BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10980.1
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487928 jgi|Araly1|487928|fgenesh2_kg.6__1062__AT5G10980.1 832 0.0
Ahg489722 jgi|Araly1|489722|fgenesh2_kg.6__2856__AT1G13370.1 448 4e-125
Ahg480202 jgi|Araly1|480202|fgenesh2_kg.3__2903__AT1G13370.1 409 2e-113
Ahg316489 jgi|Araly1|316489|fgenesh1_pm.C_scaffold_2001522 359 2e-98
Ahg940507 jgi|Araly1|940507|scaffold_601051.1 351 3e-96
> Ahg487928 jgi|Araly1|487928|fgenesh2_kg.6__1062__AT5G10980.1
Length=653
Score = 832 bits (450), Expect = 0.0
Identities = 522/555 (94%), Gaps = 11/555 (2%)
Strand=Plus/Plus
Query 24 ACAATCATCAAGAAAACAAAACTCGCTTCCTGATAATCAAATCAAAAGCTTCTCTATCAA 83
|||||||||||||||||||||||||||| |||||| |||||| || || || ||||
Sbjct 1 ACAATCATCAAGAAAACAAAACTCGCTTTTTGATAAACAAATC-GAA---TC-CTCTCAA 55
Query 84 GCTTATCGAAAAGTCACATCTTTTGGAAGAA-ACAATGGCTCGTACCAAGCAAACCGCTA 142
|||| ||||||||||||||| | | | |||| ||||||||||||||||||||||||||||
Sbjct 56 GCTTTTCGAAAAGTCACATC-TCT-G-AGAAGACAATGGCTCGTACCAAGCAAACCGCTA 112
Query 143 GGAAATCCACCGGAGGTAAAGCTCCCAGGAAGCAGCTTGCCACCAAGGCGGCGAGGAAAT 202
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 113 GGAAATCCACCGGAGGTAAAGCTCCCAGGAAGCAGCTCGCCACCAAGGCGGCGAGGAAAT 172
Query 203 CAGCACCAACCACCGGAGGAGTCAAGAAGCCTCACCGTTACCGTCCAGGAACCGTCGCTC 262
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 173 CTGCACCGACCACCGGAGGAGTCAAGAAGCCTCACCGTTACCGTCCCGGAACCGTGGCTC 232
Query 263 TTCGTGAGATTCGTAAGTACCAGAAGAGTACTGAATTGTTGATCCGCAAGCTTCCCTTCC 322
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 233 TTCGTGAGATTCGTAAATACCAGAAGAGCACTGAATTATTGATCCGCAAGCTTCCCTTCC 292
Query 323 AGCGTCTCGTTCGGGAAATAGCTCAGGACTTCAAGACGGATCTGAGGTTTCAGAGTCACG 382
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGCGTCTCGTTCGTGAAATCGCTCAGGACTTCAAGACGGATCTGAGGTTTCAGAGTCACG 352
Query 383 CGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATACCTAGTTGGACTTTTCGAGGATACTA 442
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 353 CGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATACCTTGTTGGACTTTTCGAGGATACCA 412
Query 443 ATCTCTGCGCTATTCACGCCAAGAGGGTTACGATCATGCCTAAGGACATTCAATTGGCTA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATCTCTGCGCTATTCACGCCAAGAGGGTTACGATCATGCCTAAGGACATTCAATTGGCTA 472
Query 503 GAAGAATTCGTGGAGAACGTGCTTAAGCTTTTATTTACCTAATTCAAGTTTAGATTTTTA 562
|||| ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 473 GAAGGATTCGTGGAGAACGTGCTTAAGCTTTT-TTTACCTAATTCGA-TTTAGATTTTTA 530
Query 563 CGATGATGTATTAGT 577
|| ||||||||||||
Sbjct 531 CGTTGATGTATTAGT 545
> Ahg489722 jgi|Araly1|489722|fgenesh2_kg.6__2856__AT1G13370.1
Length=533
Score = 448 bits (242), Expect = 4e-125
Identities = 362/421 (86%), Gaps = 4/421 (1%)
Strand=Plus/Plus
Query 109 GAAGAAACAATGGCTCGTACCAAGCAAACCGCTAGGAAATCCAC-CGGAGGTAAAGCTCC 167
|||||| | ||||||||||| ||||||||||| || |||| ||| |||||| ||||||||
Sbjct 21 GAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAAT-CACACGGAGGAAAAGCTCC 79
Query 168 CAGGAAGCAGCTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAA 227
||||||||||| || |||||||||||||||||||| || || || ||||||||||||||
Sbjct 80 GAGGAAGCAGCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACCGGAGGAGTCAA 139
Query 228 GAAGCCTCACCGTTACCGTCCAGGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAA 287
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 140 GAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAA 199
Query 288 GAGTACTGAATTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCA 347
||| || || |||||||||||||| ||||| || |||||||| ||||| |||||||| ||
Sbjct 200 GAGCACAGAGTTGTTGATCCGCAAACTTCCATTTCAGCGTCTTGTTCGTGAAATAGCCCA 259
Query 348 GGACTTCAAGACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGC 407
