BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10900.1 Length=2258 Score E Sequences producing significant alignments: (Bits) Value Ahg893003 jgi|Araly1|893003|Al_scaffold_0006_999 2839 0.0 > Ahg893003 jgi|Araly1|893003|Al_scaffold_0006_999 Length=1812 Score = 2839 bits (1537), Expect = 0.0 Identities = 1726/1816 (95%), Gaps = 17/1816 (1%) Strand=Plus/Plus Query 77 ATGCCGCCTCCAGAAATTTCGAAAAGGGTTTTAGACTCGAAGCTTGAAGCTTGCAAATTC 136 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGCCGCCTCCAGAAATTTCGAAAAGGGTTTTAGACGCGAAGCTTGAAGCTTGCAAATTC 60 Query 137 GCATTCTTGAAGCTAAGTGCGGTTAAAACGACGAGAATGAAGAACTATAAGCAACTGCGT 196 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 GCATTCTTAAAGCTAAGTGCGGTCAAAACGACGAGAATGAAGAACTATAAGCAACTGCGT 120 Query 197 ACTCTGCTTATGTTGAAAGAAATATCTCGACGTGGTGCTGATCGAGACTTTCTTAAAGAT 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACTCTGCTTATGTTGAAAGAAATATCTCGACGTGGTGCTGATCGAGACTTTCTTAAAGAT 180 Query 257 CCGGAGAATAGTGTAACTCGAATACTGTGTTCGGTTCTAAAGCAAGTGGTGAGTAACTCA 316 ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 181 CCGGAAAATAGTGTAACTCGAATTCTGTGTTCGGTTTTAAAGCAAGTGGTGAGTAACTCA 240 Query 317 GACCGTTCTTTAAAGTCTCTTCGTGGGTTTCAATATGAGACATTGGATGATCAAGAGAAG 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GACCGTTCTTTAAAGTCTCTTCGTGGGTTTCAATATGAGACATTGGATGATCAAGAGAAG 300 Query 377 CAACAAGTGACCAGGATGATAGCAAGCGTACAAGGAATGGGTAGTAGAAAATACGAACCA 436 ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 CAACAGGTGACGAGGATGATAGCAAGTGTACAAGGAATGGGTAGTAGAAAATACGAACCA 360 Query 437 GAAACTGTTGATCATCTAGAGGACATGACTGAGCCAATCGAAATGGAGATTTATTTGGGA 496 |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 361 GAAAGTGTTGATCATCTAGAGGACATGACTGAGCCAGTGGAAATGGAGATTTATTTGGGA 420 Query 497 AAC-G-GA-GA-----T-GGTGGGGATTTTGGTGACATTGTTTTGGAGCCAATCTCTTGG 547 ||| | || || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AACGGAGATGATTCTGTGGGTGGGGATTTTGGTGACATTGTTTTGGAGCCAATCTCTTGG 480 Query 548 CCTTTAGAGTCACAGCTAACTCTTGAATGGGTTGAGACTTTGATGGGTTTGCTAAACCAG 607 ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 481 CCTTTAGAGTCGCAGCTAAATCTTGAATGGGTTGAGACTTTGATGGGTTTGATAAACCAG 540 Query 608 TCCACATGGAAGAACTCGGTTTCCGAGTTCTCGTTGATATTGCCACATTCTGTGGCTGTT 667 | |||||||||||||| ||||||||||||| | |||||||||||||||||||||||| || Sbjct 541 TTCACATGGAAGAACTTGGTTTCCGAGTTCCCTTTGATATTGCCACATTCTGTGGCT-TT 599 Query 668 T-CTCTGGTGGATTGTGCTTCGCAGATTCTAGAAAAAGAAGCCAATTGTGTTAAAATCAA 726 | |||||||||| |||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 600 TGCTCTGGTGGAATGTGCTTCGCAGATTCTAGACAAAGAAGCCAATTGCGTTAAAATTGA 659 Query 727 TGGCTGTAGTGAGGATTCTAGAGTGATTGTGGTTGGAGATCTCCACGGTCAGTTACACGA 786 | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 660 TTGCTGTAGTGAGAATTCTAGAGTGATTGTGGTTGGGGATCTCCACGGTCAGTTACATGA 719 Query 787 TCTCCTCAAAATCTTTGATCAATCAGGAAGGCCTTCACAGAATCAATGCTTTGTATTCAA 846 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 720 TCTCCTCAAAATCTTTGATCAATCAGGAAGGCCTTCACAGAATCAATGTTTTGTGTTCAA 779 Query 847 CGGTAATTACATTGGTCGAGGTTCTTGGAGCCTAGAAGTGTTCCTGGTTCTCTTAGCTTG 906 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 780 TGGTAATTACATTGGTCGAGGTTCTTGGAGCCTAGAAGTGTTCTTGGTTCTCTTAGCCTG 839 Query 907 GAAGATTATGATGCCTGAGAATGTAATTTTACTTCGAGGAAGCTCTGAAACAAGAGTTTC 966 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 840 