BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10870.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893001 jgi|Araly1|893001|Al_scaffold_0006_997 1192 0.0
> Ahg893001 jgi|Araly1|893001|Al_scaffold_0006_997
Length=798
Score = 1192 bits (645), Expect = 0.0
Identities = 748/799 (94%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 99 ATGGCAAGAGTCTTCGAATCGGATTCGGGTTCTGGTTGTTCCAATGTACTGAGTCTTGAC 158
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCAAGAGTCGTCGAATCGGATTCGAGTTCGGGTTGTTCCAATGTACTGAGTCTTGAC 60
Query 159 TTAATCAGAGAATCGTTGATTAGGCAAGAAGACACCATCGTCTTCAGCTTGATCGAGAGA 218
| || ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCGATTAGAGAATCGTTGAATAGACAAGAAGACACCATCGTCTTCAGCTTGATAGAGAGA 120
Query 219 GCTAAGTTTCCACTCAATTCTCCTGCTTTCGAGGAATCTCGTTGTCTAGATTCTGGAAGT 278
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
Sbjct 121 GCTAAGTTTCCACTCAATTCCCCTGCATTCGAAGAATCTCGTTGTCTAGATTCTGGAAAT 180
Query 279 TTCTCTTCTCTCACTGAGT-TTTTCGTCAGAGAGACAGAAATCATCCAAGCTAAGGTAGG 337
| ||||||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||
Sbjct 181 TCCTCTTCTCTCACTGAGTATTTT-GTCAGAGAGATAGAAACCATCCAAGCTAAGGTAGG 239
Query 338 AAGATATGAATACCCGGAAGAGAATCCTTTCTTCCTTGAGAACATTCCTCACTCGGTTTT 397
|||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct 240 AAGATATGAAAACCCGGAAGAGAATCCTTTCTTCCTAAAGAACATTCCTCACGCGGTATT 299
Query 398 TCCTACGCACAAATATCCATCGGCTTTGCACCCTAAGGCTCTATCTGTTAACATTAACAA 457
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 300 TCCTACGCACAAATATCCACCGGCTTTGCACCCTAAGGCTCTATCCGTTAACATAAACAA 359
Query 458 ACAAATCTGGGATATTTACTTTAAAGAATTGCTTCCTTTGTTTGTCAAACCTGGCGATGA 517
||| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 ACATATTTGGGATGTTTACTTTAAAGAATTGCTTCCTTTGTTCGTCAAACCTGGCGATGA 419
Query 518 TGGCAACTATCCATCAACTGCTGCTAGTGATCTCGCCTGTTTACAAGCTCTTTCGAGAAG 577
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 420 TGGCAACTATCCATCAACTGCTGCTAGTGATCTTGCGTGTTTACAAGCTCTTTCAAGAAG 479
Query 578 GATTCACTACGGTAAATTTGTAGCTGAGGTCAAATTCAGAGATGCTCCACAAGATTACGA 637
||||||||||||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 480 GATTCACTACGGTAAATTTGTTGCCGAAGTCAAATTCAGAGATGCTCCTCAAGATTACGA 539
Query 638 GCCTGCGATTCGCGCTCAGGATAGAGAGGCTTTGATGAAGCTGTTGACGTTTGAGAAAGT 697
|| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GCGTGCGATTCGAGCTCAGGATAGAGAGGCTTTGATGAAGCTTTTGACGTTTGAGAAAGT 599
Query 698 AGAAGAAATGGTTAAGAAGAGAGTGCAGAAGAAAGCAGAAACGTTTGGACAAGAAGTAAA 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGAAGAAATGGTTAAGAAGAGAGTGCAGAAGAAAGCAGAAACGTTTGGACAAGAAGTAAA 659
Query 758 ATTCAACTCTGGCTATGGCGATGAGAGTAAGAAGAAGTATAAAGTGGATCCATTGCTTGC 817
|| || | ||| || ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 ATGCATCACTGACTCTGGTGATGAGAGTAAGAAGAAGTATAAAGTGGATCCATTACTTGT 719
Query 818 CTCTCGCATCTACGGGGAATGGCTTATCCCTCTCACTAAGCTCGTTGAGGTTGAGTATCT 877
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 CTCTCGCATCTATGGAGAATGGCTTATCCCTCTCACTAAGCTCGTTGAGGTTGAATATCT 779
Query 878 TCTACGTCGTCTCGATTGA 896
|||||||||||||||||||
Sbjct 780 TCTACGTCGTCTCGATTGA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5