|| ||||||||||||||||| |||||||| || || ||||||||||||||||| || ||
Sbjct 260 AGATTTCAAGACGGATCTGAGATTTCAGAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGC 319
Query 408 TGAGGCATACCTAGTTGGACT-TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGA 466
||| ||||| | || || | ||| || || || ||||| || || ||||| || ||||
Sbjct 320 TGAAGCATATTTGGTGGGTTTGTTT-GAAGACACAAATCTTTGTGCCATTCATGCAAAGA 378
Query 467 GGGTTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGAATTCGTGGAGAACGTGCTT 526
|||||||||| |||||||| || |||||||||| ||||| ||||||||||| |||||||
Sbjct 379 GGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 438
Query 527 A 527
|
Sbjct 439 A 439
> Ahg480202 jgi|Araly1|480202|fgenesh2_kg.3__2903__AT1G13370.1
Length=501
Score = 409 bits (221), Expect = 2e-113
Identities = 355/421 (84%), Gaps = 4/421 (1%)
Strand=Plus/Plus
Query 109 GAAGAAACAATGGCTCGTACCAAGCAAACCGCTAGGAAATCCAC-CGGAGGTAAAGCTCC 167
|||||| | ||||||||||| ||||||||||| || |||| ||| |||||| ||||||||
Sbjct 6 GAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAAT-CACACGGAGGAAAAGCTCC 64
Query 168 CAGGAAGCAGCTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAA 227
|||||||| ||||| || ||||| ||||||||||| || || | ||||| ||||||||
Sbjct 65 AAGGAAGCAACTTGCTACTAAGGCTGCGAGGAAATCTGCGCCGAGTACCGGTGGAGTCAA 124
Query 228 GAAGCCTCACCGTTACCGTCCAGGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAA 287
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 125 GAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAA 184
Query 288 GAGTACTGAATTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCA 347
||| || || ||||| ||||| || ||||| || |||||||| ||||| ||||| || ||
Sbjct 185 GAGCACAGAGTTGTTAATCCGTAAACTTCCATTTCAGCGTCTTGTTCGTGAAATCGCCCA 244
Query 348 GGACTTCAAGACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGC 407
|| ||||||||||||||||| || ||||| ||||| |||||||| |||||||| || ||
Sbjct 245 AGATTTCAAGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAAGCTGC 304
Query 408 TGAGGCATACCTAGTTGGACT-TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGA 466
|||||||| | || || | ||| || ||||| ||||| || || ||||| || ||||
Sbjct 305 GGAGGCATATTTGGTGGGTTTGTTT-GAAGATACAAATCTGTGTGCCATTCATGCAAAGA 363
Query 467 GGGTTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGAATTCGTGGAGAACGTGCTT 526
|||||||||| |||||||| || |||||||||| ||||| ||||||||||| |||||||
Sbjct 364 GGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 423
Query 527 A 527
|
Sbjct 424 A 424
> Ahg316489 jgi|Araly1|316489|fgenesh1_pm.C_scaffold_2001522
Length=711
Score = 359 bits (194), Expect = 2e-98
Identities = 312/370 (84%), Gaps = 4/370 (1%)
Strand=Plus/Plus
Query 118 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCAC-CGGAGGTAAAGCTCCCAGGAAGCA 176
||||||||||| ||||||||||| || |||| ||| |||||| |||||||| |||||||
Sbjct 1 ATGGCTCGTACGAAGCAAACCGCGAGAAAAT-CACACGGAGGAAAAGCTCCGAGGAAGCT 59
Query 177 GCTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAAGAAGCCTCA 236
||| || |||||||||||||||||||| || || || || ||||||||||||||||||||
Sbjct 60 GCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACAGGAGGAGTCAAGAAGCCTCA 119
Query 237 CCGTTACCGTCCAGGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAAGAGTACTGA 296
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 120 CCGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGA 179
Query 297 ATTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCAGGACTTCAA 356
||||||||||| || |||||||| || ||||| ||||| ||||| || || || |||||
Sbjct 180 GTTGTTGATCCGTAAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAA 239
Query 357 GACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATA 416
|||||||||||| || || || ||||| || || || |||||||| || || ||||||||
