BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10840.1
Length=2250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940557 jgi|Araly1|940557|scaffold_601101.1 3400 0.0
Ahg942065 jgi|Araly1|942065|scaffold_602609.1 2211 0.0
Ahg478776 jgi|Araly1|478776|fgenesh2_kg.3__1477__AT3G13772.1 630 1e-179
> Ahg940557 jgi|Araly1|940557|scaffold_601101.1
Length=1995
Score = 3400 bits (1841), Expect = 0.0
Identities = 1943/1993 (97%), Gaps = 3/1993 (0%)
Strand=Plus/Plus
Query 60 TCTTCCTTCGTGTGGAACAGCC-ATGGCTATGGAGTTTCTGAGGAGCAGTAGAAGAATAT 118
|||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 1 TCTTCCTT-GTGTGGAACAGCCAATGGCTATGGAGTTTCGGAGGAGCAGTAGAAGTATAT 59
Query 119 TGGAATCTTCTGGATGCGCGATCGCTTTGATTTTTCTGCTCTTCATCCATGGAGCTCACT 178
|||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||| |||
Sbjct 60 CGGAATCTTCTGGATCCGCGATCGCCTTGATTCTTCTGCTCTTCATCCATGGCGCTAACT 119
Query 179 CATTCTATCTCCCAGGTGTTGCTCCTCAGGATTTCGAGAAGGGTGATGAGCTGAAGGTGA 238
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 CTTTCTATCTCCCAGGTGTTGCTCCTCAGGATTTCGAAAAGGGTGATGAGCTGAAGGTGA 179
Query 239 AAGTGAATAAATTAACTTCCATAAAGACTCAGCTTCCATACTCGTATTACTCCCTTCCTT 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 AAGTGAATAAATTAACTTCCATAAAGACTCAGCTTCCATACTCCTATTACTCCCTTCCTT 239
Query 299 TTTGTCGCCCTAGCAAGATTGTGGACAGTACTGAGAATCTTGGAGAAGTGCTTCGGGGTG 358
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTGTCGTCCTAGCAAGATTGTGGACAGTACTGAGAATCTTGGAGAAGTGCTTCGGGGTG 299
Query 359 ACCGGATTGAGAATGCCCCATACTCGTTTAAAATGCGGGAGGCACAAATGTGCAATATTC 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACCGGATAGAGAATGCCCCATACTCGTTTAAAATGCGGGAGGCACAAATGTGCAATATTC 359
Query 419 TCGGCCGGGTCACTCTTGATGCCAAGACAGCTAAAGCGTTTAAAGAAAAGATCGATGATG 478
|| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 360 TCTGCCGGGTCACTCTTGATGCAAAGACAGCAAAAGCTTTTAAAGAAAAGATCGATGATG 419
Query 479 AGTACCGGGTCAACATGATCCTCGACAACCTTCCTCTGGTTGTTCCAATTGAAAGAGTCG 538
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 420 AGTACCGGGTCAACATGATCCTCGACAACCTTCCTCTAGTTGTTCCAATCGAAAGAGTCG 479
Query 539 ACCAGGGTTCTCCCTCTGTTGTTTATCAGCTTGGTTATCATGTTGGTCTTAAAGGCCAGT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 ACCAGGGTTCTCCCTCTGTTGTTTATCAGCTTGGTTATCATGTTGGTCTTAAAGGCCAAT 539
Query 599 ACGAGGGGAGCAAAGAGCAGAAGTTCTTTATGCACAATCACTTGGCATTTACAGTCCGCT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACGAGGGGAGCAAAGAGCAGAAGTTCTTTATGCACAATCACTTGGCATTTACAGTCCGCT 599
Query 659 ATCACAGAGATATCCAAACTGATGCTGCAAGAATCGTGGGATTTGAGGTTAAACCTTACA 718
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 ATCACAGAGATATCCAAACTGATGCTGCAAGAATCGTGGGATTTGAGGTCAAACCTTACA 659
Query 719 GTGTGAAGCATGAGTATGAGGGAGAGTGGAGTGAGAAGACCCGTCTGACGACTTGTGATC 778
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 660 GTGTGAAGCATGAGTATGAGGGAGAGTGGAGTGAGAAGACCCGTCTGACAACATGTGATC 719
