BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11050.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487937 jgi|Araly1|487937|fgenesh2_kg.6__1071__AT5G11050.1 2098 0.0
Ahg479983 jgi|Araly1|479983|fgenesh2_kg.3__2684__AT5G58850.1 654 0.0
Ahg497373 jgi|Araly1|497373|fgenesh2_kg.277__1__AT5G58850.1 483 2e-135
Ahg484568 jgi|Araly1|484568|fgenesh2_kg.5__560__AT3G27785.1 128 1e-28
> Ahg487937 jgi|Araly1|487937|fgenesh2_kg.6__1071__AT5G11050.1
Length=1523
Score = 2098 bits (1136), Expect = 0.0
Identities = 1418/1546 (92%), Gaps = 52/1546 (3%)
Strand=Plus/Plus
Query 1 GCTCTCGTCTCACCTCCCCATTCTACACTAAACTTTTTCTCCTTTTTCTTCCATGGAAGA 60
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 GCTCTCGGCTCACCTCCCCATTCTACACTAAACTTTTTCTCCTTTTTCCTCCATGGAAGA 60
Query 61 ACAGAAAATTCAAGAGAAGAGCCTCGCTCACGGCGCTGCACCACCGTTGACGGCGGTTGA 120
||||| ||| |||||||||||| |||| |||||||||||||| |||||||| ||||||||
Sbjct 61 ACAGAGAATACAAGAGAAGAGCTTCGCCCACGGCGCTGCACCGCCGTTGACAGCGGTTGA 120
Query 121 GAGATTCTTGAACGGCCAAAAGAACGA-AGCCTTGTGCTTCAAGAAACAAGAACGTTCTA 179
||||||||||||||||||||| || || | |||||||||||||||||||||| ||||||
Sbjct 121 GAGATTCTTGAACGGCCAAAAAAATGATA-CCTTGTGCTTCAAGAAACAAGAGCGTTCTG 179
Query 180 TAGACCGACCGATCGTGAAGACGACAAGGGCGATTGAGATTAGAAATGAAAACAAAGAGA 239
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TAGACCGACCGATATTGAAGACGACAAGGGCGATTGAGATTAGAAATGACAACAAAGAGA 239
Query 240 ACATGATGTTTGGTCCGAGGAAGGAGAAAA-ACTTGGCCGTTATTGGAGAAATCGTCGTT 298
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 240 ACATGATGTTTGGTCCGAGGAAGGAGAAAATA-TTGGCCGTTATTGGAGAAATGGTCGTT 298
Query 299 AAAGGTGCAGCTAAAGATTATACTTGCAAGGATATAACAAAGAAGCAACCATACAAGAAT 358
|||||||||||||||| | ||||||||| ||||||||||| | ||||| |||||||
Sbjct 299 AAAGGTGCAGCTAAAG-----A-TTGCAAGGAAATAACAAAGAAACGACCATCCAAGAAT 352
Query 359 ATCATCAAAGGGCAATGGACAGCCGATGAAGACAGGAAGTTGATAAAGTTGGTGATGCAA 418
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 353 CTCATCAAAGGGCAATGGACAGCCGAAGAAGACAGGAAGTTGATAAAGTTGGTGATGCAA 412
Query 419 CATGGAGAGAGGAAATGGGCAGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CATGGAGAGAGGAAATGGGCAGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAA 472
Query 479 TGTCGTGAGAGATGGCATAATCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAA 538
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TGTCGTGAGAGATGGCACAATCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAA 532
Query 539 GAAGAAGAGAGACTTCTTGTGGAAGCACACACCAGAATCGGGAATAAGTGGGCAGAGATC 598
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 533 GAAGAAGAGAGTCTTCTTGTGGAAGCACACACCAGAATCGGTAATAAGTGGGCAGAGATC 592
Query 599 GCTAAACTCATACAAGGGCGAACCGAAAACTCGATCAAGAACCATTGGAATGCGACAAAA 658
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 593 GCTAAACTCATACAAGGACGAACCGAAAACTCGATCAAGAACCATTGGAATGCGACGAAA 652
