BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10990.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940569 jgi|Araly1|940569|scaffold_601113.1 710 0.0
Ahg926945 jgi|Araly1|926945|scaffold_202506.1 350 1e-95
> Ahg940569 jgi|Araly1|940569|scaffold_601113.1
Length=487
Score = 710 bits (384), Expect = 0.0
Identities = 449/481 (93%), Gaps = 2/481 (0%)
Strand=Plus/Plus
Query 33 GTAATCGG-AAAAAATGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGACACATTGTGA 91
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 7 GTAATCGGAAAAAAATGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGGCACATTGTGA 66
Query 92 AGCTAAGGCAAATGCTTCGGCAATGGCGTAACAAGGCGCGAATGTCGTCTGTCAGACGAT 151
|||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 67 AGCTGAGGCAAATGCTCCGGCAATGGCGGAACAAGGCGCGGATGTCTTCTGTCAGACGAT 126
Query 152 CTGTGCCGTCAGATGTACCGTCAGGACACGTGGCGGTTTACGTTGGGAGAAGTTGCAGGA 211
|||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 127 CTGTGCCGTCGGATGTGCCGTCAGGACACGTGGCGGTCTACGTTGGGAGCAGTTGCAGGA 186
Query 212 GATTCGTGGTGCTTGCGACGTATCTGAACCACCCCATTCTTATGAATCTCTTGGTTAAGG 271
|||| ||||||| ||||||||||||||||| || || || |||||||||||||||||||
Sbjct 187 GATTTGTGGTGCGCGCGACGTATCTGAACCATCCAATCCTGATGAATCTCTTGGTTAAGG 246
Query 272 CTGAAGAGGAGTTCGGTTTTGCTAACCAGGGACCGTTGGTTATCCCGTGTGAAGAATCGG 331
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 247 CTGAAGAGGAGTTCGGTTTTACTAACCAGGGACCGTTGGTTATCCCATGTGAAGAATCGG 306
Query 332 TTTTCGAGGAATCGATTCGGTTTATAACTCGGTCAAGTCGGTTTACTTGTACCGATGATT 391
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TTTTTGAGGAATCGATTCGGTTTATAACTCGGTCAAGTCGGTTTACTTGTACCGATGATT 366
Query 392 TAAAGAAGAATCGCCACGGTGGTATTAGGAGCAAGCTGGATCTATTGATGGAATCTCGGC 451
||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 367 TAAAGAAGAATTGCCACGATGGTATTATAAGCAAGCTGGATCTTTTGATGGAATCTCGGC 426
Query 452 CGTTGCTTCACGGCGTCTCCGAGAAGGCTATCATCTGGTGACCGGAGAGACAATCGTCAT 511
||||||||||||||||||| ||||||||||||||||||||||| || ||| ||| | |||
Sbjct 427 CGTTGCTTCACGGCGTCTCTGAGAAGGCTATCATCTGGTGACCAGAAAGAAAATTG-CAT 485
Query 512 T 512
|
Sbjct 486 T 486
> Ahg926945 jgi|Araly1|926945|scaffold_202506.1
Length=506
Score = 350 bits (189), Expect = 1e-95
Identities = 373/457 (82%), Gaps = 31/457 (7%)
Strand=Plus/Plus
Query 38 CGGAAAAAATGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGACACATTGTGAAGCTAA 97
|||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||| |
Sbjct 13 CGGAAAAAATGGCTGGAGGTCTCGGAAAATGCAGCAAGATCCGTCACATTGTGAGGCTGA 72
Query 98 GGCAAATGCTTCGGCAATGGCG-TAACAAGGCGCGAATG---TCGTCTGTCAGACGATC- 152
| || |||||||| | ||||| | ||| ||| | ||| || ||| |||| || ||
Sbjct 73 GACAGATGCTTCGACGGTGGCGCGATCAA-GCGAGGATGTCTTCTTCTTTCAGCCG-TCG 130
Query 153 TGTGCCGTCAGATGTACCGTCAGGACACGTGGCGGTTTACGTTGGGAGAAGTTGCAGGAG 212
||| ||||| ||||| |||||||||||||||||| | ||||| || || |||||||||||
Sbjct 131 TGTACCGTCGGATGTGCCGTCAGGACACGTGGCGATCTACGTAGGAAGCAGTTGCAGGAG 190
Query 213 ATTCGTGGTGCTTGCGACGTATCTGAACCACCCCATTCTTA-TGAATCTCTTGGTT-AAG 270
||| ||||||| ||||||||||||||||| ||| || || |||||| |||||| ||
Sbjct 191 ATTTGTGGTGCGCGCGACGTATCTGAACCA-TCCAATCCTACGGAATCTGTTGGTTCAA- 248
Query 271 GCTGAAGAGGAGTTCGGTTTTGCTAACCAGGGACCGTTGGTTATCCCGTGTGAAGAATCG 330
||||| || ||||||||||| | |||||| || |||||||||||||| ||||||||||||
Sbjct 249 GCTGAGGAAGAGTTCGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCG 308
Query 331 GTTTTCGAGGAATCGATTCGGTTTAT-----------A----ACTCGGTCAAGTCGGTTT 375
|||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 309 GTTTTCGAGGAATCGATTCGGTTTATCTCCCGGTCTGATTCGACTCGGTCAAGACGGTTT 368
Query 376 ACTTGTACCGATGATTTAAAGAAGAATCGCCACGGTGGT---ATT-AGGAGCAAGCTGGA 431
|||||| |||||||||| ||||||| ||||| |||||| | | || |||||| | ||
Sbjct 369 ACTTGTCCCGATGATTTTCAGAAGAACCGCCA-GGTGGTGGGAATCAGAAGCAAGATAGA 427
Query 432 TCTATTGATGGAATCTCGGCCGTTGCTTCACGGCGTC 468
||||| ||| |||||||| ||||| ||||||||||||
Sbjct 428 TCTATGGATCGAATCTCGACCGTTACTTCACGGCGTC 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5