BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11030.2
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893017 jgi|Araly1|893017|Al_scaffold_0006_1013 2724 0.0
> Ahg893017 jgi|Araly1|893017|Al_scaffold_0006_1013
Length=1779
Score = 2724 bits (1475), Expect = 0.0
Identities = 1676/1773 (95%), Gaps = 14/1773 (1%)
Strand=Plus/Plus
Query 101 CTTCTCCTTCGCGTCGTGTACGAGAACTTTTAGCTTTGTGTTTCAG-----TTCAGT-TG 154
|||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 11 CTTCTCCTTCACGTCGTGTACGAGAACTTCTAGCTTTGTGTTTCAGTTTTTTTCAGTCAG 70
Query 155 AAGAAGCCGGAGGATTTCAAGACTTTGAGAGTTTTGTGACAGAACTTGTCAGCTGTTTGG 214
||||| |||||||||| ||| || ||||| || |||||||||||||||| |||||||
Sbjct 71 TTGAAGCTGGAGGATTTCGAGAGTTGGAGAGCTTAGTGACAGAACTTGTCAACTGTTTGA 130
Query 215 ATTCTTTGTATGAGAACGTAGCTTTGGATGCTAACAATGAACTGGAGAACGATGTTATTG 274
||||||||||||||||||||| |||| |||| | | ||||||||||||| |||||||||
Sbjct 131 ATTCTTTGTATGAGAACGTAGTTTTGAATGCCAGCGATGAACTGGAGAATGATGTTATT- 189
Query 275 AAGAAGTATTAGATGAAATTTTGAAAGTTTTATCATCTCCTCAAATGGATCAGGATGTTA 334
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 190 --GAAGTATTAGATGAAATTTTGAAAGTTTTGTCATCTCCTCAAGTGGATCAGGATGTTA 247
Query 335 TAGATGCACTGTCATTTCACTTGCCAAAAGTAACTTCCAAGTTTGCAGACATATCAAGCA 394
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 248 TTGATGCACTGTCATTTCACTTGCCAAAAGTAACTTCCAAGTTTGCAGACCTATCAAGCA 307
Query 395 GATGTTTACAGTTAGTTGAGGAAATCGTTGATCGGTTTGTGGAAGCATGCAATCCACGGG 454
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 308 GATGTTTACAGTTAGTTGAGGAAATCGTTGATCGATTTGTGGAAGCATGCAATCCACGGG 367
Query 455 ATATGCTTTCAATTCTTTGTGAGGCACTCGATGCTGCACGGTGCTATCATTCAGCCTCCA 514
| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 368 ACATGCTTTCAATTCTTTGTGAGGCACTCGATGCTGCACGGTGCTCTCTTTCACCCTCCA 427
Query 515 CTTGTTCTACTCCTTTATTGCATGGGCTCTCTAAAGTATTTATTTTGATCCAGAGGCGTC 574
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 428 GTTGTTCTACTCCTTTATTACATGGGCTCTCTAAAGTATTTATTTCGATTCAGAGGCGTC 487
Query 575 ACTACGAGCAATT-AAAGGTTGCAGTTCCAATTGTCCTGAACGTTTTGAAGGACATTTCA 633
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ACTACGAGCAATTGAAA-GTTGCAGTTCCAATTGTCCTGAACGTTTTGAAGGACATTTCA 546
Query 634 TTGGAAACAGACGTGCAAGTTGAAGATTTATTTGATAAGGCTCTAGGCATTGCCTCTTCA 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTGGAAACAGACGTGCAAGTTGAAGATTTATTTGATAAGGCTCTAGGCATTGCCTCTTCA 606
Query 694 ATTCGAGACGTTTCTTCAAAACTGAATAACGAAGAAGAAGCAAAAGTCCGTTGTCTACTT 753
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 607 ATTCGAGAAGTTTCTTCAAAACTGAATAACGAAGAAGAAGCAAAAGTCCGTTGTCTGCTT 666
Query 754 TGTCTCTATGTGATACAGATAACGGCTATTATTTCAGTTAGCATCAGAGACAAAGCGGCC 813
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 667 GGTCTCTATGTGATACAGATAACGGCTATTCTTTCAGTTAGCATCAGAGACAAAGCGGCC 726
Query 814 TCTTGTATTCCTCTGGTGATTCAGTTAGAACCGTTCTTGACATCCTGTGGTTTAACACAT 873
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 727 TCTTGTATTCCTCTGGTGATTCAGTTAGAACCTTTCTTGACATACTGTGGTTTAACACAT 786
Query 874 CTTGGTTTAATCACGGGGAATGACACTGAAAAATTAATGAGCACGGTTGCTGGAGATGAT 933
||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||
Sbjct 787 CTTGGTTTAATCACGGGAAACGACACTGAAAAATTAATGAGCACAGTTGCTATAGATGAT 846
Query 934 GATGA-G-TTTAT-CACCTCTTTCCCTGACATCAGCTTGGGTGCATCGCTTTTATTCATC 990