Query 659 CGACGCCAAAACTCAAAACGCAAACATAAGCGTTCAAAAAACGCGGATAGTAACAGCGAT 718
|| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 653 CGTCGCCAAAACTCCAAACGCAAACATAAGCGTTCAAAAAACGCGGATAATAACAGCGAT 712
Query 719 ATTGATGATCTCTCTCCATCCGCTAAAAGGCCGCGCATTCTCGAAGACTATATTAAAA-A 777
|| |||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || |
Sbjct 713 ATAGATGATCTCTCTCCATCCGCTAAAAGGCCGTGCATTCTAGAAAACTATATTAGAAGA 772
Query 778 CATCGAGAATAATGACAAGAACAATGGCGAGAACATCATGAC---TACTAGTGGTAA-CA 833
||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| ||
Sbjct 773 -ATCGAGAGTAATGACAAGGACAATAGCGAGAACATCATGACGACTACTAGTGGTAATCA 831
Query 834 ATGTTCTTTCGACTTCGAAT-TATGATCAG-TTCAATTCTGAAGACTCTACATCGTCACT 891
||||||||| ||||||||| | ||||||| || ||||| ||||||||||||||||| ||
Sbjct 832 -TGTTCTTTCTACTTCGAATCT-TGATCAGATT-AATTCCGAAGACTCTACATCGTCTCT 888
Query 892 CTTGGATGATCCTTATGACGAAGAGCTTGTTTTCCTGAAAAATATCTTTGAGAACCA--- 948
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 889 TTTGGATGATCCTTATGACGAAGAGCTTGTTTTCCTGAAAAATATCTTTGCGAACCACCC 948
Query 949 --TT-CGCTCGAGAACATCAATTTGAGCCAAGGTACGGA-GA--TAACCCAGTCTTCTTC 1002
|| | |||||||||||||| |||||||||||| ||| || ||||||||||||||||
Sbjct 949 AGTTTCTCTCGAGAACATCAACCTGAGCCAAGGTATGGATGAGATAACCCAGTCTTCTTC 1008
Query 1003 ATCTGGGTTTATGATCGAGAACCCTAAACCTAAACCTAACTTGTACAACAATACTTTT-G 1061
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |
Sbjct 1009 ATCTGGGTTCATGATCGAGAACCCTAACCCTAAACCTAACTTGTACAACAATA-TTTTCG 1067
Query 1062 GAACA-CATCTTGGAGCAATGGTCACAGAACCTGCCAATTCTTCCCACCTCGCATCTGAT 1120
||| | ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1068 GAA-ATCATCTTGGAGCAATGGTCACAGAACCTTCGAATACTTCCCACCTCGCATCTGAT 1126
Query 1121 ATCTACTTATCTGATTTGTTGAACGGTACGGCGTCGTCTTCTTCTTCACTTACTTTTCTG 1180
|||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 1127 ATCTACCTATCTGATTTGTTGAATGGTACGGCGTCGTCTTCTTCTTCATTTTCTTTTCTG 1186
Query 1181 TCTTCCAACAACAATGAGCATGCCGGTGAAAACGAGTTGCTTTTGCCCCAAGCTAACTCC 1240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1187 TCTTCCAACAACAATGAGCAAGCCGGTGAAAACGAGTTGCTTTTGCCCCAAGCTAACTCC 1246
Query 1241 ACTAGCGAAAGAAGAGAAATGGATCTGATAGAAATGTTGTCTGGTTCTACTCAAGGTAGC 1300
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1247 ACAAGCGAAAGAAGAGAAATGGATCTGATAGAAATGCTCTCTGGTTCTACTCAAGGTAGC 1306
Query 1301 AACATTTGGTTCCCATTGTTCTAGCTACCGTATGA----TGTATGAGATC-TCATTATCA 1355
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1307 AACATTTGGTTCCCATTGTTCTAGCTACCTTATGACCCATGTATGAGATCATCATTATCA 1366
Query 1356 TATTGATAATTCCCTCTTCttatatttattttagtgatttagtactatttaattttatgt 1415
|||||||||||||||||| | || ||| |||||||||| ||||||||||| ||| ||
Sbjct 1367 TATTGATAATTCCCTCTT-TAATTTTTTTTTTAGTGATCTAGTACTATTT--TTT---GT 1420
Query 1416 ttttttAAAACTAAAAAAGAACTTAGATATCTCATATTCATGTTTCTTTTCATATCAAAA 1475
|||| |||| |||||| |||||| ||||| ||||||||||| |||| ||||||||||||