GAAGATTCTGATGCCTGAGAATGTAATTTTACTTCGAGGAAGCTCTGAAACAAGAATTTC 899 Query 967 TGCAGAAGAGCTTGATTTCCTGAAAGATATATGTGATAGATACGGTGAGCACGGTCCAAT 1026 ||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| Sbjct 900 TGCAGAAGAGCTTGATTTCTTGAAAGAAATATGTGACAGATATGGTGAGCACGGTCCAAT 959 Query 1027 GTTATACTCCAAGTGTATCGATTGTTTTAAAATG-TTACCTTTGGCATCAGTCATATCAA 1085 | |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 960 GCTATACTCCAAGTGTATCGATTGTTTTAAAATGCTT-CCTTTGGCATCGGTCATATCAA 1018 Query 1086 ATAGCGTCTACACAACTCATGGAGGTCTCTTTCAAAGTTGTG-GGGTCCACGAAGAGAGC 1144 ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||| Sbjct 1019 ATAGCGTCTACACAACTCATGGAGGTCTCTTTCAAAGTT-CGCGGGTCCAAGAAGATAGC 1077 Query 1145 CCGAATCCATCTTTGTTGTTAGGTTCTTTAGAGGAACTTGACAAGATTGAGAGGAGACAA 1204 |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1078 GTGAATCCATCTTTGTGGTTGGGTTCTTTAGACGAACTTGACAAGATTGAGAGGAGACAA 1137 Query 1205 GCTGGTGAGAACGATGACGAGAATATAACTCTTAACCATGTTTTATGGTCATGTCCATGG 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 GCTGGTGAGAACGATGACGAGAATATAACTCTTAACCATGTTTTATGGTCATGTCCATGG 1197 Query 1265 ATGGCTGATGGTCTGAGCGAAAGCAATTACAAGGGACTTCTTTGGGGAGCCGATTGCACC 1324 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1198 ATGGCTGATGGTCTGAGCGAAAGCAATTACAAGGGCCTTCTTTGGGGAGCTGATTGCACC 1257 Query 1325 GAGACTTTTCTACAACAATCAAACTTAAAGATGATTATTAGATCGCATGAAGGCCCCGAT 1384 ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1258 GAGACTTTTCTACAACAGTCAAACTTAAAGATGATTATAAGATCACATGAAGGCCCCGAT 1317 Query 1385 GCACGAGCAGATCGAGAAGACATGGGAAACATGCTAAGCGGTTACTCAATAGATCATGAA 1444 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1318 GCACGAGCAGATCGAGAAGATATGGGAAACATGCTAAGCGGTTACTCGATAGATCATGAA 1377 Query 1445 GTAGAATCTGGAAAGCTTTGCACAGTCTTCAGTGCTTCAATGTTCTCACAGGGTTCAAGA 1504 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1378 GTAGAATCTGGAAAACTTTGCACAGTCTTCAGCGCTTCAATGTTCTCACAGGGTTCAAGA 1437 Query 1505 AACTATGAAAATGAAGGCGCATATGCGGTTCTTGAGCCTCCCAACTTCACAGAGCC-CGT 1563 ||||||||||| |||||||||||||| ||||||||||||| |||||||||||| || | Sbjct 1438 AACTATGAAAACGAAGGCGCATATGCTGTTCTTGAGCCTCACAACTTCACAGAACCTAG- 1496 Query 1564 ATTTGTTTCTTACACAGTCGAAAATGTCCCAAGGTTACAACATCAAATCATAAGTGATGG 1623 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1497 ATTTGTTTCTTACACAGTCGAAAATGTTCCAAGGTTACACCATCAAATCATAAGTGATGG 1556 Query 1624 ATCTTCAACTCAACAACAGCAAATGTGGGAAAATAGAACAGGACACGGTTTTGCATCAAT 1683 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | Sbjct 1557 ATCTTCAACTCAACAACAACAAATGTGGGAGAATAGAACAGGACACGGTTTTGCATCATT 1616 Query 1684 GGGGATTTCTAATCCGCCTTCATGGACCGTTCCTTTGCCAAATGACCCGAGTCAGATCCT 1743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 GGGGATTTCTAATCCGCCTTCATGGACCGTTCCTTTGCCAAATGACCCGAGTCAGATCCT 1676 Query 1744 TCAACTTCGAGAGCCTCCTCAAGTCTTTGAAGGTCTTCCTCTTCCCGACAACATCCAGGA 1803 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1677 TCAACTTCGAGAGCCTCCTCAAGTCTTTGAAGGTCTTCCTCTTCCCGACACCATCCAGGA 1736 Query 1804 GCCTCACAAATCCAACTACGACTACTTGTTTAGACTCATAAGCGCTCTAAAACAGGAGAT 1863 ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| Sbjct 1737 GCCTCACAAATCCAACTACAACTACTTGTTTAGACTGATAAGCGCTCTCAAACAGGAGAT 1796 Query 1864 TCAAACAAGGGTATAA 1879 |||||| ||||||||| Sbjct 1797 TCAAACCAGGGTATAA 1812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85017426840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5