Query 779 CTCACACGAAACGCCTGGTCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAAAAGAAGG 838
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTCATACGAAACGCCTGGTCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAAAAGAAGG 779
Query 839 AGATTATCTTCACATATGACGTCGATTTCCAGGAAAGTGAAGTGAAGTGGGCATCTAGAT 898
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGATTATCTTCACATATGATGTCGATTTCCAGGAAAGTGAAGTGAAGTGGGCATCTAGAT 839
Query 899 GGGATACTTATCTTCTGATGAGTGATAACCAAATCCACTGGTTCTCTATCGTCAATTCTC 958
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 840 GGGATACTTATCTTCTTATGAGTGATAACCAAATTCACTGGTTCTCTATCGTCAATTCTC 899
Query 959 TGATGATCGTCCTATTCCTATCTGGTATGGTGGCAATGATAATGCTGAGGACCCTTTACC 1018
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGATGATCGTCCTATTCCTGTCTGGTATGGTGGCAATGATAATGCTGAGGACCCTTTACC 959
Query 1019 GTGACATTTCACGATACAACGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAGACAGGAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTGACATTTCACGATACAACGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAGACAGGAT 1019
Query 1079 GGAAGCTTGTCCATGGTGATGTTTTCAGACTTCCTACCAATTCTGATCTGCTCTGCGTCT 1138
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1020 GGAAGCTTGTCCATGGTGATGTTTTCAGGCTTCCTACCAATTCTGATCTGCTCTGCGTTT 1079
Query 1139 ATGTTGGAACAGGGGTCCAGTGTCTAGGCATGGTATTTGTCACAATGATCTTCGCCATGC 1198
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACGTTGGAACAGGGGTCCAGTGTCTAGGCATGGTATTTGTCACAATGATCTTCGCCATGC 1139
Query 1199 TCGGATTTCTCTCCCCTTCCAATCGGGGTGGTCTGATGACTGCAATGCTCTTGCTCTGGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCGGATTTCTCTCCCCTTCCAATCGGGGTGGTCTGATGACTGCAATGCTCTTGCTCTGGG 1199
Query 1259 TCTTCATGGGACTCTTTGCTGGTTACGCCTCTTCACGTCTCTACAAAATGTTCAAAGGAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCTTCATGGGACTCTTTGCTGGTTACGCCTCTTCACGTCTCTACAAAATGTTCAAAGGAA 1259
Query 1319 CAGAGTGGAAGAGAATCGCTTTCAGAACAGCCTTCTTGTTTCCTGCAGTTGTGTCAGCAA 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1260 CAGAGTGGAAGAGAATCGCTTTCAGAACAGCCTTCTTGTTTCCTGCAGTTGTTTCAGCAA 1319
Query 1379 TCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAGAAGTCATCTGGGGCTGTCCCCTTTG 1438
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1320 TCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAGAAGTCATCCGGGGCTGTCCCCTTTG 1379
Query 1439 GAACAATGTTCGCCTTGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTGTTG 1498
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GGACAATGTTTGCCTTGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTGTTG 1439
Query 1499 GGGGTTACATTGGGTTCAAGAAGCCAGCGGCTGATGACCCAGTGAAAACCAACAAAATCC 1558
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1440 GGGGTTACATCGGGTTCAAGAAGCCAGCAGTTGATGACCCAGTGAAAACCAACAAAATCC 1499
Query 1559 CGAGGCAAATCCCAGAGCAAGCTTGGTACATGAACCCGGTTTTCTCAATCCTCATTGGAG 1618
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CGAGGCAAATTCCAGAGCAAGCTTGGTACATGAACCCGGTTTTCTCAATCCTCATTGGAG 1559
