BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10920.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487923 jgi|Araly1|487923|fgenesh2_kg.6__1057__AT5G10920.1 2806 0.0
> Ahg487923 jgi|Araly1|487923|fgenesh2_kg.6__1057__AT5G10920.1
Length=1811
Score = 2806 bits (1519), Expect = 0.0
Identities = 1718/1814 (95%), Gaps = 14/1814 (1%)
Strand=Plus/Plus
Query 31 TCTTCTTCTCCTCCACCTAAC-CAATGGGAGCAATTGATCTCTCTTTCTCACAGAGTCTT 89
||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 3 TCTTCTTCTTCTCCACCT-ACTCAATGGGAGCAATTGATCTCTCTTTCTCACAGAGTCTC 61
Query 90 CTCTTCTCTTCGTCGCGTTCCAATCTTTCCTCCTCCACACACCGTTCCGTCTCTTTTTTG 149
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 62 CTCTTCTCTCCGTCGCGTTCCAATCTTTCCTCCTCCACACACCGTTCCGTCTCTTTTCTC 121
Query 150 CCGCCGGGAAGCAAGTCACGGTGTCTGCCGCCGTTGCGTTCAATGAGTCATGACGACGAC 209
|||||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 122 CCGCCGGGAACCAAGTCACGGTGTCTGCCGCAGTTGCGTTCAATGAGCCACGACGACGAG 181
Query 210 ACGGCCTCAAAGGAGGTGAAGCTATGGGGTGGAAGGTTCGAAGAGAGTGTCACTGAGAAA 269
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 182 ACGGCCTCAAAGGAGGTGAAGCTATGGGGCGGAAGGTTCGAAGAGAGTGTCACTGAAAAA 241
Query 270 GTGGAGAAGTTCACTGAGTCAATTTCATTTGATAAGGTTCTCTACAAGCAGGACATTATG 329
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 242 GTGGAGAAGTTCACTGAGTCAATTTCATTCGATAAGGTTCTCTACAAGCAGGACATTATG 301
Query 330 GGTAGCAAAGCTCATGCTTCAATGCTTGCTCACCAGGGGCTAATAACTGATAGCGATAAA 389
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 302 GGTAGCAAAGCTCATGCTACAATGCTCGCTCACCAGGGGCTAATAACTGATAGCGACAAA 361
Query 390 GATAGCATTTTGAGAGGTCTTGATGATATTGAGAGACAAATTGAAGCAAATAAGTTTGAA 449
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 362 GATAGCATTTTGAGAGGTCTTGATGATATTGAGACACAAATTGAAGCAGATAAGTTTGAA 421
Query 450 TGGAGGACTGATCGAGAAGATGTGCATATGAACATTGAAGCAGCTCTTACTGATCTTATT 509
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 422 TGGAGGACTGATCGAGAAGATGTGCATATGAACATTGAGGCAGCTCTTACTGATCTTATT 481
Query 510 GGTGAACCTGCAAAGAAACTTCATACTGCAAGGAGCAGAAATGACCAAGTTGCTACTGAC 569
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 482 GGTGAACCTGCAAAGAAACTTCACACTGCCCGGAGCAGAAATGACCAAGTTGCTACTGAT 541
Query 570 TTCAGGCTTTGGTGTCGTGATGCTATCGATACAATTATTGTCAAAATCAGAAATCTTCAG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 542 TTCAGGCTTTGGTGTCGTGATGCTATCGATACAATTATTGTCAAAATCAGAAACCTTCAG 601
Query 630 AG-AGCACTTGTTGAACTGGCTTTGAAGAATGAGGCTTTGATTGTTCCTGGTTATACTCA 688
| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 -GCAGCACTAGTTGCATTGGCTTTGAAGAATGAGGCTTTGATTGTTCCTGGTTATACTCA 660
Query 689 TCTTCAAAGAGCTCAGCCTGTTTTACTCCCACACGTTCTCTTAACTTTTGTAGAGCAGCT 748
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 TCTTCAAAGAGCTCAGCCTGTTTTACTCCCACACGTCCTCTTAACTTTTGTAGAGCAGCT 720
Query 749 CGAACGTGATGCTGGTCGTTATGTGGACTGTCGAGCAAGGCTAAATTTCTCCCCCCTGGG 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 CGAACGTGATGCTGGTCGTTATGTGGACTGTCGAGCAAGGCTAAATTTCTCCCCCCTAGG 780
Query 809 AGCTTGTGCTTTGGCTGGAACTGGTCTGCCTATTGATAGGTTTATGACTGCAAATGCTCT 868
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 781 AGCTTGTGCTTTGGCTGGGACTGGTCTACCTATTGATAGGTTTATGACTGCAAATGCTCT 840
Query 869 TGGATTTACCGAACCAATGAGAAACAGTATCGATGCAGTCTCAGACCGAGACTTCGTGCT 928
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 841 TGGATTTACCGAACCAATGAGAAACAGTATCGATGCAGTCTCAGACCGAGATTTCGTGCT 900
