BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11000.1
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940570 jgi|Araly1|940570|scaffold_601114.1 1905 0.0
Ahg336890 jgi|Araly1|336890|fgenesh1_pg.C_scaffold_1003455 135 6e-31
Ahg357626 jgi|Araly1|357626|fgenesh1_pg.C_scaffold_8001413 130 3e-29
> Ahg940570 jgi|Araly1|940570|scaffold_601114.1
Length=1207
Score = 1905 bits (1031), Expect = 0.0
Identities = 1152/1211 (95%), Gaps = 5/1211 (0%)
Strand=Plus/Plus
Query 71 aaaaaaaaGTAAACACGAAAATGTCTCCGTCTTGGCTCCGCCCAACCGCCGATCACAATC 130
||||||||| |||||| ||||||||||| ||||||||||| || ||||| ||||| ||||
Sbjct 1 AAAAAAAAGGAAACACAAAAATGTCTCCTTCTTGGCTCCGTCCTACCGCTGATCAAAATC 60
Query 131 ATCCTCCACCGCAACCGCCGTCGCAATCACCGTCCCCTCTATCTTCCGGTGATCCGAATC 190
||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 ATCCTCCGCCGCCACCGCCGTCGCAATCACCGTCTCCTCTATCTTCCGGTGATCCGAATC 120
Query 191 TCACAACATGTCTCTACCAAACAGATCACGGCGTCTTCTATCTAACATGGTCCCGAACTT 250
|||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TCACTACTTGCCTCTACCAAACAGATCACGGCGTCTTCTATCTAACATGGTCTCGAACTT 180
Query 251 TCTTAGGAGGCCACTCTGTGAATCTCTTCCTCCATTCACAAGATTACTACAACCActctt 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TCTTAGGAGGCCACTCTGTGAATCTCTTCCTCCACTCACAAGATTACTACAACCACTCTT 240
Query 311 cgccactctctttctcctccgctgatctctctctttcctccgccgtctctttccatctcA 370
| |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 241 CACCACTCTCTTTCTCCTCCGCCGATCTCTCGCTCTCCTCCGCCGTCTCTTTCCATCTCA 300
Query 371 ACTTAAACACATTAGCTTTCTGGAAAAAACGTGGATCCAGATTCGTTTCTCCCAAAATCC 430
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 301 ACTTAAACACATTAGCTTTCTGGAAAAAACGCGGATCCAGATTCGTTTCTCCTAAAATCC 360
Query 431 AAGTCTTCTGGGACTTAAGCAAAGCCAAATTCGACTCTGGATCCGAACCTAGATCCGGAT 490
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGTCTTCTGGGACTTAACCAAAGCCAAATTCGACTCTGGATCCGAACCTAGATCCGGAT 420
Query 491 TCTACATCGCTGTAGTTGTTGACGGAGAGATGGGACTATTAGTCGGAGATTCAGTCAAAG 550
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 421 TCTACATCGCTGTAGTTGTTGACGGAGAGATGGGACTATTAGTCGGTGATTCCGTCAAAG 480
Query 551 AAGCTTACGCTCGTGCTAAATCGGCGAAACCTCCGACGAATCCGCAAGCTCTTCTGTTGA 610
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 AAGCTTACGCTCGTGCTAAATCGGCGAAACCTCCGACGAATCCACAAGCTCTTCTGTTGA 540
Query 611 GGAAAGAGCACGTGTTTGGAGCTAGGGTTTTCACAACGAAAGCGAGATTTGGAGGGAAGA 670
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 GGAAAGAGCATGTGTTTGGAGCTAGGGTTTTCACAACGAAAGCTAGATTTGGAGGGAAGA 600
Query 671 ACAGAGAGATTTCTATTGATTGTCGTGTTGATGAAGACGCTAAGCTCTGTTTTAGCGTTG 730
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 ACAGAGAGATTTCTATTGATTGTCGTGTTGATGAAGACGCTAAGCTCTATTTTAGCGTTG 660
Query 731 ATTCGAAACAGGTTCTGCAGATCAAGA-GACTTAGATGGAAATTTAGAGGAAATGAGAAA 789
|||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 661 ATTCGAAACAGGTTTTGCAGATCAA-ACGACTTCGATGGAAATTTAGAGGAAATGAGAAA 719