Query 1619 GAATCTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GAATCTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGC 1619
Query 1679 TCAACCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTTTGTAATCCTCATTGTGA 1738
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1620 TCAATCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTTTGTAATCCTCATCGTGA 1679
Query 1739 CTTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGACTACCTTT 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CTTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGACTACCTTT 1739
Query 1799 GGTGGTGGAGATCATACCTCACATCAGGCTCATCAGCTCTCTACCTCTTCCTCTATGCCA 1858
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1740 GGTGGTGGAGATCTTACCTCACATCAGGCTCATCAGCTCTCTACCTCTTCCTCTACGCCA 1799
Query 1859 CGTTCTACTTCTTCACAAAGCTTCAGATCACCAAACTGGTCTCTGCGATGCTTTACTTTG 1918
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1800 CGTTCTACTTCTTCACAAAGCTTCAGATAACCAAACTGGTCTCGGCGATGCTTTACTTTG 1859
Query 1919 GGTACATGCTCATCGCCTCCTACGCATTTTTTGTGCTCACAGGAACAATAGGGTTCTATG 1978
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 GGTACATGCTCATCGCGTCTTACGCATTTTTTGTGCTCACAGGAACAATAGGGTTCTATG 1919
Query 1979 CTTGTCTCTGGTTCACAAGGCTCATCTATTCCTCTGTTAAGATCGATTAGAGGATA-TGA 2037
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1920 CTTGTCTCTGGTTCACAAGGCTCATCTATTCCTCTGTTAAGATCGATTAGAGGATAATGA 1979
Query 2038 TGATCATCATGGC 2050
|||||||||||||
Sbjct 1980 TGATCATCATGGC 1992
> Ahg942065 jgi|Araly1|942065|scaffold_602609.1
Length=1975
Score = 2211 bits (1197), Expect = 0.0
Identities = 1670/1899 (88%), Gaps = 30/1899 (2%)
Strand=Plus/Plus
Query 146 TGATTTTTCTGCTCTTCATCCATGGAGCTCACTCATTCTATCTCCCAGGTGTTGCTCCTC 205
||||| |||| ||||| |||||||| ||| |||| || || || || |||||||||||||
Sbjct 67 TGATTCTTCTTCTCTTTATCCATGGCGCTTACTCTTTTTACCTTCCTGGTGTTGCTCCTC 126
Query 206 AGGATTTCGAGAAGGGTGATGAGCTGAAGGTGAAAGTGAATAAATTAACTTCCATAAAGA 265
|||||||||| ||||| ||||| |||| |||||||| || || || || || || ||||
Sbjct 127 AGGATTTCGAAAAGGGAGATGAATTGAAAGTGAAAGTAAACAAGTTGACATCTATTAAGA 186
Query 266 CTCAGCTTCCATACTCGTATTACTCCCTTCCTTTTTGTCGCCCT-AGCAAGATTGTGGAC 324
|||||||||| || ||||||||||| ||||||||||| || ||| || |||||||| |||
Sbjct 187 CTCAGCTTCCGTATTCGTATTACTCTCTTCCTTTTTGCCGTCCTAAG-AAGATTGTCGAC 245
Query 325 AGTACTGAGAATCTTGGAGAAGTGCTTCGGGGTGACCGGATTGAGAATGCCCCATACTCG 384
||||||||||||||||| ||||||||||| |||||||| || || ||||| || || |||
Sbjct 246 AGTACTGAGAATCTTGGTGAAGTGCTTCGCGGTGACCGAATCGAAAATGCTCCTTATTCG 305
Query 385 TTTAAAATGCGGGAGGCACAAATGTGCAATATTCTCGGCCGGGTCACTCTTGATGCCAAG 444
||||||||||| ||||||||||||||||||||||||||||| || || |||||||| |||
Sbjct 306 TTTAAAATGCGTGAGGCACAAATGTGCAATATTCTCGGCCGTGTTACGCTTGATGCAAAG 365
Query 445 ACAGCTAAAGCGTTTAAAGAAAAGATCGATGATGAGTACCGGGTCAACATGATCCTCGAC 504
| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||
