BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10910.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940561 jgi|Araly1|940561|scaffold_601105.1 2185 0.0
> Ahg940561 jgi|Araly1|940561|scaffold_601105.1
Length=1346
Score = 2185 bits (1183), Expect = 0.0
Identities = 1293/1347 (96%), Gaps = 4/1347 (0%)
Strand=Plus/Plus
Query 14 GCATGAGAAGAAGAAGCTTTTAATGGCGGGAGTGATTAGGGCTAAGCAGCTGTTTCTATG 73
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCATGAGAAGAAGAAGC-TTAAATGGCGGGAGTGATTAGGGCTAAGCAGCTGTTTCTATG 59
Query 74 CTCGTCGATTCTCTCGAGCAACAACAATAAGGTTCTATCACGCCTTCCTCGGCGTAGTAT 133
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 60 CTCGTCGATTCTCTCGAGCAACAACAATAAGGTTTTATTACGCATTCCTCGGCGTAGTAT 119
Query 134 CAATGTAATTGCGGGAAATCTCAATTCGAGCGAGACTaagaagaaggagaaagagaagag 193
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 CAATGTAATTGCCGGAAATCTCAATTCGAGCGAGACGAAGAAGAAGGAGAAAGAGAAGAG 179
Query 194 gaagaggaggaaagagattgaggtggaaaaagCTACTGCGGAAGCAGTGGTCAATAAGGA 253
|||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 180 GAAGAGGAGGAAAGAGATTGAGGTGGCAAAAGCTACAGCGGAAGCAGTGGTGAATAAGGA 239
Query 254 AAAGAGAAGGACACGGTCGAGCAGAGGGTATGAACTCGCCGACGGTGACGAAGTTCCGTC 313
||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 240 AAAGAGAAGAACACGGTCGAGCAGAGAGTATGAAATCGCCGACGGTGACGAAGTTCCGTC 299
Query 314 CTCACATGTGCCTGTGATGCTCGGAGAGGTTCTTGACATTTTCTCTTCCGTTCGCTTGCG 373
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CTCACATGTGCCTGTGATGCTCGGAGAAGTTCTTGACATTTTCTCTTCCGTTCGCTTGCG 359
Query 374 AAGTTTCGTTGATTGTACTCTTGGCGCAGCTGGTCACTCTTCTTCTATCATTCAAAGCCA 433
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 AAGCTTCGTTGATTGTACTCTTGGCGCTGCTGGTCACTCTTCTTCTATTATTCAAAGCCA 419
Query 434 CTCTGAATTGAAGAATTTTGTTGGAATGGATGTTGATCCTGTGGCAAGGAAACTGGGACA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CTCTGAATTGAAGAATTTTGTTGGAATGGATGTTGATCCTGTGGCAAGGAAACTGGGTCA 479
Query 494 CTTTCATATTGATTCGCTCATGCATCCAACTTTGAAGGCTTCTATAGTGTTGAAGAACTT 553
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 CTTTCATATTGATTCTCTCATGCATCCAACTTTGAAGGCTTCTATTGTGTTGAAGAACTT 539
Query 554 CAAATACATCAAATCTGTGATTGCTGATACGCAACCGGAGTTGTTAGATGTAGGTGTTGA 613
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 CAAATACATCAAATCTGTGGTTGCTGATACGCAACCGGAATTGTTAGATGTAGGTGTTGA 599
Query 614 TGGTATTCTTATGGACCTGGGAATGTCATCTATGCAGGTAAACAATCCTGAAAGAGGGTT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGGTATTCTTATGGACCTGGGAATGTCATCTATGCAGGTAAACAATCCTGAAAGAGGGTT 659
Query 674 TAGTGTTCTTCAAGAGGGACCTCTTGATATGCGTATGGATCCTCAGGCGACTCTAACAGC 733
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 660 TAGCGTTCTTCAAGAGGGACCTCTTGATATGCGAATGGATCCTCAGGCAACTCTAACAGC 719
Query 734 AGAAGATATAGTGAATTCGTGGCCAGAATCTGAACTGGGAAGAGTTCTACGGGATTATGG 793
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 AGAAGATATAGTGAATTCGTGGCCAGAATCTGAACTGGGAAGAGTTCTACGTGATTATGG 779
Query 794 CGAAGAAAGCAATTGGTATTTACTTCAAAATAGAATTGTTAAGGCTCGACTTAATGGCGG 853
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 CGAAGAAAGCAATTGGCATTTACTTCAAACTAGAATTGTTAAGGCTCGACTTAATGGCGG 839
Query 854 GTTACATTCTACTGGTGAACTGGTGGATCTCATTCGGGGTACGTCACCAGCAAGCAGAGG 913
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 GTTACATTCTACTGGTGAACTGGTGGATCTCATTCGGGGTATGTCACCAGCAAGCAGAGG 899
Query 914 AGGCAGACAAGGCTGGATAAAGACAGCAACACGTGTGTTTCAAGGCCTAAGGATTGCAGT 973
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGGCAGACAAGGTTGGATAAAGACAGCAACACGTGTGTTTCAAGGCCTAAGGATTGCAGT 959
Query 974 GAACGACGAACTCAAGACACTACAAAACTCACTCTACTCATCATTCGATGTTCTCGCTCC 1033
|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||
Sbjct 960 GAACGACGAACTCAAGACGCTACAAAACTCTCTCTACTCATCGTTCGATGTTCTCGGTCC 1019
Query 1034 AGGTGGGAGACTAGCAGTTATCTCCTTTCACAGTCTGGAGGATCGGGTTGTAAAACAAAC 1093
|||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1020 AGGTGGGAGACTAGCAGTCATTTCCTTCCACAGTCTGGAGGATCGAGTTGTAAAACAAAC 1079
Query 1094 GTTCCTCGACATCTTAGGGTTTCAAAGAGAAGAGATCAACGGAGAGGGAAGTAGTGTAAA 1153
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1080 ATTCCTCGACATCTTAGGGTTTCAAAGAGAAGAGATAAACGGAGAGGGAAGTAGTGTGAA 1139
Query 1154 ACCGGAAAGGCAAATCGAAGAAAGAGTAGAGAAGGAATTAAAAGAGAAAGAAGAGTGGAT 1213
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1140 ACCAGAAAGGCAAATCGAAGAAGGAGTAGAGAAGGAATTAAAAGAGAAAGAAGACTGGAT 1199
Query 1214 CAAACAGACAGTAATAGCGTCGAAAGGAGTAATACTGACAAAGAGACCAATAACACCTTC 1273
|||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CAAACAAACGGTAATAGGGTCGAAAGGAGTAATACTGACAAAGAGACCAATAACACCTTC 1259
Query 1274 AGAGGAAGAGGAAAGACTGAATCGCAGAGCAAGAAGTGCTAAGTTAAGAGTGATTCAGAA 1333
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1260 AGAGGAAGAGGAGAGACTCAATCGCAGAGCAAGGAGTGCTAAGTTAAGAGTGATTCAGAA 1319
Query 1334 GTTGTGATTACT--TT-ATGAAATGtt 1357
||||||||| || || ||||||||||
Sbjct 1320 GTTGTGATTGCTGCTTTATGAAATGTT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5