BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10930.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487924 jgi|Araly1|487924|fgenesh2_kg.6__1058__AT5G10930.1 2466 0.0
Ahg894415 jgi|Araly1|894415|Al_scaffold_0006_2411 992 0.0
Ahg896438 jgi|Araly1|896438|Al_scaffold_0005_404 734 0.0
> Ahg487924 jgi|Araly1|487924|fgenesh2_kg.6__1058__AT5G10930.1
Length=1717
Score = 2466 bits (1335), Expect = 0.0
Identities = 1567/1675 (94%), Gaps = 32/1675 (2%)
Strand=Plus/Plus
Query 1 ATTTGCACActtcttcttcttcttcctcatttctcttcctctcccatattccatggaatt 60
||||||||||||| |||||||| | || | ||||||||||||| |||||||||| ||
Sbjct 1 ATTTGCACACTTCATCTTCTTC-T--TC---T-TCTTCCTCTCCCAAATTCCATGGAGTT 53
Query 61 gctctacttcttcACCTATGAGAGTAATATA-TC--CTCATGTACTCAAAATACTAATCA 117
||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||
Sbjct 54 TCTCTACTTCTTCACCTATGAGAGTAATCTATTCTACTCATGTACTCAAAATACTAACCA 113
Query 118 AACTTCATGCTTCAACACCACCTTTTCTTAATCCT-C--CTTCTTCATC-T--TCTTCTT 171
||| ||||| ||||||||||||||||||||||||| | |||||||||| | |||||||
Sbjct 114 AACCTCATGGTTCAACACCACCTTTTCTTAATCCTCCTTCTTCTTCATCATCATCTTCTT 173
Query 172 CCACTATTTCATTTTCCCT-AG-----TCGGTGTAAATATCAAATGGAGGAAGAACGGCG 225
| | | ||||||||||||| || |||| || | |||||||||||||||||||||||
Sbjct 174 CTAATCTTTCATTTTCCCTAAGCTTCATCGGAGT-AGTATCAAATGGAGGAAGAACGGCG 232
Query 226 AGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCCAAAGT 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 233 AGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCGAAAGT 292
Query 286 CTATTACGGCAAAGAGATCATCGGCGGCGAGTGCGTCGCAATCAAAGTCATCAACAAGGA 345
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 293 CTATTACGGCAAAGAGATCATCGGTGGCGAGTGCGTCGCCATCAAAGTCATCAACAAGGA 352
Query 346 TCAAGTAATGAAGAGACCTGGAATGATGGAACAAATCAAACGCGAGATTTCAATCATGAA 405
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 353 TCAAGTAATGAAGAGACCTGGAATGATGGAACAGATCAAACGCGAGATTTCAATCATGAA 412
Query 406 GCTCGTTCGTCATCCCAACATAGTTGAATTGAAAGAAGTCATGGCTACGAAGACCAAGAT 465
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 413 ACTCGTTCGTCATCCAAACATCGTTGAATTAAAAGAAGTCATGGCTACGAAGACGAAGAT 472
Query 466 CTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTTTTCTGCAAAATCTCTAAAGGTAA 525
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 473 CTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTGTTCTGCAAAATCTCTAAAGGTAA 532
Query 526 GTTACACGAAGACGCTGCTCGTAGATATTTCCAGCAATTGATCTCAGCCGTTGATTATTG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GTTACACGAAGACGCTGCTCGTAGATATTTCCAGCAATTGATCTCAGCCGTTGATTATTG 592
Query 586 CCATAGTAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAATCTTCTTTTAGATGAGAA 645
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 593 CCATAGCAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAACCTTCTTTTAGATGAGAA 652
Query 646 TGGAGATTTGAAAATCTCCGATTTCGGATTATCTGCGTTACCGGAACAGATTCTTCAAGA 705
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 653 TGGAGATTTGAAAATCTCCGATTTCGGATTATCTGCGTTACCGGAGCAGATTCTTCAAGA 712
Query 706 CGGATTGCTTCATACGCAGTGTGGAACTCCGGCGTATGTTGCGCCGGAGGTATTAAAGAA 765
|||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||
Sbjct 713 TGGATTGCTTCATACGCAGTGTGGAACTCCGGCTTACGTTGCGCCGGAGGTTTTACGGAA 772
Query 766 GAAAGGATACGACGGCGCGAAAGCTGATATCTGGTCGTGCGGCGTCGTTTTGTATGTTCT 825