Sbjct 1421 TTTTAAAAAA-TAAAAAGGAACTTCGATATATCATATTCATGCTTCTATTCATATCAAAA 1479
Query 1476 GAACACCAAGTTTAT----GCGCTACAATTGATAGTCAGAGTTTTT 1517
||| | |||||| |||||||||||| ||||||||||||||
Sbjct 1480 TAACT--AGGTTTATATATGCGCTACAATTGGTAGTCAGAGTTTTT 1523
> Ahg479983 jgi|Araly1|479983|fgenesh2_kg.3__2684__AT5G58850.1
Length=1281
Score = 654 bits (354), Expect = 0.0
Identities = 997/1290 (77%), Gaps = 114/1290 (9%)
Strand=Plus/Plus
Query 104 CCGTTGACGGCGGTTGAGAGATTCTTGA-ACGGCCAAAAGAACGAAGCCTTGTGCTT-CA 161
|||||||| || |||||||||||||| | |||| ||||||||||| | |||||| || ||
Sbjct 37 CCGTTGACAGCCGTTGAGAGATTCTT-ATACGGTCAAAAGAACGATGTCTTGTG-TTCCA 94
Query 162 AGAAACAAGAACGTTCTATAGACCGACCGATCGTGAAGACGACAAGGGCGATTGAGATTA 221
||||| |||| |||||| ||||||||||||||||||||||| || | ||||||||| ||
Sbjct 95 AGAAAAAAGAGTGTTCTAGAGACCGACCGATCGTGAAGACGAAAATGTCGATTGAGACTA 154
Query 222 GAAATGAAAACAAAGAGAACATGATGTTTGGTCCGAGGAAGGAGAAA-A------AC-T- 272
||| || ||||||||||||| | |||||| |||| || ||||||| | | |
Sbjct 155 GAAGCGACAACAAAGAGAACACAACGTTTGGGCCGACGAGGGAGAAACATTTGGTCCTTA 214
Query 273 -T---GGC--C----G--TTATTGGAGAAATCGTCGTTA-AAGGTGCAGCTAAAGATTAT 319
| ||| | | |||||||||| | |||| || || ||||||| | ||| | |
Sbjct 215 ATGGCGGCAACAGAAGCCCTATTGGAGAACTGGTCGCTAGAA-GTGCAGCCAGAGA-T-T 271
Query 320 ACTTGCAAGGATA-TAACAAAGAAGCAACCATACAAGAATATCATCAAAGGGCAATGGAC 378
| | ||| | | | | ||||| | | | |||||||| |||||||||||||||||||
Sbjct 272 A--T-CAA-AACAGT-CCGAAGAAACGATCTTACAAGAACCTCATCAAAGGGCAATGGAC 326
Query 379 AGCCGATGAAGACAGGAAGTTGATAAAGTTGGTGATGCAACATGGAGAGAGGAAATGGGC 438
|| || ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 327 GGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTGAGGCAACATGGGGAGAGGAAATGGGC 386
Query 439 AGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAATGTCGTGAGAGATGGCATAA 498
| | || |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 387 ACTGATATCGGAGAAACTTGAGGGAAGAGCAGGCAAACAATGTCGTGAGAGATGGCATAA 446
Query 499 TCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAAGAAGAAGAGA-GACTTCTTG 557
||||||||||||| |||| ||||||||| | ||||||||||||||||||| | ||||||
Sbjct 447 TCATCTCCGTCCTAATATTAAGAAAGATGGATGGAGTGAAGAAGAAGAGAAGG-TTCTTG 505
Query 558 TGGAAGCACACACCAGAATCGGGAATAAGTGGGCAGAGATCGCTAAACTCATACAAGGGC 617
||||| | |||| ||||||||||| || ||||||||||| ||||||||||||| ||| |
Sbjct 506 TGGAATCGCACATGAGAATCGGGAACAAATGGGCAGAGATAGCTAAACTCATACCAGGAC 565
Query 618 GAACCGAAAACTCGATCAAGAACCATTGGAATGCGACAAAACGACGCCAAAACTCAAAAC 677
| || || || || ||||||||||||||||||||||| || ||||| ||||| |||||||
Sbjct 566 GGACTGAGAATTCTATCAAGAACCATTGGAATGCGACCAAGCGACGTCAAAATTCAAAAC 625
Query 678 GCAAACATAAGCGTTCAAA--AAACGCGGATAGTAACAGCGATATTGATGATCTCTCTCC 735
||||||| || || | || |||||| |||| | || |||| |||| |||||| |
Sbjct 626 GCAAACACAAACG--CGAATCAAACGCTGATA--A-CAATGATACCGATG-TCTCTC-C- 677
Query 736 ATCCGCTAAAAGGCCGCGCATTCTCGAAGACTATATTAAAAACATCGAGAATAATGACAA 795
