BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10900.1
Length=2258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893003 jgi|Araly1|893003|Al_scaffold_0006_999 2839 0.0
> Ahg893003 jgi|Araly1|893003|Al_scaffold_0006_999
Length=1812
Score = 2839 bits (1537), Expect = 0.0
Identities = 1726/1816 (95%), Gaps = 17/1816 (1%)
Strand=Plus/Plus
Query 77 ATGCCGCCTCCAGAAATTTCGAAAAGGGTTTTAGACTCGAAGCTTGAAGCTTGCAAATTC 136
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGCCGCCTCCAGAAATTTCGAAAAGGGTTTTAGACGCGAAGCTTGAAGCTTGCAAATTC 60
Query 137 GCATTCTTGAAGCTAAGTGCGGTTAAAACGACGAGAATGAAGAACTATAAGCAACTGCGT 196
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATTCTTAAAGCTAAGTGCGGTCAAAACGACGAGAATGAAGAACTATAAGCAACTGCGT 120
Query 197 ACTCTGCTTATGTTGAAAGAAATATCTCGACGTGGTGCTGATCGAGACTTTCTTAAAGAT 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTCTGCTTATGTTGAAAGAAATATCTCGACGTGGTGCTGATCGAGACTTTCTTAAAGAT 180
Query 257 CCGGAGAATAGTGTAACTCGAATACTGTGTTCGGTTCTAAAGCAAGTGGTGAGTAACTCA 316
||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 181 CCGGAAAATAGTGTAACTCGAATTCTGTGTTCGGTTTTAAAGCAAGTGGTGAGTAACTCA 240
Query 317 GACCGTTCTTTAAAGTCTCTTCGTGGGTTTCAATATGAGACATTGGATGATCAAGAGAAG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACCGTTCTTTAAAGTCTCTTCGTGGGTTTCAATATGAGACATTGGATGATCAAGAGAAG 300
Query 377 CAACAAGTGACCAGGATGATAGCAAGCGTACAAGGAATGGGTAGTAGAAAATACGAACCA 436
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CAACAGGTGACGAGGATGATAGCAAGTGTACAAGGAATGGGTAGTAGAAAATACGAACCA 360
Query 437 GAAACTGTTGATCATCTAGAGGACATGACTGAGCCAATCGAAATGGAGATTTATTTGGGA 496
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 361 GAAAGTGTTGATCATCTAGAGGACATGACTGAGCCAGTGGAAATGGAGATTTATTTGGGA 420
Query 497 AAC-G-GA-GA-----T-GGTGGGGATTTTGGTGACATTGTTTTGGAGCCAATCTCTTGG 547
||| | || || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACGGAGATGATTCTGTGGGTGGGGATTTTGGTGACATTGTTTTGGAGCCAATCTCTTGG 480
Query 548 CCTTTAGAGTCACAGCTAACTCTTGAATGGGTTGAGACTTTGATGGGTTTGCTAAACCAG 607
||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 CCTTTAGAGTCGCAGCTAAATCTTGAATGGGTTGAGACTTTGATGGGTTTGATAAACCAG 540
Query 608 TCCACATGGAAGAACTCGGTTTCCGAGTTCTCGTTGATATTGCCACATTCTGTGGCTGTT 667
| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 541 TTCACATGGAAGAACTTGGTTTCCGAGTTCCCTTTGATATTGCCACATTCTGTGGCT-TT 599
Query 668 T-CTCTGGTGGATTGTGCTTCGCAGATTCTAGAAAAAGAAGCCAATTGTGTTAAAATCAA 726
| |||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 600 TGCTCTGGTGGAATGTGCTTCGCAGATTCTAGACAAAGAAGCCAATTGCGTTAAAATTGA 659
Query 727 TGGCTGTAGTGAGGATTCTAGAGTGATTGTGGTTGGAGATCTCCACGGTCAGTTACACGA 786
| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 660 TTGCTGTAGTGAGAATTCTAGAGTGATTGTGGTTGGGGATCTCCACGGTCAGTTACATGA 719
Query 787 TCTCCTCAAAATCTTTGATCAATCAGGAAGGCCTTCACAGAATCAATGCTTTGTATTCAA 846
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 720 TCTCCTCAAAATCTTTGATCAATCAGGAAGGCCTTCACAGAATCAATGTTTTGTGTTCAA 779
Query 847 CGGTAATTACATTGGTCGAGGTTCTTGGAGCCTAGAAGTGTTCCTGGTTCTCTTAGCTTG 906
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 780 TGGTAATTACATTGGTCGAGGTTCTTGGAGCCTAGAAGTGTTCTTGGTTCTCTTAGCCTG 839
Query 907 GAAGATTATGATGCCTGAGAATGTAATTTTACTTCGAGGAAGCTCTGAAACAAGAGTTTC 966
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 GAAGATTCTGATGCCTGAGAATGTAATTTTACTTCGAGGAAGCTCTGAAACAAGAATTTC 899
