BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10946.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893008 jgi|Araly1|893008|Al_scaffold_0006_1004 289 3e-77
> Ahg893008 jgi|Araly1|893008|Al_scaffold_0006_1004
Length=291
Score = 289 bits (156), Expect = 3e-77
Identities = 222/251 (88%), Gaps = 15/251 (6%)
Strand=Plus/Plus
Query 94 TTTCTCTATTTAAT---CACTTCTCACTTTCGCTATATAGAGAGA-GAAGTAAAGCAGCC 149
|||||||||||||| |||||||| |||||| |||||||||||| ||| |||||||||
Sbjct 44 TTTCTCTATTTAATCACCACTTCTCTCTTTCGTTATATAGAGAGATAAAG-AAAGCAGCC 102
Query 150 GACACATGTATGCTTTGCATGAAAGAGAGAGTGAACTCTAGCACACATGAATTGGCCCCA 209
||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||
Sbjct 103 GACACATGTATGCTTTGCATGAAAGAGAGAGAGAACTCTAGCACATATGAATT-GTCCCA 161
Query 210 ACTCCT-AGCTTCAAAAGATGAGTCAAAGTTATGCAGATTGCACTTGAATCCATGGAATA 268
||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 162 ACT-CTCAACTTCAAAAGGTGAGTCAAAGTTATGCAGATTGCACTTGAATCCATGGAATA 220
Query 269 AGATA------A-TGGCGAAAAGTTTGGAGTTGATGTGCTCAAAATTTTGGGCATTGTAG 321
|||| | ||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 221 AGATTGGTTTTAGTGGCGAAAAGTTTGGAGTTGATGTGCTCAAACTCTTGGGCATTATAG 280
Query 322 CTCCTATGTAA 332
| ||||||||
Sbjct 281 TTTCTATGTAA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5