BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10946.1 Length=833 Score E Sequences producing significant alignments: (Bits) Value Ahg893008 jgi|Araly1|893008|Al_scaffold_0006_1004 289 3e-77 > Ahg893008 jgi|Araly1|893008|Al_scaffold_0006_1004 Length=291 Score = 289 bits (156), Expect = 3e-77 Identities = 222/251 (88%), Gaps = 15/251 (6%) Strand=Plus/Plus Query 94 TTTCTCTATTTAAT---CACTTCTCACTTTCGCTATATAGAGAGA-GAAGTAAAGCAGCC 149 |||||||||||||| |||||||| |||||| |||||||||||| ||| ||||||||| Sbjct 44 TTTCTCTATTTAATCACCACTTCTCTCTTTCGTTATATAGAGAGATAAAG-AAAGCAGCC 102 Query 150 GACACATGTATGCTTTGCATGAAAGAGAGAGTGAACTCTAGCACACATGAATTGGCCCCA 209 ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |||| Sbjct 103 GACACATGTATGCTTTGCATGAAAGAGAGAGAGAACTCTAGCACATATGAATT-GTCCCA 161 Query 210 ACTCCT-AGCTTCAAAAGATGAGTCAAAGTTATGCAGATTGCACTTGAATCCATGGAATA 268 ||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 162 ACT-CTCAACTTCAAAAGGTGAGTCAAAGTTATGCAGATTGCACTTGAATCCATGGAATA 220 Query 269 AGATA------A-TGGCGAAAAGTTTGGAGTTGATGTGCTCAAAATTTTGGGCATTGTAG 321 |||| | ||||||||||||||||||||||||||||||| | ||||||||| ||| Sbjct 221 AGATTGGTTTTAGTGGCGAAAAGTTTGGAGTTGATGTGCTCAAACTCTTGGGCATTATAG 280 Query 322 CTCCTATGTAA 332 | |||||||| Sbjct 281 TTTCTATGTAA 291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30803316936 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5