||| ||||||||||| |||||||| ||||||| || |||| ||||| || ||||||||
Sbjct 678 ATCAGCTAAAAGGCCATGCATTCTCCAAGACTACATCAAAAGCATCGGGAGTAATGACAT 737
Query 796 GAACAATGGCGAGAACATCATGACTACTAGTGGTAACAATGTTCTTTCGACTTCGAAT-T 854
||||| | | | || ||||| | | | || ||||||||| || | ||| |
Sbjct 738 TAACAA-G---A-A-CA--ATGACGAGAACACC-ATCAGTGTTCTTTCTACACCTAATCT 788
Query 855 ATGATCAGTTCAATTCTGA---AGACTCTACATCGTC-ACT-CTTGGATGATCCTTATGA 909
|||||| || ||||||| ||| || ||||||| | | ||||| ||||| |||||
Sbjct 789 C-GATCAGATCTATTCTGATGGAGATTCCGCATCGTCCA-TGCTTGGC-GATCCATATGA 845
Query 910 CGAAGAGCTTGTTTTCCTGAAAAATATCTTTG-AGAACCATTCG----CTC--GAGAACA 962
||||||||| |||| ||| |||||||||||| | |||||| || ||| ||||| |
Sbjct 846 CGAAGAGCTGGTTTACCTTCAAAATATCTTTGCA-AACCATCCGATTTCTCTTGAGAATA 904
Query 963 TCAA-TTTGAGCCAAGGTACGGA-GA--TAACCCAGTCTTCTTCATCTGGGTTT-ATGAT 1017
| | |||||||||| | | || || |||| |||||||| || |||| ||| ||||
Sbjct 905 T-AGGTTTGAGCCAAACTTCCGATGAGGTAACTCAGTCTTCAGCAACTGG-TTTCATGAC 962
Query 1018 CGAGAACCCTAAACCTAAACCTAACTTGTACAACAATACTTTTGGAACACATCTTG--GA 1075
| |||||||||||||||| | | | | ||||||| | || ||||| |||| | ||
Sbjct 963 CAAGAACCCTAAACCTAA-C-T---T-GCACAACAA--CGTT-GGAACTCATCATCAAGA 1013
Query 1076 G-CAATGGTCACAGAACCTGCCAATTCTTCCCACCTCGCATCTGATATCTACTTATCTGA 1134
| || | |||||| || || ||| | ||||||| || |||||||| ||||||||| |
Sbjct 1014 GGCAGCGATCACAGCTCCGGCGAATACACCCCACCTTGCGTCTGATATATACTTATCTTA 1073
Query 1135 TTTGTTGAACGGTACGGCGTCGTCTT-CTTCTTCACTTACTTTTCTGTCTTCCA-A-C-- 1189
||||||||| || ||| || |||| | || | |||| | ||||| ||||||| | |
Sbjct 1074 TTTGTTGAATGGGACGACGCCGTCCTACTCCGACACTCA-TTTTCCGTCTTCCTCATCTT 1132
Query 1190 --A----A-C-A--A---T-GAGCATGCCGGT-GAAAACGAGTTGCTTTTGCCCCAAGCT 1234
| | | | | | ||||| | || | || |||||| ||| ||| ||||||
Sbjct 1133 CCACGTCATCCACCACCGTAGAGCACGGAGGCCGCAA-CGAGTTTCTTGAGCCTCAAGCT 1191
Query 1235 AACTCCACTAGCGAAAGAAGAGAAATGGATCTGATAGAAATGTTGTCTGGTTCTACTCAA 1294
||||| || || |||||||||||||||||||||||||| ||| | |||||||||| ||||
Sbjct 1192 AACTCTACAAGTGAAAGAAGAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATTCAA 1251
Query 1295 GGTAGCAACATTTGGTTCCCATTGTTCTAG 1324
|||||||| || || |||||||||||||||
Sbjct 1252 GGTAGCAATATCTGCTTCCCATTGTTCTAG 1281
> Ahg497373 jgi|Araly1|497373|fgenesh2_kg.277__1__AT5G58850.1
Length=1245
Score = 483 bits (261), Expect = 2e-135
Identities = 498/607 (82%), Gaps = 37/607 (6%)
Strand=Plus/Plus
Query 104 CCGTTGACGGCGGTTGAGAGATTCTTGA-ACGGCCAAAAGAACGAAGCCTTGTGCTT-CA 161
|||||||| || |||||||||||||| | |||| ||||||||||| | |||||| || ||
Sbjct 37 CCGTTGACAGCCGTTGAGAGATTCTT-ATACGGTCAAAAGAACGATGTCTTGTG-TTCCA 94
Query 162 AGAAACAAGAACGTTCTATAGACCGACCGATCGTGAAGACGACAAGGGCGATTGAGATTA 221
||||| |||| |||||| ||||||||||||||||||||||| || | ||||||||| ||
Sbjct 95 AGAAAAAAGAGTGTTCTAGAGACCGACCGATCGTGAAGACGAAAATGTCGATTGAGACTA 154