Sbjct 366 TCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTACCGGGTTAACATGATCCTTGAT 425
Query 505 AACCTTCCTCTGGTTGTTCCAATTGAAAG-A--G-T-C-GACCAGGGTTCTCCCTCTGTT 558
|| |||||||| || |||||||| ||||| | | | | | ||||||||||| ||||||
Sbjct 426 AATCTTCCTCTAGTGGTTCCAATCGAAAGAATTGATCCGGGTCAGGGTTCTCCTTCTGTT 485
Query 559 GTTTATCAGCTTGGTTATCATGTTGGTCTTAAAGGCCAGTACGAGGGGAGCAAAGAGCAG 618
|| |||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 486 GTGTATCAGCTAGGCTATCATGTTGGTCTTAAAGGCCAGTATGAAGGGAGCAAAGAGCAA 545
Query 619 AAGTTCTTTATGCACAATCACTTGGCATTTACAGTCCGCTATCACAGAGATATCCAAACT 678
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 546 AAGTACTTTATGCACAATCACTTGGCATTTACTGTCCGGTATCACAGAGATATGCAAACC 605
Query 679 GATGCTGCAAGAATCGTGGGATTTGAGGTTAAACCTTACAGTGTGAAGCATGAGTATGAG 738
||||||||||| || |||||||||||||||||||| |||||||| |||||||| || |||
Sbjct 606 GATGCTGCAAGGATTGTGGGATTTGAGGTTAAACCATACAGTGTTAAGCATGAATACGAG 665
Query 739 GGA-GAGTGGAGTGAGAAGACCCGTCTGACGACTTGTGATCCTCACACGAAA-CGCCTGG 796
||| | |||||||||||||||||| |||| || |||||||| ||||| ||| |||||||
Sbjct 666 GGACCA-TGGAGTGAGAAGACCCGTTTGACTACCTGTGATCCCCACAC-AAAGCGCCTGG 723
Query 797 TCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAA-AAGAAGGAGATTATCTTCACATAT 855
| |||||||| ||||||||||||||||| ||| || |||||||| |||||||||||||||
Sbjct 724 TTGTTAGCTCAGCTACCCCTCAAGAAGTCGAA-AATAAGAAGGAAATTATCTTCACATAT 782
Query 856 GACGTCGA-TTTCCAGGAAAGTGAAGTGAAGTGGGCATCTAGATGGGATACTTATCTTCT 914
|| || || ||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 783 GATGTTGACTTT-CAGGAAAGTGAAGTGAAGTGGGCGTCTAGATGGGATGCTTATCTTCT 841
Query 915 GATGAGTGATAACCAAATCCACTGGTTCTCTATCGTCAATTCTCTGATGATCGTCCTATT 974
|||||| || || ||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 842 GATGAGCGACAATCAAATTCACTGGTTCTCTATCGTCAACTCTCTGATGATCGTCCTCTT 901
Query 975 CCTATCTGGTATGGTGGCAATGATAATGCTGAGGACCCTTTACCGTGACATTTCACGATA 1034
||| ||||||||||| || ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 902 CCTTTCTGGTATGGTAGCGATGATTATGCTAAGGACCCTTTACCGTGACATTTCACGGTA 961
Query 1035 CAACGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAGACAGGATGGAAGCTTGTCCATGG 1094
||||||||| ||||||||||| ||||||||||||||||| || ||||| || ||||||||
Sbjct 962 CAACGAGCTTGAGACTCAAGAGGAAGCTCAAGAAGAGACTGGGTGGAAACTCGTCCATGG 1021
Query 1095 TGATGTTTTCAGACTTCCTACCAATTCTGATCTGCTCTGCGTCTATGTTGGAACAGGGGT 1154
||||||||||| | ||| |||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 1022 CGATGTTTTCAGGCCTCCAACCAATTCAGATCTTCTCTGCGTCTATGTTGGCACAGGTGT 1081
Query 1155 CCAGTGTCTAGGCATGGTATTTGTCACAATGATCTTCGCCATGCTCGGATTTCTCTCCCC 1214
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| || ||
Sbjct 1082 CCAGTGTTTAGGCATGGTACTTGTCACTATGATCTTCGCCATGCTCGGATTTCTATCACC 1141
Query 1215 TTCCAATCGGGGTGGTCTGATGACTGCAATGCT-CTTGCTCTGGGTCTTCATGGGACTCT 1273
|||||| || || ||||| ||||| || ||||| ||| ||||||||||||||||| ||||
