BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10970.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940567 jgi|Araly1|940567|scaffold_601111.1 1221 0.0
> Ahg940567 jgi|Araly1|940567|scaffold_601111.1
Length=851
Score = 1221 bits (661), Expect = 0.0
Identities = 771/822 (94%), Gaps = 15/822 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCCAGCGGAAAACCAAGATCATCTGATTCCTCATGCATCATTTCTGCATCC 60
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 22 ATGGAGTCTTCCAGCGGAAAGCCAAGATCATCTGATTCCTCATGCATCGTTTCTGCATCC 81
Query 61 ACCAGTCTTCAATTTTCAGATTCCCCAAAGCTGAGCCTAGAA-AATTACAACATAGACAC 119
|||| ||||| |||| ||||||||||||||||||||||| || |||||||||| |||| |
Sbjct 82 ACCACTCTTCCATTTCCAGATTCCCCAAAGCTGAGCCTA-AACAATTACAACAGAGACGC 140
Query 120 AGTAGCAGCACAAGAAGAAGATGATCATGACCAAAAAGAAGGAGTGGAAGGTATAAAGCT 179
|| ||| |||| || ||||||||||||| |||||||| ||||||| ||| |||
Sbjct 141 AGAAGCGGCAC--------GA-GATCATGACCAAATAGAAGGAGAGGAAGGTGTAAGGCT 191
Query 180 TGACCTTATGCTAGCAGGATATGATTCTAGTCAACCACAGCTCAATCAAGAACTCAATCT 239
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 192 TGAACTTATGCTAGCAGGATATGATTCTAGTAAACCACAGCTCAATCAAGAACTCAATCT 251
Query 240 CCTCGACTGCTTAGAGACAGGTGTAGTCACTCCGAGTTTTAACGGGTCAACTTCCACTGA 299
|||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||
Sbjct 252 CCTCAACTGCTTAGAGGCAGGTGTAGTCACTCCAAGTTTTAACGGGTCAAGTTCCACTGA 311
Query 300 ACAGAAGCTCTTCTCATGCAACTACTGTCAAAGAACATTCTACAGCTCACAGGCGCTTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACAGAAGCTCTTCTCATGCAACTACTGTCAAAGAACATTCTACAGCTCACAGGCGCTTGG 371
Query 360 TGGTCACCAAAACGCCCACAAAAGAGAAAGGACTTTGGCAAAGCGAGGGCAACGGATGGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TGGTCACCAAAACGCCCACAAAAGAGAAAGGACTTTGGCAAAGCGAGGGCAACGGATGGC 431
Query 420 ATCTGCCGCAGCTTTCGGGCATCCATATGGTTTTGCTCCGGTCCCGTTCCATGGACAGTA 479
|||||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||
Sbjct 432 ATCTGCCGCAGCTTTCGGGCATCCATATAGCTTTGCTCCAGTCCCGTTCCATGGGCAGTA 491
Query 480 CAGCAACAGAACCTTGGGTATTCAGGCACACTCAATGAGTCATAAGCCAAGTTCATATAA 539
|||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||
Sbjct 492 CAGCAACAGATCCTTGGGTATTCAGGCGCACTCAATGAGTCACAAGCTAAGTTCATATAA 551
Query 540 CGT-TTACGGTGGTGAGTATGGTCAGATCAACTGGTCAAGGATACCACTAGTTCAGCAAC 598
||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 552 CGTGTTT-GGTGGTGAGTATGGTCAGATCAATTGGTCAAGGATACCACTAGTTCAGCAAC 610
Query 599 CAGCAATAGCAAAACTAACTTCAACAGAGAATCATTATAATCATCATCAGATGATGATTG 658
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CAGCCATAGGAAAACTAACTTCAACAGAGAATCATTATAATCATCATCAGATGATGATTG 670
Query 659 CTCCACCGTTGACTTCCACATGTGAAAACATCGGTAGGTTCGATGTAGGAAGGATTCCAG 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 671 CTCCACCGTTGACTTCCACATGTGAAAACATCGGTAGGTTCGATGTTGGAAGGATTCCAG 730
Query 719 TAGAGTTT-CCAACTTCTGAACTATGGCAGAGAGGCGAGGAATTGTTGAAGCCAGCTGAA 777
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TAGA-TTTACCAACTTCCGAACTATGGCAGAGAGGCGAGGAATTGTTGAAGCCAGCTGAA 789
Query 778 GAAGAGAAGCAGAAGAACCTTGACTTGTCCCTTAAACTTTGA 819
|||||| ||||||||||||||||||||||||||||||| |||
Sbjct 790 GAAGAGCAGCAGAAGAACCTTGACTTGTCCCTTAAACTCTGA 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5