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 773 GAAAGGATACGACGGCGCGAAGGCGGATATCTGGTCATGCGGCGTCGTTTTGTATGTGCT 832
Query 826 TCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATGTATCGGAAGATTTT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATGTATCGGAAGATTTT 892
Query 886 CAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAGCGAGGAGGTTGATTTCGAA 945
||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||
Sbjct 893 CAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCGCCGGAATCGAGGCGGTTGATTTCTAA 952
Query 946 ACTCCTCGTTGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGCCTTG 1005
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 953 ACTCCTCGTCGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGACTTG 1012
Query 1006 GCTCCGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCA 1065
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GCTTCGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCA 1072
Query 1066 AAGCAGCAAAAACAACgaagaagaagaagaagaCGGAGATTGTGAAAATCAAACAGAGCC 1125
|||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1073 GAGCAACAACAACAACGACGAAGAAGAAGAAGACGGAGATTGGGAAAATCAAACAGAGCC 1132
Query 1126 GATATCGCCGAAATTCTTCAACGCTTTCGAATTCATATCCTCGATGTCTTCCGGATTTGA 1185
||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1133 GATTTCGCCGAAGTTCTTCAACGCTTTCGAATTCATCTCCTCGATGTCTTCCGGATTCGA 1192
Query 1186 CT-TATCGAGCTTGTTCGAGAGCAAGAGGAAAGTGCAATCGGTGTTTACGTCACGGTCGT 1244
| | || |||||||||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct 1193 -TCTCTCAAGCTTGTTCGAGAGTAAGAGGAAAGTGCAATCGGTGTTCACGTCAAAATCGT 1251
Query 1245 CGGCGACGGAGGTAATGGAGAAGATAGAAACGGTTACGAAGGAGATGAACATGAAAGTGA 1304
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1252 CGGCGACGGAGCTAATGGAGAAGATCGAAACGGTTACGAAGGAGATGAACATGAAAGTGA 1311
Query 1305 AGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGT 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGC 1371
Query 1365 TGTCGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATATCGGTGGTGGAGTTTTGCA 1424
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1372 TGTCGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATCTCGGTGGTGGAGTTTTGCA 1431
Query 1425 AATCGGCGGGAGATACTTTGGAGTACGATAGGTTATACGAAGAAGAAGTACGGCCGGCGT 1484
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1432 AATCGGCGGGAGATACTTTGGAGTACGATAGGTTATACGAAGAAGAAGTCCGGCCGGCGT 1491
Query 1485 TAAACGACATCGTCTGGTCATGGCACGGTGATAATAATAACA---CTTCTTCCGAGGATT 1541
|||| |||||||| |||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1492 TAAATGACATCGTTTGGTCATGGCACGGTGATAATAATAATAATACTTCTTCCAAGGATT 1551
Query 1542 GTTGAATCAGTAGTTTTTGGTTCTGATTTAACCGGTTATCGGTTAACGTAGTATAACTAA 1601
|||||||||| ||| ||||||||| | ||||||| || ||||||||||| |||| |||
Sbjct 1552 GTTGAATCAGGAGTGTTTGGTTCTAAGTTAACCGATTTTCGGTTAACGT--TATA--TAA 1607
Query 1602 GAACTGTTACATTGAACCCAAattttctttggtttaataaaattttggttttact 1656
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1608 GGACTGTTACATTGAACCTAAATTTTCTTTGGTTTAATAAAATTTTGGTTTTACT 1662
> Ahg894415 jgi|Araly1|894415|Al_scaffold_0006_2411
Length=1443
Score = 992 bits (537), Expect = 0.0
Identities = 1074/1324 (81%), Gaps = 73/1324 (6%)
Strand=Plus/Plus
Query 224 CGAGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCCAAA 283
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 97 CGAGTTCTGTTCGGAAAATACGAGATGGGAAGGTTACTAGGCAAAGGAACATTCGCAAAA 156