Query 967 TGCAGAAGAGCTTGATTTCCTGAAAGATATATGTGATAGATACGGTGAGCACGGTCCAAT 1026
||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||
Sbjct 900 TGCAGAAGAGCTTGATTTCTTGAAAGAAATATGTGACAGATATGGTGAGCACGGTCCAAT 959
Query 1027 GTTATACTCCAAGTGTATCGATTGTTTTAAAATG-TTACCTTTGGCATCAGTCATATCAA 1085
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 960 GCTATACTCCAAGTGTATCGATTGTTTTAAAATGCTT-CCTTTGGCATCGGTCATATCAA 1018
Query 1086 ATAGCGTCTACACAACTCATGGAGGTCTCTTTCAAAGTTGTG-GGGTCCACGAAGAGAGC 1144
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||
Sbjct 1019 ATAGCGTCTACACAACTCATGGAGGTCTCTTTCAAAGTT-CGCGGGTCCAAGAAGATAGC 1077
Query 1145 CCGAATCCATCTTTGTTGTTAGGTTCTTTAGAGGAACTTGACAAGATTGAGAGGAGACAA 1204
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 GTGAATCCATCTTTGTGGTTGGGTTCTTTAGACGAACTTGACAAGATTGAGAGGAGACAA 1137
Query 1205 GCTGGTGAGAACGATGACGAGAATATAACTCTTAACCATGTTTTATGGTCATGTCCATGG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCTGGTGAGAACGATGACGAGAATATAACTCTTAACCATGTTTTATGGTCATGTCCATGG 1197
Query 1265 ATGGCTGATGGTCTGAGCGAAAGCAATTACAAGGGACTTCTTTGGGGAGCCGATTGCACC 1324
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1198 ATGGCTGATGGTCTGAGCGAAAGCAATTACAAGGGCCTTCTTTGGGGAGCTGATTGCACC 1257
Query 1325 GAGACTTTTCTACAACAATCAAACTTAAAGATGATTATTAGATCGCATGAAGGCCCCGAT 1384
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1258 GAGACTTTTCTACAACAGTCAAACTTAAAGATGATTATAAGATCACATGAAGGCCCCGAT 1317
Query 1385 GCACGAGCAGATCGAGAAGACATGGGAAACATGCTAAGCGGTTACTCAATAGATCATGAA 1444
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 GCACGAGCAGATCGAGAAGATATGGGAAACATGCTAAGCGGTTACTCGATAGATCATGAA 1377
Query 1445 GTAGAATCTGGAAAGCTTTGCACAGTCTTCAGTGCTTCAATGTTCTCACAGGGTTCAAGA 1504
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1378 GTAGAATCTGGAAAACTTTGCACAGTCTTCAGCGCTTCAATGTTCTCACAGGGTTCAAGA 1437
Query 1505 AACTATGAAAATGAAGGCGCATATGCGGTTCTTGAGCCTCCCAACTTCACAGAGCC-CGT 1563
||||||||||| |||||||||||||| ||||||||||||| |||||||||||| || |
Sbjct 1438 AACTATGAAAACGAAGGCGCATATGCTGTTCTTGAGCCTCACAACTTCACAGAACCTAG- 1496
Query 1564 ATTTGTTTCTTACACAGTCGAAAATGTCCCAAGGTTACAACATCAAATCATAAGTGATGG 1623
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1497 ATTTGTTTCTTACACAGTCGAAAATGTTCCAAGGTTACACCATCAAATCATAAGTGATGG 1556
Query 1624 ATCTTCAACTCAACAACAGCAAATGTGGGAAAATAGAACAGGACACGGTTTTGCATCAAT 1683
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1557 ATCTTCAACTCAACAACAACAAATGTGGGAGAATAGAACAGGACACGGTTTTGCATCATT 1616
Query 1684 GGGGATTTCTAATCCGCCTTCATGGACCGTTCCTTTGCCAAATGACCCGAGTCAGATCCT 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GGGGATTTCTAATCCGCCTTCATGGACCGTTCCTTTGCCAAATGACCCGAGTCAGATCCT 1676
Query 1744 TCAACTTCGAGAGCCTCCTCAAGTCTTTGAAGGTCTTCCTCTTCCCGACAACATCCAGGA 1803
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1677 TCAACTTCGAGAGCCTCCTCAAGTCTTTGAAGGTCTTCCTCTTCCCGACACCATCCAGGA 1736
Query 1804 GCCTCACAAATCCAACTACGACTACTTGTTTAGACTCATAAGCGCTCTAAAACAGGAGAT 1863
||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 1737 GCCTCACAAATCCAACTACAACTACTTGTTTAGACTGATAAGCGCTCTCAAACAGGAGAT 1796
Query 1864 TCAAACAAGGGTATAA 1879
|||||| |||||||||
Sbjct 1797 TCAAACCAGGGTATAA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85017426840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5