Sbjct 1142 TTCCAACCGTGGAGGTCTTATGACAGCCATGCTCCTT-CTCTGGGTCTTCATGGGCCTCT 1200
Query 1274 TTGCTGGTTACGCCTCTTCACGTCTCTACAAAATGTTCAAAGGAACAGAGTGGAAGAGAA 1333
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1201 TTGCCGGTTACGCCTCTTCACGTCTCTACAAAATGTTCAAAGGAACAGAATGGAAGAGAA 1260
Query 1334 TCGCTTTCAGAACAGCCTTCTTGTTTCCTGCAGTTGTGTCAGCAATCTTCTTTGTCCTAA 1393
| || |||||||||||||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 1261 TTGCCTTCAGAACAGCCTTCTTGTTCCCTGCAGTCGTCTCAGCTATCTTCTTTGTCCTAA 1320
Query 1394 ACGCTCTCATCTGGGGACAGAAGTCATCTGGGGCTGTCCCCTTTGGAACAATGTTCGC-C 1452
|||| |||||||||||||| || |||||||| ||||| ||||||||||||||||| || |
Sbjct 1321 ACGCACTCATCTGGGGACAAAAATCATCTGGAGCTGTTCCCTTTGGAACAATGTTTGCTC 1380
Query 1453 TTGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTGTTGGGG-GTTACATTGG 1511
| |||||||||||||||||| ||||| || ||||| ||||||||||| | || || | ||
Sbjct 1381 T-GATCTTCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCTTTGTTGGCGCGT-ACCTCGG 1438
Query 1512 GTTCAAGAAGCCAGCGGCT-GATGA-CCCAGTGAAAACCAACAAAATCCCGAGG-CAAAT 1568
|||||||||||| | || ||||| ||| |||||||||||||||||||| | | |||||
Sbjct 1439 ATTCAAGAAGCCACCA-CTTGATGATCCC-GTGAAAACCAACAAAATCCC-ACGTCAAAT 1495
Query 1569 CCCAGAGCAAGCTTGGTACATGAACCCGGTTTTCTCAATCCTCATTGGAGGAATCTTACC 1628
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1496 CCCAGAGCAAGCTTGGTACATGAACCCAGTTTTCTCAATCCTCATTGGAGGAATCTTACC 1555
Query 1629 GTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGCTCAACCAGTT 1688
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1556 ATTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCCATCTGGCTTAACCAGTT 1615
Query 1689 CTACTACATCTTTGGGTTCCTCTTCCTCGTCTTTGTAATCCTCATTGTGACTTGCGCCGA 1748
|||||||||||| || |||||||||||||||||||| ||||| || || || ||||| ||
Sbjct 1616 CTACTACATCTTCGGATTCCTCTTCCTCGTCTTTGTGATCCTTATGGTCACATGCGCTGA 1675
Query 1749 GATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGACTACCTTTGGTGGTGGAG 1808
||| ||| | || |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1676 GATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGAAGACTATCTCTGGTGGTGGAG 1735
Query 1809 ATCATACCTCACATCAGGCTCATCAGCTCTCTACCTCTTCCTCTATGCCA-CGTTCTACT 1867
|| |||||||| ||||| || || || |||| ||||||||||| || | | ||||| |
Sbjct 1736 GTCTTACCTCACCTCAGGTTCTTCTGCGGTCTATCTCTTCCTCTACGC-AGCCTTCTATT 1794
Query 1868 TCTTCACAAAGCTTCAGATCACCAAACTGGTCTCTGCGATGCTTTACTTTGGGTACATGC 1927
||||||||||||| |||||||| || || ||||| || ||||| ||||| || |||||||
Sbjct 1795 TCTTCACAAAGCTCCAGATCACTAAGCTCGTCTCGGCCATGCTCTACTTCGGATACATGC 1854
Query 1928 TCATCGCCTCCTACGCATTTTTTGTGCTCACAGGAACAATAGGGTTCTATGCTTGTCTCT 1987
| |||||||| ||||| ||||||||||| || |||||||| |||||||| ||||||||||
Sbjct 1855 TTATCGCCTCTTACGCGTTTTTTGTGCTGACCGGAACAATCGGGTTCTACGCTTGTCTCT 1914
Query 1988 GGTTCACAAGGCTCATCTATTCCTCTGTTAAGATCGATT 2026
||||||||||||||||||||||||| || ||||||||||