Query 284 GTCTATTACGGCAAAGAGATCATC-GGCGGCGAGTGCGTCGCAATCAAAGTCATCAACAA 342
|||||||||||||||||||| | | ||| || |||| ||||||||| ||||||||||
Sbjct 157 GTCTATTACGGCAAAGAGAT-AACAACCGGAGAAAGCGTTGCAATCAAAATCATCAACAA 215
Query 343 GGATCAAGTAAT-GAA-GAGACCTGGAATGATGGAACAAATCAAACGCGAGATTTCAATC 400
|||||||| || || | || || |||||||||||||||||||| ||||| ||||||
Sbjct 216 AGATCAAGTCATCAAACGTGA--AGGTATGATGGAACAAATCAAACGAGAGATCTCAATC 273
Query 401 ATGAAG-CTCGTTCGTCATCCCAACATAGTTGAATTGAAAGAAGTCATGGCTACGAAGAC 459
||| || || ||||||||||| ||||| || ||||| |||||||||||||| || || ||
Sbjct 274 ATG-AGACTTGTTCGTCATCCAAACATCGTCGAATTAAAAGAAGTCATGGCAACAAAAAC 332
Query 460 CAAGATCTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTTTTCTGCAAAATC-TCTA 518
|||||||||||| ||||||| | |||||||||||| || ||||||| ||| ||| | ||
Sbjct 333 AAAGATCTTCTTCATCATGGAATACGTTAAAGGCGGTGAACTTTTCTCCAAGATCGT-TA 391
Query 519 AAGGTAAG-TTACACGAAGACGCTGCTCGT-AGATATTTCCAGCAATTGATCTCAGCCGT 576
|||| ||| ||| | |||||| |||||||| || || ||||| ||||| |||||||||||
Sbjct 392 AAGGAAAGCTTA-AAGAAGACTCTGCTCGTAAG-TACTTCCAACAATTAATCTCAGCCGT 449
Query 577 TGATTATTGCCATAGTAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAATCTTCTT-T 635
||||| ||| |||||||||||||| ||||| || ||||| ||||| ||||||| ||||
Sbjct 450 TGATTTTTGTCATAGTAGAGGCGTGTCTCACCGAGATCTAAAACCGGAGAATC-TCTTGG 508
Query 636 TAGATGAGAATGGAGAT-TTGAAAATCTCCGATTTCGGAT-TATCTGCGTTACCGGAACA 693
| || ||||| || ||| || || | ||||||||||| | | ||||| ||||| |||||
Sbjct 509 TCGACGAGAACGGTGATCTT-AAGGTGTCCGATTTCGG-TCTCTCTGCTTTACCTGAACA 566
Query 694 GATTCTT-CAAGACGGATTGCTTCATACGCAGTGTGGAACTCCGGCGTATGTTGCGCCGG 752
|||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 567 GATT-TTACAAGACGGTTTGCTTCATACTCAGTGTGGAACTCCGGCGTATGTTGCGCCGG 625
Query 753 AGGTATTAAAGAAGAAAGGATACGACGGCGCGAAAGCTGATATCTGGTCGTGCGGCGTCG 812
|||| || | ||||||||| |||||||| || ||||||||||| |||||||| || || |
Sbjct 626 AGGTTTTGAGGAAGAAAGGTTACGACGGAGCTAAAGCTGATATTTGGTCGTGTGGTGT-G 684
Query 813 TT-TTGTATGTTCTTCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATG 871
| ||||| || ||||||||||| | ||| ||||||||||||||||| || ||||| |||
Sbjct 685 ATCTTGTACGTACTTCTCGCCGGTTTTTTACCGTTTCAAGATGAGAACCTAATGAAAATG 744
Query 872 TATCGGAAGATTTTCAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAG-CGAG 930
||||||||||| |||| | |||| ||||| ||||||||||||||||| ||||| | | |
Sbjct 745 TATCGGAAGATCTTCAAATCGGAGTTTGAGTTTCCGCCGTGGTTTTCACCGGA-GTCCAA 803
Query 931 GAGGTTGATTTCGAAACTCCTCGTTGTAGATCC-AGATCGACGGATCTCGATTCCGGCGA 989
||| ||||||||||| || | ||||| ||||| | || |||||||||||| || ||||
Sbjct 804 GAGATTGATTTCGAAGCTTTTAGTTGTTGATCCTA-ATAAACGGATCTCGATACCAGCGA 862
Query 990 TTATGAGAACGCCTTGGCTCCGGAAAAACTTCA-CTCCGCCGTTAGCTTTCAAAATCGAC 1048
|||||||||| || ||| | || |||||||||| ||| ||| | |||||||| |||||
Sbjct 863 TTATGAGAACACCGTGGTTTCGTAAAAACTTCAACTCT-CCGATCGCTTTCAAGATCGAT 921
Query 1049 GAACCGATTTGTTCTCAAAGCAGCAAAAACAACgaagaagaagaagaagaCGGAGATTGT 1108
|| | ||| | || || | |||| |||||| ||| | || | |
Sbjct 922 GA---G-------CTC---G-AG-AACCAGAACGTAGAAGACGAA-AC-ACC-A-AC--- 959
Query 1109 GAA-AATCAAACAGAGCCGATATCGCCGAAATTCTTCAACGC-TTTCGAATTCATATCCT 1166
|| || ||| || ||| | |||||||| ||||| ||||| ||| |||||||| ||||
Sbjct 960 -AACAA-CAA-CA---CCGGTCTCGCCGAAGTTCTTTAACGCGTTT-GAATTCATCTCCT 1012
Query 1167 CGATGTCTTCCGGATTTGACTTATCGAGCTTGTTCGAGAGCAAGAGGAAAG-TGCAA-TC 1224
||||||| || ||||| || || ||||| |||||||||| ||| ||||| | || | ||