Query 790 GTTGAAATCGATGGAGTTCATGTTCAGATCTCTTGGGATGTATACAATTGGTTGTTTCAG 849
|||||||| ||||| ||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 720 GTTGAAATTGATGGTGTTCAAGTTCAAATCTCTTGGGATGTATACAATTGGCTGTTTCAG 779
Query 850 AGTAAAAGTTCCGGTGACGGCGGAGGAGGAGGAGGACACGCCGTGTTTATGTTTAGATTC 909
||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 780 AGTAAAAACTCCGGTGACGGCGGAGGAGGAGGAGGACACGCGGTGTTTATGTTTCGATTC 839
Query 910 GAGAGTGATCCAGAAGCAGAGGAGGTTTGTGAAACGAAGAGGAAAGAAGAAGAAGATGAG 969
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGAGTGATCCAGAAGCAGAAGAGGTTTGTGAAACGAAGAGGAAAGAAGAAGAAGATGAG 899
Query 970 AAAAATCGAAACGGTATCGTTTTATGGAAGCCGAAGAAGCAATGTGGAAATAGTTTTGGG 1029
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 900 AAAAACCGAAACGGTATCGTTTTATGGAAGCCGAAGCAG---TGTGGAAATAGTTTTGGG 956
Query 1030 ATTAAAGGGATTGTTGAGTGGAGGAAGATGAGGAAGAGATTTGTTAAGAGTAAGAGAAGT 1089
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATTAAAGGAATTGTTGAGTGGAGGAAGATGAGGAAGAGATTTGTTAAGAGTAAGAGAAGT 1016
Query 1090 TCTTCGTCGTCTTCGATTTCGATGTCGTCGGCTTCTTCGGCGTGTAGCTCGTCGGTTATG 1149
|| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1017 TCGTCATCGTCGTCGATTTCGATGTCGTCGGCTTCTTCGGCGTGTAGTTCATCGGTTATG 1076
Query 1150 GAATGGGCTAGTAGTGCTGATGAGGCGGAGTACGGCGGAGGAGGTTGTTCTGGTTCCGGT 1209
|| ||||| ||||||||||||||||||||||||||||| ||||| | ||||||||| |||
Sbjct 1077 GAGTGGGCAAGTAGTGCTGATGAGGCGGAGTACGGCGGCGGAGGATCTTCTGGTTCTGGT 1136
Query 1210 TCCGGCAATGGTCTTGGATTCTCATTACTGGTTTACGCTTGGATTAAGTGAAAATATTCT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCCGGCAATGGTCTTGGATTCTCATTACTGGTTTACGCTTGGATTAAGTGAAAATATTCT 1196
Query 1270 TTTTCGAGGGA 1280
|||||||||||
Sbjct 1197 TTTTCGAGGGA 1207
> Ahg336890 jgi|Araly1|336890|fgenesh1_pg.C_scaffold_1003455
Length=606
Score = 135 bits (73), Expect = 6e-31
Identities = 90/98 (92%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 538 GATTCAGTCAAAGAAGCTTACGCTCGTGCTAAATCGGCGAAACCTCCGACGAATCCGCAA 597
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 10 GATTCAGTCAAAGAAGCTTACGCTCGTGCTAAATCGGCGAAATCTCCGACGAATCCACAA 69
Query 598 GCTCT-TCTGTTGAGGAAAGAGCACGTGTTTGGAGCTA 634
||| | | | ||||||||||| || |||||||||||||
Sbjct 70 GCTTTGTTTATTGAGGAAAGATCATGTGTTTGGAGCTA 107
> Ahg357626 jgi|Araly1|357626|fgenesh1_pg.C_scaffold_8001413
Length=477
Score = 130 bits (70), Expect = 3e-29
Identities = 89/98 (91%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 538 GATTCAGTCAAAGAAGCTTACGCTCGTGCTAAATCGGCGAAACCTCCGACGAATCCGCAA 597
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 10 GATTCAGTCAAAGAAGCTTACGCTCGTGCTAAATCGGCGAAATCGCCGACGAATCCACAA 69
Query 598 GCTCT-TCTGTTGAGGAAAGAGCACGTGTTTGGAGCTA 634
||| | | | ||||||||||| || |||||||||||||
Sbjct 70 GCTTTGTTTATTGAGGAAAGATCATGTGTTTGGAGCTA 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5