BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10960.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487926 jgi|Araly1|487926|fgenesh2_kg.6__1060__AT5G10960.1 2032 0.0
> Ahg487926 jgi|Araly1|487926|fgenesh2_kg.6__1060__AT5G10960.1
Length=1345
Score = 2032 bits (1100), Expect = 0.0
Identities = 1284/1367 (94%), Gaps = 36/1367 (3%)
Strand=Plus/Plus
Query 1 TTTATCACTTCATCTTCTCC--AAAGCCAT-ACCACTTGAAACCTCTCTCTCTGGTTGAC 57
|||||||||||||| ||||| |||| | | |||||||||||||||||||||||||||||
Sbjct 1 TTTATCACTTCATCGTCTCCAAAAAG-CTTAACCACTTGAAACCTCTCTCTCTGGTTGAC 59
Query 58 CCGATAATTTCTCTCTCGCAGACGCACAGATCTCTCTTCGAATCTGCTAGATCTGTTCCT 117
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 60 CCGATAATTTCTCTCTCGTAGACGCACAGATCTCTCTTCAAATCTGCTAGATCTGTTCGT 119
Query 118 TTTCTTACATCTGTATTGCGAAACCTCTGATCGGAAGGTTTCGTTTACAGATCT----A- 172
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 120 TTTCTTACATCTGTATTGCGAAACCTCAGATCGGAAGGTTTCGTTTACAGATCTAGCGAT 179
Query 173 ---CCGATACGAGTTTCGCAGTATTTCCGAGTTCCGACGTATGCTTTGTTTTCAGATCTG 229
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCCGTTACAAGTTTCGTTGTATTTCCGAGTTCCGACGTATGCTTTGTTTTCAGATCTG 239
Query 230 GGTTTGTTGTATATCTAGAAATGGCGGAGACTTTGAAAGAAGATTCGATTATGATTCGAG 289
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTTTGTTGTATCTCTAGAAATGGCGGAGACTTTGAAAGAAGATTCGATTATGATTCGAG 299
Query 290 AGGTTTGGGATTACAATTTGGTTGAAGAATTCGCGTTGATCCGTGAGATTGTTGACAAAT 349
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 300 AGGTTTGGGATTACAATTTGGTTGAAGAATTCGCGTTGATCCGTGAAATCGTTGACAAAT 359
Query 350 TCAGCTATATCGCTATGGATACTGAGTTTCCAGGTGTGGTTTTGAAGCCTGTTGCTACTT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCAGCTATATCGCTATGGATACTGAGTTTCCAGGTGTGGTTTTGAAGCCTGTTGCTACTT 419
Query 410 TCAAGTACAATAACGATCTTAACTACAGGACTCTCAAGGAAAATGTCGATTTGTTGAAAT 469
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 420 TTAAGTACAATAACGATCTTAACTATAGGACTCTCAAGGAAAATGTTGATTTGTTGAAAT 479
Query 470 TGATTCAAGTTGGGTTAACTTTTTCTGATGAGAATGGGAATCTTCCGACTTGTGGGACGG 529
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 480 TGATTCAAGTTGGTTTAACGTTTTCTGATGAGAATGGGAATCTTCCCACTTGTGGGACGG 539
Query 530 ATAAGTTCTGCATCTGGCAATTCAATTTCCGTGAGTTCAACATCGGTGAGGATATCTACG 589
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 540 ATAAGTTCTGCATCTGGCAGTTCAATTTCCGTGAGTTCAATATCGGTGAGGATATCTACG 599
Query 590 CGAGTGAGTCTATTGAGCTGTTGCGTCAGTGTGGGATTGATTTCAAGAAGAACATTGAGA 649
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAAGTGAGTCGATTGAGCTGTTGCGTCAGTGTGGGATTGATTTCAAGAAGAACATTGAGA 659
Query 650 AAGGTATTGATGTGGTTAGGTTTGGTGAGCTTATGATGTCGTCTGGGATTGTTTTGAACG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAGGTATTGATGTGGTTAGGTTTGGTGAGCTTATGATGTCGTCTGGGATTGTTTTGAACG 719
Query 710 ATGCTATCTCGTGGGTTACGTTCCATGGTGGATATGATTTCGGGTATTTGGTTAAGTTGT 769
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 720 ATGCTATCTCTTGGGTTACGTTCCATGGAGGATATGATTTCGGGTATTTGGTTAAACTGT 779
Query 770 TGACTTGTAAGGAATTGCCTCTCAAGCAAGCTGATTTCTTCAAGCTTCTGTATGTGTATT 829
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGACTTGCAAGGAATTGCCCCTCAAGCAAGCTGATTTCTTCAAGCTTCTGTATGTGTATT 839
Query 830 TCCCTACGGTTTACGATATCAAGCACTTGATGACGTTCTGCAACGGACTGTTTGGTGGAT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 TCCCTACGGTTTACGATATCAAGCACTTGATGACGTTCTGCAACGGACTGTTTGGCGGAT 899
Query 890 TGAACAGACTTGCGGAGCTTATGGGAGTGGAGAGAGTTGGGATTTGTCATCAAGCTGGGT 949
|||||||||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct 900 TGAACAGACTCGCCGAGCTTATGGGTGTGGAAAGAGTAGGGATCTGTCATCAAGCTGGGT 959
Query 950 CGGATAGCTTGCTCACCTTAGGGTCGTTTAGGAAGCTCAAGGAACGTTATTTCCCGGGAT 1009
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 CAGATAGCTTGCTCACCTTAGGCTCGTTTAGGAAGCTCAAGGAACGTTATTTCCCGGGAT 1019
Query 1010 CAACTGAGAAATACACTGGAGTCTTGTATGGTCTAGGTGTGGAAGATGGTACTACTACTA 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAACTGAGAAATACACTGGAGTCTTGTATGGTCTAGGTGTGGAAGATGGTACTACTACT- 1078
Query 1070 CTGTTGCTAATTAAGAAGAAAGGAATGAAAGATACTTTGAAAATTCCAGGGAAGTGCGAT 1129
|||||||||||||||||||| | | | ||| ||||||||||||||| ||| ||
Sbjct 1079 --GTTGCTAATTAAGAAGAAAG-A-T-A------CTT-GAAAATTCCAGGGAACTGCAAT 1126
Query 1130 TAGATATATTTCTTTAGTCTTTGTGAGTGTGAGAAGACCAAAATAGAATCGTCGTTGTGT 1189
||||| | ||||||||| |||||||||||||||| |||| |||||| ||| ||||||
Sbjct 1127 TAGAT-T-TTTCTTTAGACTTTGTGAGTGTGAGA---CCAAT-TAGAATTGTCTTTGTGT 1180
Query 1190 AAATTGGCAAATT-GGTGTTAGTAAGTGACTTGTTGTGTCTTTGTTGCT-TTGTTTTCAG 1247
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1181 AAATTGGCAAATTTGGTGT-AGTAAGTGACTTGTTGTGTCTTTGTTGCTGTTGTTTTCAG 1239
Query 1248 GAAAACCCCTTGTGATCAAAATTTGAGGGGTTTTTGTTTT-AGCTTGAGTTTCTGAATGT 1306
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1240 GAAAACCCCTTCTGATCAAAAAA-GAGGGGTTTTTGTTTTTAGCTTGAGTTTCTGAATGT 1298
Query 1307 ATATCAATTCAGCTACCCGTTTATTTAATAAATAATCTCCAATTTTA 1353
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 ATATCAATTCAGCTACCCGTTTATTTAATAAATAATCTCCAATTTTA 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5