BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11010.2
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487931 jgi|Araly1|487931|fgenesh2_kg.6__1065__AT5G11010.2 2023 0.0
> Ahg487931 jgi|Araly1|487931|fgenesh2_kg.6__1065__AT5G11010.2
Length=1259
Score = 2023 bits (1095), Expect = 0.0
Identities = 1208/1262 (96%), Gaps = 9/1262 (1%)
Strand=Plus/Plus
Query 65 ATACCTTCTCCTCTGGTCGACGACTCAAAAATCGCCGGTTATAGTTTTTTCTTCCGACCG 124
|||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||
Sbjct 1 ATACCTTCTCCTCTGGTCGACGACTCCAAAATCGCCGGTTATAGTTTCTTC-TCCGA-CG 58
Query 125 TTTTCTAGTTTCGTCATTTTCCGTGTTATTTAACAAAGAAAGATAAGGTGTGGCTGCAAT 184
| ||||| ||||| || | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct 59 TCTTCTAATTTCGCCACTCTCCGTGTTATTTATCAAAGAAAGAGAAGGTGTGGCTGCAAT 118
Query 185 GTCTGAAGCAGAAAATAAATTGCCTTTCATACCAGAGGAATGGTCAAATGCAGCAAGTTC 244
||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 GTCTGAAGCAGAAAAGAAACTGCCTTTCATACCAGAGGAATGGTCGAATGCAGCAAGTTC 178
Query 245 TGTTTCCTGCAGTTCGTTGCAACCGGTTATAGCTTTGGTCTGTGGCCCTAAAAACAGTGG 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGTTTCCAGCAGTTCGTTGCAACCGGTTATAGCTTTGGTCTGTGGCCCTAAAAACAGTGG 238
Query 305 CAAAAGCACATTTTCACGCAATCTTGTTGAAGTTCTTCTCCAAAGATACAAAAGGGTTGC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CAAAAGCACATTTTCACGCAATCTTGTTGAAGTTCTTCTCCAAAGATACAAAAGGGTTGC 298
Query 365 TTATTTGGATACTGATGTTGGCCAGCCTGAATTTACTGCACCTGGTTTCCTTTCTCTCAC 424
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 TTATTTGGATACTGATGTTGGCCAGCCTGAATTTACTGCACCTGGTTTTCTTTCTCTCAC 358
Query 425 AATTGTTGATAAATCAATTCTAGAATCGGATTGGACAGTTCCATGTGTAAAGACACCAGA 484
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 TGTTGTTGATAGATCAATTCTAGAATCGGATTGGACAGTTCCATGCGTAAAGACACCAGA 418
Query 485 GAGATGCTTCTTCTATGGTGATGTTTCTTCAAAGAGGGATCCAAAGGCATATTTAAGATA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGATGCTTCTTCTATGGTGATGTTTCTTCAAAGAGGGATCCAAAGGCATATTTAAGATA 478
Query 545 TGTATATACCTTATTCGATTACTATCAGCTACACTTCTGCAAGTCTAGCGAGAACAAAAC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTATATACCTTATTCGATTACTATCAGCTACACTTCTGCAAGTCTAGCGAGAACAAAAC 538
Query 605 TGAATTGCCGCTTGTCATTAATACACCAGGATGGGTTAAAGGAATTGGCTATGAGTTATT 664
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGAACTGCCGCTTGTCATTAATACACCAGGATGGGTTAAAGGAATTGGCTATGAGTTATT 598
Query 665 GGTGGACGTGCTGAGATATGTTTCCCCTTCCCACGTTGTGAAAATTAACATCTCTGCTTA 724
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 599 GGTGGACGTACTGAGATATGTTTCTCCTTCCCACGTTGTGAAAATCAACATCTCTGCTTA 658
Query 725 CAACAAGAACCTACCAGCTGGGTTGTTCTGGTTAGACGGTAATGATGATGAGACAGCTCA 784
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAACAAGAATCTACCAGCTGGGTTGTTCTGGTTAGACGGTAATGATGATGAGACAGCTCA 718
Query 785 TTTGATAGAGATCCAATCTGCTTACCAAGACAGATATAATCAATCCATTTTAATACATAA 844
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTGATAGAGATTCAATCTGCTTACCAAGACAGATATAATCAATCCATTTTAATACATAA 778
Query 845 GGATGCTCGTTTGATGAGGGACATGCGTATAATCGCCTACTTTAGGCAATGCTTTAAAGG 904
||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||
Sbjct 779 GGATGCTCGTTTGATGAGGGACATGCGTATAATTGCATACTTCAGGCAATGCATTAAAGG 838
Query 905 AAAAGAAGTAAACACGATCAAAGAACTAACACATGAACTCGCTTCCCATATTCCTTATGA 964
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 839 AAAAGAAGTAAACACGATCAAAGAACTAACCCATGAACTCGCTTCCCACACTCCTTATGA 898
Query 965 AGTTCCAATATCGAGTTTAACAATCAACCATCTCCATTGTCAGATCCCAAGTTCTGAAGT 1024
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 AGTTCCAATATCAAGTTTAACAATCAATCATCTCCATTGTCAGATCCCAAGTTCTGAAGT 958
Query 1025 GTATTATAGTTTGAATGCTTCCATTGTTGGTTTGGGCATTAGCACCGAGGTGTTTGAGGA 1084
|| |||||||||||||||||||||||||||||||||| |||||| ||| |||||||| ||
Sbjct 959 GTTTTATAGTTTGAATGCTTCCATTGTTGGTTTGGGCGTTAGCAACGACGTGTTTGAAGA 1018
Query 1085 TTTGCCATCATGCGTAGGTCTTGGAATCGTGAGGGGTATTGACACAGAGAGAGGAATATT 1144
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTGCCATCATGTGTAGGTCTTGGAATCGTGAGGGGTATTGACACAGAGAGAGGAATATT 1078
Query 1145 ATATGTGATCACTCCAGTACCAGAAAACTTAGTTGAGAAAGTTGATCTTCTATTGCAAGG 1204
||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1079 ATACGTGATCACTCCAGTTCCAGAAAACGTAGTTGAGGAAGTTGATCTTCTATTGCAAGG 1138
Query 1205 CTATATTCAGTTACCTACTTGCCTCTTAGAGGTGAAGGATTACAGGTCG-CCATATTTAT 1263
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1139 CTATATTCAGTTACCTACTTGCCTCTTAGAGGTGAAGGATTACAGGT-GTCCATATTTAT 1197
Query 1264 CTGCCAACGTCTTAGCTTCCACCT-GATTTC-TT-TT--AAGACATTTTTGCTCAGTTCT 1318
|||||||||||||||||||||||| ||||| || || ||||||||||||||||||| |
Sbjct 1198 CTGCCAACGTCTTAGCTTCCACCTAGATTTTGTTCTTGGAAGACATTTTTGCTCAGTTTT 1257
Query 1319 TC 1320
||
Sbjct 1258 TC 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5