||||| | ||| |||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 847 GATGATGATTTCGGCACCTCTTTCCCTGACATCAACTTGGGTGCGTCGCTTTTACTCATC 906
Query 991 TGTGCAAAGATCTCCCATGAGGTTGCAGAGGCGGCTAATGCGGTTTTAGGAAGTGTTGTT 1050
|| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 907 TGGGCAAAGATCTCACATGAGGTTGCAGAGGCTGCTAATGCGGCTTTAGGAAGTGATGTA 966
Query 1051 GATGAGCTTCAAAACAATCCAGTGAAAAGGTGGCAAGCTTATGGGATGTTGAAATATATA 1110
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GATGAGCTTCAAAGCAATCCAGTGAAAAGGTGGCAAGCTTATGGGATGTTGAAATATATA 1026
Query 1111 CTTTCCTCTGGAGATCTGCTCTGGGAATTCAAAAGACATGCTATCGAGTTCTTGCTTGAC 1170
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CTTTCCTCTGTAGATCTGCTCTGGGAATTCAAAAGACATGCTATCGAGTTCTTGCTTGAC 1086
Query 1171 ATAACAAAAGGAGTTACTTCATCTCAATGCAATGATGAGCAAATAGATTGTTCGGACTAC 1230
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1087 ATAACAGAAGGAGTTACTTCATCTCAATGCAATGATGAGCAAATAGATTGTTCGCACTAC 1146
Query 1231 ACGCCTGGCATCTACGCTACTTTACAGGCTGTTACATTACTGATCATGTATGCGCCAGAC 1290
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1147 ACGCCTGGCATCTACGCTGCTTTACAGGCTGTTACATTAGTGATCATGTATGCCCCAGAC 1206
Query 1291 GCAGATCTGAGGAAAAAGACATTTGAGGCACTGAAGAGGGTTCTTTCTGATATCCCAGCT 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1207 GCAGATCTGAGGAAAAAGACATTTGAGGCACTGAAGAGGGTTCTTTCTGATATCGCAGCT 1266
Query 1351 CCTCATAGGTTTGACGTTTTAAGAGCCCTTGTCACAAATTCCCGGTCTCCTTCAATGACA 1410
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 CCTCATAGGTTTGATGTTTTAAGAGCCCTTGTCACAAATTCCCGGTCTCCTTCAATGACA 1326
Query 1411 GCAATCCTTCTGGGTCTAGTTAAAGACAGCATGAGCAAAAGCAGTTTGCAAGATACAGAT 1470
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1327 GCAATCCTTCTGGGTCTAGTTAAAGACAGCATGAGCGAAAGCAGTTTGCAAGCTACAGAT 1386
Query 1471 TGTGCGGCTGTTGATACGCATGTTATTGAGCTAGTGGAGTTGGTCTTAAGGCCTCCACAG 1530
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1387 TGTGCGACTACTGATACGCATGTTATTGAGCTAGTGGAGTTGGTCTTAAGGCCTCCAGAG 1446
Query 1531 GGAGGTCCTCCACTCCTTCCGGACCAGAGTGATGCGATCCTGGCGGCACTTAACCTCTAC 1590
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1447 GGAGGTCCTCCACTCCTTCCGGACCAGAGTGATGCGGTCCTGGCGGCACTTAACCTCTAC 1506
Query 1591 AGGTTTGCACTGTTATTTGAATCGAGAGAATGTGAAGCAGGTAAAGAGAGAAGCAAAGTC 1650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 AGGTTTGCACTGTTATTTGAATCGAGAGAATGTGAAGCAGGTAAAGAGAGAAGCAAAGTA 1566
Query 1651 GGCAGTGATATTTTGTCAAAGAAGAATCTGGAGAAAGCGTATAAGGAATGGCTTCTGCCT 1710
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1567 GGCAGTGAAATTTTGTCAAAGAAGAATCTGGAGAAAGCGTATAAGGAATGGCTTCTTCCT 1626
Query 1711 CTTCGAACTCTTGTGAGCTGCAGCATCGCTGAGAACCTCAAGGAGGATCATGGCCAAGAA 1770
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1627 CTTCGAACTCTTATGAGCTGCAGCATCGCTGAGAACCCCAAGGAGGATCATGGCCAAGAA 1686
Query 1771 TCTTCACTCGACGATGTAGGGCTTCTGAACCCAATTGAATTGGTTCTATATCGATGCATC 1830
||||||||| ||||||| | ||||||||| |||||||||| |||||||||||||| |||
Sbjct 1687 CCTTCACTCGGCGATGTATGCCTTCTGAACACAATTGAATTTGTTCTATATCGATGTATC 1746
Query 1831 GAGCTCGTGGAAGAAAAGTTGAAAAGTCATTAG 1863
|||||||||||||||| ||||||||||||||||
Sbjct 1747 GAGCTCGTGGAAGAAAGGTTGAAAAGTCATTAG 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76066219265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5