Sbjct 1013 CGATGTCATCAGGATTCGATTTGTCGAGTTTGTTCGAGAACAAAAGGAA-GCTG-AGCTC 1070
Query 1225 GGTGTTTACGTCACGGTCGTCGGCGACGGAGGTAATGGAGAAGATAGAAACGGTTACG-A 1283
||||||||||||||| ||||||| ||||| |||||| |||| | |||| || || | |
Sbjct 1071 TATGTTTACGTCACGGTGGTCGGCGTCGGAGATAATGGCGAAGCTTGAAA-GGATAGGGA 1129
Query 1284 AGGAGATGAACATGAAAGTGAAGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAA 1343
| |||||||||||||| || ||||| || ||||||||||||||||||||| |||| ||
Sbjct 1130 AAGAGATGAACATGAAGGTTAAGAGGACTAAGGATTTTAAAGTGAAGATGTTGGGGACAA 1189
Query 1344 CGGAAGGGAGAAAAGGACGGTT-GTCGATGACGGCGGAAGTGTTT-GAAGTAGCGCCGGA 1401
|||||||||| ||||||| | | | || |||||||||| || ||| || || |||||| |
Sbjct 1190 CGGAAGGGAGGAAAGGACAGATCG-CGGTGACGGCGGAGGT-TTTCGAGGTTGCGCCGCA 1247
Query 1402 GATAT-CGGTGGTGGAGTTTTGCAAATCGGCGGGAGATACTTTGGAGTACGATAGGTTAT 1460
| | | | || || ||||| || |||||||||||||||||||||||||| || ||||||
Sbjct 1248 GGT-TGCCGTCGTTGAGTTATGTAAATCGGCGGGAGATACTTTGGAGTATAATCGGTTAT 1306
Query 1461 ACGAAGAAGAAGTACGGCCGGCGTTAAACGACATCGTCTGGTCATGGCACGGTGATAATA 1520
| |||||| |||| ||||||||||| | || || || ||||| |||||||||||||||
Sbjct 1307 AAGAAGAACAAGTCCGGCCGGCGTTGGAGGAGATAGTTTGGTCGTGGCACGGTGATAATC 1366
Query 1521 ATAA 1524
||||
Sbjct 1367 ATAA 1370
> Ahg896438 jgi|Araly1|896438|Al_scaffold_0005_404
Length=738
Score = 734 bits (397), Expect = 0.0
Identities = 479/518 (92%), Gaps = 7/518 (1%)
Strand=Plus/Plus
Query 890 GCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAGCGAGGAGGTTGATTTCGAAACTC 949
||||||||||||||||||||||||||||| || ||| ||||| |||||||||| ||||||
Sbjct 178 GCGGATTTTGAATTTCCGCCGTGGTTTTCGCCTGAATCGAGGCGGTTGATTTCTAAACTC 237
Query 950 CTCGTTGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGCCTTGGCTC 1009
| ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 238 CCCGTCGTAGATCCAGATCGACGGATCTTGATTCCGGCGATTATGAGAACGACTTGGCTT 297
Query 1010 CGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCAAAGC 1069
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 298 CAGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTC--AG- 354
Query 1070 AGCAAAAACAACgaa-gaagaagaagaagaCGGAGATTGTGAAAATCAAACAGAGCCGAT 1128
||||| |||||| || ||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 355 AGCAACAACAAC-AACGAAGAAGAAGACGACGTAGATTGGGAAAATCAAACAGAGCCGAT 413
Query 1129 ATCGCCGAAATTCTTCAACGCTTTCGAATTCATATCCTCGATGTCTTCCGGATTTGACT- 1187
||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 414 TTCGCCAAAATTCTTCAACGCTTTCGAATTCATCTCCTCGATGTCTTCCGGATTCGA-TC 472
Query 1188 TATCGAGCTTGTTCGAGAGCAAGAGGAAAGTGCAATCGGTGTTTACGTCACGGTCGTCGG 1247
| ||||||||||||||||| |||||||||||| |||||||||| |||||| |||| ||
Sbjct 473 TCTCGAGCTTGTTCGAGAGTAAGAGGAAAGTGAAATCGGTGTTCACGTCAAAATCGTTGG 532
Query 1248 CGACGGAGGTAATGGAGAAGATAGAAACGGTTACGAAGGAGATGAACATGAAAGTGAAGA 1307
|||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 533 CGACGGAGGTAATGGAGAGGATCGAAACGGTTACGAAAGAGATGAACATGAAAGTGAAGA 592
Query 1308 GAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGTTGT 1367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 593 GAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGCTGT 652
Query 1368 CGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATA 1405
||||||||||||||||||||||||||||||| ||||||
Sbjct 653 CGATGACGGCGGAAGTGTTTGAAGTAGCGCCAGAGATA 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5