Sbjct 1915 GGTTCACAAGGCTCATCTATTCCTCGGTAAAGATCGATT 1953
> Ahg478776 jgi|Araly1|478776|fgenesh2_kg.3__1477__AT3G13772.1
Length=2098
Score = 630 bits (341), Expect = 1e-179
Identities = 1108/1467 (76%), Gaps = 98/1467 (7%)
Strand=Plus/Plus
Query 571 GGTTATCATGTTGGTCTT-AAAGGCCAG-TACGAGGGGAGCAAAGAGCAGAAGTTCTTTA 628
|||| || |||||| ||| ||||| || || || |||||||||||| |||| | |||||
Sbjct 469 GGTTTTCGTGTTGG-CTTCAAAGG-GAGTTATGAAGGGAGCAAAGAGGAGAAATACTTTA 526
Query 629 TGCACAATCACTTG-GCATTTAC-AGTC-CGCTATCACAGAGATATCCAA-A--CTGATG 682
| || ||||||||| || || | |||| | || ||||||| | |||| | |||||
Sbjct 527 TACATAATCACTTGAGC--TTCCGAGTCATG-TACCACAGAG--A-CCAAGAGTCTGATT 580
Query 683 CTGCAAGAATCGTGGGATTTGAGGTTAAACCTTACAGTGTGAAGCATGAGTATGAGGGAG 742
|||| |||| || ||||||||||||| ||| ||||| | |||||| || | ||||
Sbjct 581 CTGCTCGAATTGTTGGATTTGAGGTTACGCCTAACAGTATCTTGCATGAATA-CAAGGAG 639
Query 743 AGTGGAGTG-AGAAGA-CC-C-GTCTGACGACTTGTGATCCTCACACGAAACGCCTGGTC 798
| ||| || | || | || | || | || || ||| || |||| ||| ||| ||
Sbjct 640 TG-GGA-TGAAAAAAATCCTCAGT-TAACAACATGTAATAAGGACACAAAAAATCTGATC 696
Query 799 GTTA-GC-TCGGCTACCCCTCAAGAAGTTGAACAAAAG-AAGGAGATTA-TCTTCACATA 854
| || | || ||||||||||||||| | || | || || | || | || |||||
Sbjct 697 -CAAGGCAAC-ACTGTCCCTCAAGAAGTTGAGC-AAGGAAAAGA-AATAGTGTTTACATA 752
Query 855 TGACGTCGATTTCCAGGAAAGTGAAGTGAAGTGGGCATCTAGATGGGATACTTATC-TTC 913
||| | | | | | ||||||||| | || ||||| ||| | ||||| || || | |||
Sbjct 753 TGA--T-G-TCT-C--GAAAGTGAAATCAAATGGGCTTCTCGGTGGGACACGTACCTTTC 805
Query 914 TGATGAGTGATAACCAAATCCACTGGTTCTCTATCGTCAATTCTCTGATGATCGTCCTAT 973
| |||| ||| | |||||||||||||| || ||| | ||||| || ||||| ||||| |
Sbjct 806 TCATGAACGATGATCAAATCCACTGGTTTTCCATCATAAATTCACTTATGATTGTCCTTT 865
Query 974 TCCTATCTGGTATGGTGGCAATGATAATGCTGAGGACCCTTTAC-CGTGACATTTCACGA 1032
|||| ||||| ||||| || ||||| ||| |||| || || ||| | || || ||| |
Sbjct 866 TCCTTTCTGGAATGGTAGCCATGATCATGATGAGAACTCTATACAAG-GATATCTCA-AA 923
Query 1033 -TACAA-CGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAGACAGGATGGAAGCTTGTCC 1090
||||| | |||| ||||| ||||| || || || |||||||| |||||||||||||| |
Sbjct 924 CTACAATC-AGCTTGAGACCCAAGATGAGGCCCAGGAAGAGACTGGATGGAAGCTTGTAC 982
Query 1091 ATGGTGATGTTTTCAGACTTCCTACCAATTCT-GATCTGCTCTGCGTCTATGTTGGAACA 1149
| || ||||| ||||| | || || ||| ||| | | || || |||||||| |||
Sbjct 983 ACGGAGATGTCTTCAGGCCACCGGTGAACTCTGGAT-TATTGTGTGTTTATGTTGGTACA 1041
Query 1150 GGGGTCCAGTGTC-TAGGCATGGT-ATTTGTCACAATGATCTTCGCCATGCTCGGATTTC 1207
|| || ||| || | || || || | | || |||||||| || || |||| || |||
Sbjct 1042 GGTGTTCAG-ATCTTCGGGAT-GTCACTGGTTACAATGATGTTTGCGTTGCTTGG-CTTC 1098
Query 1208 -TCTCCCCTTCCAATC-GGGGTGGTCTGATGACTGCAAT-G--CTCTTGCTCTGGGTCTT 1262
| || || ||||| | | || || || |||||||| || | |||||| ||||| ||
Sbjct 1099 TTATCTCCATCCAA-CAGAGGAGGGCTTATGACTGCCATGGTTCTCTTG---TGGGTTTT 1154
Query 1263 CATGGGACTCTTTGCTGGTTACGCCTCTTCACGTC-TCTACAAAATGTTCAAAGG-AACA 1320
