATAGTGAGTCCAGAGTTCGACGCCGTCCAGT 479
Query 500 ATCGGCTCCACGCCACAACGCTGCCGTTTTGGAAGTATCCGTACATTCAGCACATCTTCG 559
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCGGTTCCACGCCACAACGCTGCCGTTTTGGAAGTATCCGTACATTCAGCACATCTTCG 539
Query 560 ATTCGTACGAAGCATTGCCGTTTCCTTTCGAAAATGTTGGGATGGGATCAGAAGGGGAGC 619
||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||
Sbjct 540 ATTCGTACGAAGCATTGCCGTTTCCTTTCGAAAGTGCGGGGATGGGATCAGAAGGGAAGC 599
Query 620 CATTAAAGCTGGAGATGCCTAAAACGACGTCGTTTGAAGGGATCATAAGGATGTTTAAAT 679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 600 CATTGAAGCTGGAGATGCCTAAAACGACGTCGTTTGAAGGGATCATAAGGATGTTCAAGT 659
Query 680 CATGGTCGGCCATCGTCACGGCGAGAGAGAAAGGCGTCGAGTTGTTACCGGAGAGTTTGG 739
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CATGGTCGGCTATCGTCACGGCGAGAGAGAAAGGCGTCGAGTTGTTACCGGAGAGTTTGG 719
Query 740 TGAGAGAGCTTGAAACCGCTTGGGGAGGTTCTGATCTGGTTCGTTCCGTCGTTTACAAAG 799
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 720 TGAGAGAGCTTGAGACCGCTTGGGGAAGATCTGATCTGGTTCGTTCCGTCGTTTACAAAG 779
Query 800 CTTTTATGATTGCAGGAAAAGTTAGAGTTTGAT 832
|||||||||| ||||||||||||||||||||||
Sbjct 780 CTTTTATGATAGCAGGAAAAGTTAGAGTTTGAT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33433798209
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5