BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10890.1
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893002 jgi|Araly1|893002|Al_scaffold_0006_998 1219 0.0
> Ahg893002 jgi|Araly1|893002|Al_scaffold_0006_998
Length=912
Score = 1219 bits (660), Expect = 0.0
Identities = 837/917 (91%), Gaps = 34/917 (4%)
Strand=Plus/Plus
Query 1 ATGGCGGAACCAAGGGT--GAGA-GACTCTGACACGGTGAGGATCAGAACTTCCTCGGAG 57
||||| ||| ||||||| |||| |||| |||| |||||||||||||||||||||| |
Sbjct 1 ATGGCAGAAGCAAGGGTGAGAGACGACTGTGACGCGGTGAGGATCAGAACTTCCTC---G 57
Query 58 GATGATCATCATAGAGTTGGCCAATTTTCAGATTCGCCGCCACCAACGATCCCTTCCGAA 117
|||| ||||||| | |||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 58 GATGGTCATCATGGTGTTGGCCAATTTTCCGATTCGCCGCCACCTACGATCCATTCCGAA 117
Query 118 TTGCAAAGAAGGGAATTTTTGTTCAGCATTGGCA-TGAGTTGTTATTTGATACATTTGAT 176
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 118 TTGCAAAGAAGGGAATTTTTGTTCAGCATTGG-ATTGAGTTGTTATTTGATACATTTGCT 176
Query 177 TGCTACTGGTAGACAAGAGATTCACAAGATCGTTGAGCTACGTAACGATTTAGACAAGTT 236
||||||||||||| |||||||||||||||| |||||| ||||| |||||||||| | |||
Sbjct 177 TGCTACTGGTAGAGAAGAGATTCACAAGATTGTTGAGTTACGTTACGATTTAGAGAGGTT 236
Query 237 TTTGGAATGTCGAAACGAAGAACTGAGGCAAAAACAGCAAGAGTTTGTCGAGTTACGTAA 296
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 237 TTTGGAATGTCGAAACGAAGAACTAAGGCGAAAACAGCAAGAGTTTGTCGAGTTACGGAA 296
Query 297 CGATATACACAAGTTTTTAGAGTTTCACAACAATGAATTGAGGCG-AAA-A-C---A--- 347
||||||| | ||||||||||| ||||||||| ||||||||||||| ||| | | |
Sbjct 297 CGATATAGAGAAGTTTTTAGAATTTCACAACGATGAATTGAGGCGAAAACAGCAAGAGTT 356
Query 348 --GC--T----AG--AG-A-AAACTGAAACCTCTGCGTATTCCGCCACAAGTGATGTTGT 395
|| | || || | |||||||||||||||| |||||||||||||||||||||||
Sbjct 357 TCGCTTTCGGAAGCAAGAACAAACTGAAACCTCTGCATATTCCGCCACAAGTGATGTTGT 416
Query 396 TGATGGCCCTGAATCGTCTACTGATCACTATTACTCTCCACAGATCATACAGACATCTAT 455
||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 417 AGATGGCCCTGACTCTTCTACTGATCACTATTACTCTCCTCAGATCATGGAGACATCTAT 476
Query 456 GAGTGTTGGAGGTGAAGGGTCGTTGTCACATTACGTATATAAGCTAGAGAATGATTCTGG 515
||||||||||||||||||||| ||||||||||| |||||||||| || | ||||||||||
Sbjct 477 GAGTGTTGGAGGTGAAGGGTCTTTGTCACATTATGTATATAAGCGAGGGGATGATTCTGG 536
Query 516 AGGTGAGATGGATCAGCTTGAAGCTGAACTTGAAGCTGAGTTTGAGCTTCTTCAGATTGG 575
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATGTGAAATGGATCAGCTTGAAGCTGAACTTGAAGCTGAGTTTGAGCTTCTTCAGATTGG 596
Query 576 TCATA-ACCAGGAGG-TT--AGTGAAGATGCAGAAGGATTAAGATTGGGACATGTGTGTC 631
||| | |||| |||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 597 TCA-AGACCATGAGGTTTCAAGTGAAGATGCAGAAGGATTAAGATTGGGACACGTGTGTC 655
Query 632 CAGGACTAGTGGAGGAACAACAAGGAGTGTGTCCGTATGAGCTGGAGAGAAGACTATACG 691
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 656 CAGGACTAGTGGAGGAACAACAAGGAGTGTGTCCGTATGAGCTGGAGAGAAGACTACACG 715
Query 692 AGCTCATGGAGACAAGACAACAAGAGGAGATAAAGGAGTTAGAGATTGCATTGGATGATG 751
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGCTTATGGAGACAAGACAACAAGAGGAGATAAAGGAGTTAGAGATTGCATTGGATGATG 775
Query 752 CTAAACAAAGACTTCATTTGAAAGAGACAGAAGCTTCTTGGTGGAAAGACACTGCTTATA 811
|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 776 CTAAACAAAGGCTTCATTTGAAGGAGAGAGAAGCTTCTTGGTGGAAAGACACTGCTTATA 835
Query 812 TAGTCTCTGAACGTATTCCAGAACCTTCTAGAATCACTCACAGCTCTCGAACTCATCCTT 871
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 836 TAGTCTCTGAACGTATTCCAGAACCTTCTAGAATCACTTACAGCTCTCGAACTCATCCTT 895
Query 872 ACCCTCTCTCAAGGTGA 888
|||||||||||||||||
Sbjct 896 ACCCTCTCTCAAGGTGA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32900077371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5