||||||| | || ||||||||| |||| || || | || |||||||||||||||| ||||
Sbjct 1155 CATGGGAATATTCGCTGGTTACTCCTCGTCTCGCCTTC-ACAAAATGTTCAAAGGAAACA 1213
Query 1321 GAGTGGAAGAGAATCG--CTTTCAGAACAGCCTTCTTGTTTCCTGCAGT-T-GTGTCAGC 1376
||||||||||||| | ||| || || || ||| ||||||| | || | | | ||
Sbjct 1214 -AGTGGAAGAGAAT-GACCTTGAAG-ACTGCATTCATGTTTCC-G-GGTATCCTTTTTGC 1268
Query 1377 AATCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAGAAGTCATCTGGGGCTGTCCCCTT 1436
||||||||||| || || || || || |||||| || |||||||||| || | || ||
Sbjct 1269 TATCTTCTTTGTTCTGAATGCCCTTATTTGGGGAGAGCAGTCATCTGGAGCCATACCATT 1328
Query 1437 TGGAACAATGTTCGCCT-TGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTG 1495
||| |||||||| | || | ||| ||||||||||||||||||||| || || ||||| |
Sbjct 1329 TGGTACAATGTTTG-CTCTCTTCTGCCTCTGGTTTGGCATCTCAGTCCCACTAGTCTTCG 1387
Query 1496 TTGGGGGTTACAT-TGGGTT-CAAGAAGCCAGCGGCTGATGACCCAGTGAAAACCAACAA 1553
|||| | | || |||||| |||||||||||| ||| || ||||| ||||| |||||
Sbjct 1388 TTGGTAGCT--ATCTGGGTTACAAGAAGCCAGCAATTGAAGATCCAGTCAAAACAAACAA 1445
Query 1554 AATCCCGAGGCAAATCCCAGAGCAAG-CTTGGTACATGAACCCGGTTTTCTCAATCCTCA 1612
|||||||| ||| | ||||||| || | ||||||||||| || |||||||| || || |
Sbjct 1446 GATCCCGAGACAAGTACCAGAGC-AGCCGTGGTACATGAAACCAGTTTTCTCCATACTAA 1504
Query 1613 TTGGAGGAATCTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCA 1672
||||||| ||| | |||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1505 TTGGAGGCATCCTCCCGTTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCCTGACATCAA 1564
Query 1673 TCTGGCTCAACCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTT-TGTAATCCTC 1731
| ||||| |||||||||||||||||||| |||||||| || | || || | | ||| |
Sbjct 1565 TATGGCTGAACCAGTTCTACTACATCTTCGGGTTCCTTTTTATAGTGTTCT-TGATCTTG 1623
Query 1732 ATTGTGACTTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGAC 1791
|| || || || || ||||| || || || ||||| || ||||||||||| || || |||
Sbjct 1624 ATCGTCACCTGTGCAGAGATTACAGTGGTGCTCTGTTATTTCCAGCTTTGTAGCGAAGAC 1683
Query 1792 TACCTTTGGTGGTGGAGATCATACCTCACAT-CAGGCTCATCAGCTCTCTACCTCTTCCT 1850
||| |||||||||||| | ||| | || | | |||||||| ||| |||||||||||||
Sbjct 1684 TACAACTGGTGGTGGAGAGCTTACTTAAC-TGCGGGCTCATCCGCTTTCTACCTCTTCCT 1742
Query 1851 CTA-TGCCA-CGTTCTACTTCTTCACAAAGCTTC-AGATCACCAAA-CTGGTCTCTGCGA 1906
||| | | | | |||||||||||||||||| || ||||||| ||| || || || | ||
Sbjct 1743 CTACT-CAATC-TTCTACTTCTTCACAAAG-TTGGAGATCAC-AAAGCTAGTATCGG-GA 1797
Query 1907 -TGCTTTACTTTGGGTACATGCTCATCGCCTCCTACGCATTTTTTGTGCTCACAGGAACA 1965
|||| ||||| ||||||||| ||||| ||| |||||||| || || || || || ||
Sbjct 1798 ATGCTCTACTTCGGGTACATGATCATCATCTCTTACGCATTCTTCGTCCTAACTGGCACT 1857
Query 1966 ATAGGGTTCTATGCTTGTCT-CTGGTT 1991
|| || ||||||||||| || ||||||
Sbjct 1858 ATCGGTTTCTATGCTTG-CTTCTGGTT 1883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84712704880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5