Query 222 GAAATGAAAACAAAGAGAACATGATGTTTGGTCCGAGGAAGGAGAAA-A------AC-T- 272
||| || ||||||||||||| | |||||| |||| || ||||||| | | |
Sbjct 155 GAAGCGACAACAAAGAGAACACAACGTTTGGGCCGACGAGGGAGAAACATTTGGTCCTTA 214
Query 273 -T---GGC--C----G--TTATTGGAGAAATCGTCGTTA-AAGGTGCAGCTAAAGATTAT 319
| ||| | | |||||||||| | |||| || || ||||||| | ||| | |
Sbjct 215 ATGGCGGCAACAGAAGCCCTATTGGAGAACTGGTCGCTAGAA-GTGCAGCCAGAGA-T-T 271
Query 320 ACTTGCAAGGATA-TAACAAAGAAGCAACCATACAAGAATATCATCAAAGGGCAATGGAC 378
| | ||| | | | || ||||| | | | |||||||| |||||||||||||||||||
Sbjct 272 A--T-CAA-AACAGT-ACGAAGAAACGATCTTACAAGAACCTCATCAAAGGGCAATGGAC 326
Query 379 AGCCGATGAAGACAGGAAGTTGATAAAGTTGGTGATGCAACATGGAGAGAGGAAATGGGC 438
|| || ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 327 GGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTGAGGCAACATGGGGAGAGGAAATGGGC 386
Query 439 AGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAATGTCGTGAGAGATGGCATAA 498
| | || |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 387 ACTGATATCGGAGAAACTTGAGGGAAGAGCAGGCAAACAATGTCGTGAGAGATGGCATAA 446
Query 499 TCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAAGAAGAAGAGA-GACTTCTTG 557
||||||||||||| |||| ||||||||| | ||||||||||||||||||| | ||||||
Sbjct 447 TCATCTCCGTCCTAATATTAAGAAAGATGGATGGAGTGAAGAAGAAGAGAAGG-TTCTTG 505
Query 558 TGGAAGCACACACCAGAATCGGGAATAAGTGGGCAGAGATCGCTAAACTCATACAAGGGC 617
||||| | |||| ||||||||||| || ||||||||||| ||||||||||||| ||| |
Sbjct 506 TGGAATCGCACATGAGAATCGGGAACAAATGGGCAGAGATAGCTAAACTCATACCAGGAC 565
Query 618 GAACCGAAAACTCGATCAAGAACCATTGGAATGCGACAAAACGACGCCAAAACTCAAAAC 677
| || || || || ||||||||||||||||||||||| || ||||| ||||| |||||||
Sbjct 566 GGACTGAGAATTCTATCAAGAACCATTGGAATGCGACCAAGCGACGTCAAAATTCAAAAC 625
Query 678 GCAAACA 684
|||||||
Sbjct 626 GCAAACA 632
> Ahg484568 jgi|Araly1|484568|fgenesh2_kg.5__560__AT3G27785.1
Length=1544
Score = 128 bits (69), Expect = 1e-28
Identities = 180/230 (78%), Gaps = 22/230 (10%)
Strand=Plus/Plus
Query 454 GCTTGAGGGAAGAGCAGGCAAGCAATGTC-GTGAGAGATGGCATAATCATCTCCGTCCTG 512
|||| | ||||||| || || || || | | || || |||||||| ||||||||||| |
Sbjct 730 GCTTCAAGGAAGAGTTGGAAAACAGTG-CAGAGAAAGGTGGCATAACCATCTCCGTCCCG 788
Query 513 ATATCAAGAAAGATAGT-TGGAGTGAAGAAGAAGAGA-GACTTCTTG-TGGAAGCACACA 569
|||||||||||||| || |||| ||||||||| || | || | | || | |||| | ||
Sbjct 789 ATATCAAGAAAGAT-GTATGGACTGAAGAAGAGGATATGA-TAC-TGATAAAAGC-C-CA 843
Query 570 CCA-GA-ATCGGGAATAAG-TGGGCAGAGATCGCT--AAACTCATACAAGGG-CGAACCG 623
| | || || |||||| || ||||| ||||| ||| ||| || | | ||| || ||||
Sbjct 844 CAAGGAGATTGGGAAT-AGATGGGCTGAGATTGCTCGAAA-TC-T-CCCGGGACGCACCG 899
Query 624 AAAACT-CGATCAAGAACCATTGGAATGCGACAAAACGACGCCAAAACTC 672
|||| | ||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 900 AAAA-TACGATCAAGAACCATTGGAATGCGACAAAACGTCGACAACACTC 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5