Sbjct 240 GACGGATCTGAGATTCCAAAGCCACGCTGTCTTGGCACTTCAAGAAGCTGCGGAGGCATA 299
Query 417 CCTAGTTGGACT-TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGAGGGTTACGA 475
| || || | ||| || || || ||||| || || ||||| || |||||||||||||
Sbjct 300 TTTGGTGGGTTTGTTT-GAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 358
Query 476 TCATGCCTAA 485
| ||||||||
Sbjct 359 TTATGCCTAA 368
Score = 337 bits (182), Expect = 8e-92
Identities = 287/339 (85%), Gaps = 2/339 (1%)
Strand=Plus/Plus
Query 190 GCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAAGAAGCCTCACCGTTACCGTCCA 249
|||||||||||||| || || || ||||| |||||||||||||||||||||||||||||
Sbjct 373 GCGGCGAGGAAATCTGCGCCGACTACCGGTGGAGTCAAGAAGCCTCACCGTTACCGTCCC 432
Query 250 GGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAAGAGTACTGAATTGTTGATCCGC 309
||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||
Sbjct 433 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGT 492
Query 310 AAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCAGGACTTCAAGACGGATCTGAGG 369
|| |||||||| || ||||| ||||| ||||| || || || |||||||||||||||||
Sbjct 493 AAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAGACGGATCTGAGA 552
Query 370 TTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATACCTAGTTGGACT- 428
|| || || ||||| ||||| || |||||||| || || |||||||| | || || |
Sbjct 553 TTCCAAAGCCACGCTGTGTTGGCACTTCAAGAAGCTGCGGAGGCATATTTGGTGGGTTTG 612
Query 429 TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGAGGGTTACGATCATGCCTAAGGA 488
||| || || || ||||| || || ||||| || |||||||||||||| |||||||| ||
Sbjct 613 TTT-GAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATTATGCCTAAAGA 671
Query 489 CATTCAATTGGCTAGAAGAATTCGTGGAGAACGTGCTTA 527
|||||||||| ||||||||||||||||| ||||||||
Sbjct 672 TGTTCAATTGGCAAGAAGAATTCGTGGAGAGCGTGCTTA 710
> Ahg940507 jgi|Araly1|940507|scaffold_601051.1
Length=452
Score = 351 bits (190), Expect = 3e-96
Identities = 352/428 (82%), Gaps = 20/428 (5%)
Strand=Plus/Plus
Query 118 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGTAAAGCTCCCAGGAAGCAG 177
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 21 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGCAAAGCACCGAGGAAGCAG 80
Query 178 CTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAAGAAGCCTCAC 237
|| || || ||||||||||||||||| || || ||||||||||||| |||||||| ||
Sbjct 81 CTGGCAACAAAGGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCAT 140
Query 238 CG-TTACCGTCCAGGAACCGTCGCTCTTC-GTGAGATTC-GTAAGTACCAGAAGAGTACT 294
| || |||||||||||| || || ||| | ||||| | | |||||||||||||| ||
Sbjct 141 AGATT-CCGTCCAGGAACTGTTGC-CTTGAGAGAGAT-CAGGAAGTACCAGAAGAGCACA 197
Query 295 GAA-TTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCAGGACTT 353
|| || | |||||| |||||||| ||||||||||| ||||| || || |||||||| ||
Sbjct 198 GAGCTTCT-GATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATTGCTCAGGATTT 256
Query 354 CAAGACGGATCTGAGGTTTCAGAGTCAC-GCGGT-GTTAGCTCTT-CAAGAGGCGGCTGA 410
|||||||||||||||||| ||||| || || || | |||| || ||||||||||||||
Sbjct 257 CAAGACGGATCTGAGGTTCCAGAG-CAGTGCCGTCGC-AGCT-TTACAAGAGGCGGCTGA 313
Query 411 GGCATACCTAGTTGGACT-TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGAGGG 469
||| ||||| ||||| | ||| || || ||||| || ||||| ||||||||||||||||
Sbjct 314 GGCTTACCTTGTTGGTTTGTTT-GAAGACACTAACCTTTGCGCGATTCACGCCAAGAGGG 372
Query 470 TTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGAATTC-GTGGAGAACGTGCTT-A 527
| || |||||||||||||| || || | || || || || | | |||||| | |||| |
Sbjct 373 TCACTATCATGCCTAAGGATATCCAGCTCGCAAGGAGGAT-CAGAGGAGAAAGAGCTTGA 431
Query 528 AG-CTTTT 534
|| |||||
Sbjct 432 AGACTTTT 439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26266689813
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5