Query 929 GGAGTTCTTATATACAAATGCCAACACCGGTATTCATTTATCACGGCTTGGAGAAGAGTG 988
|||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 901 AGAGTTCTTATATACAAATGCCAACACAGCTATTCACTTATCACGGCTTGGAGAAGAGTG 960
Query 989 GGTACTGTGGGCTTCCGAGGAGTTTGGGTTCATGACTCCAAGTGATTCTGTGTCAACCGG 1048
|||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 961 GGTACTCTGGGCTTCCGAGGAGTTTGGTTTCCTGACTCCAAGTGATTCTGTGTCAACCGG 1020
Query 1049 AAGTAGTATAATGCCACAGAAGAAAAATCCAGACCCAATGGAACTTGTCAGAGGAAAATC 1108
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAGCAGTATTATGCCACAGAAGAAAAATCCAGACCCAATGGAACTTGTCAGAGGAAAATC 1080
Query 1109 CGCAAGAGTCATAGGCGATCTGGTCACTGTCTTAACACTGTGCAAAGGACTTCCCCTTGC 1168
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1081 CGCAAGAGTCATAGGCGATCTGGTCACTGTCCTAACACTGTGCAAAGGACTTCCCCTTGC 1140
Query 1169 TTACAACAGAGATTTTCAAGAAGACAAAGAGCCGATGTTCGATAGTACCAAGACAATAAT 1228
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1141 TTACAACCGAGATTTTCAAGAAGATAAAGAGCCGATGTTTGATAGTACCAAGACAATAAT 1200
Query 1229 GGGAATGATCGATGTATCTGCAGAATTTGCTCAGAATGTTACATTCAACGAAGACAGAAT 1288
||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1201 TGGAATGATCGATGTATCTGCAGAATTTGCCCAGAATGTCACGTTCAACGAAGACAGAAT 1260
Query 1289 CAAGAAAAGTCTTCCCGCAGGACATCTT-GATGCGACTACTCTCGCTGATTATCTTGTGA 1347
||||||||||||||| || ||||| ||| || ||||||||||||||||||||||||||||
Sbjct 1261 CAAGAAAAGTCTTCCTGCCGGACA-CTTGGACGCGACTACTCTCGCTGATTATCTTGTGA 1319
Query 1348 AGAAGG---GGATGCCTTTTAGGTCATCTCATGACATAGTTGGAAAACTAGTTGGAGTTT 1404
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGAAGGTAATGATGCCTTTTAGGTCATCTCATGACATAGTTGGAAAACTAGTTGGAGTTT 1379
Query 1405 GCGTCTCAAAAGGCTGTGAACTTCAGAACTTAAGTCTTGAAGAGATGAAAAAGCTGAGCC 1464
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GTGTCTCAAGAGGCTGTGAACTTCAGAACTTAAGTCTTGAAGAGATGAAAAAGCTGAGCC 1439
Query 1465 CTGTGTTTGAAGAAGATGTGTTTGGATTTTTGGGGGTTGAAAATTCAGTCAATAAGTTCA 1524
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1440 CTGTGTTTGAAGAAGATGTGTTTGGATTTTTGGGCGTTGAAAATTCAGTCAATAAGTTCA 1499
Query 1525 GTTCCTATGGGTCAACAGGATCAAACTGTGTTGCTGAGCAACTTGGCTACTGGGTCAACA 1584
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1500 GTTCTTATGGGTCAACAGGATCAAACTGTGTTGATGAGCAACTTGGCTACTGGGTCAACA 1559
Query 1585 AGCTCAACATTACTTCCACCTGATCCGGACCAAACCATTAGCAAAAGATTTGATGACGTT 1644
|||| ||||||||| |||||||| || || ||||||||||||||||||||||||||| ||
Sbjct 1560 AGCTGAACATTACTACCACCTGAGCCAGAACAAACCATTAGCAAAAGATTTGATGACATT 1619
Query 1645 TGTGTAATTTTCATATTTATTGAGGATTTTTGTCGTTAATACCAGGAAGATTTCAAGCAA 1704
|||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||
Sbjct 1620 TGTGTAATTTTCATATTTATTGAGGATTTTGGTCGTTAATACCAAGAAGCTTTTAAGCAA 1679
Query 1705 CATGTTGCAGCGGTTTGAGAA--GACCCACAAACAAAATAAGTTTTGTAATATTTGAAAT 1762
|||||||||||||||||| || | | ||||| | |||||||||||||||||||
Sbjct 1680 CATGTTGCAGCGGTTTGACTTTTGAGGAAGACCCAAAA-A-GTTTTGTAATATTTGAAAT 1737
Query 1763 CGAGATAATGTGGAAGAGTTTGGTATTCTTCTCATTTCAA-TGCTCTCTACAATATCAAT 1821
|||| |||||||||||||||||| ||||| |||||||||| |||||||| ||||||||||
Sbjct 1738 CGAGGTAATGTGGAAGAGTTTGGCATTCTCCTCATTTCAAATGCTCTCTGCAATATCAAT 1797
Query 1822 CTTTTTATATTCTA 1835
||||| ||||||||
Sbjct 1798 CTTTTCATATTCTA 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5