BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11060.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487938 jgi|Araly1|487938|fgenesh2_kg.6__1072__AT5G11060.1 2145 0.0
Ahg489374 jgi|Araly1|489374|fgenesh2_kg.6__2508__AT5G25220.1 992 0.0
> Ahg487938 jgi|Araly1|487938|fgenesh2_kg.6__1072__AT5G11060.1
Length=1693
Score = 2145 bits (1161), Expect = 0.0
Identities = 1433/1554 (92%), Gaps = 60/1554 (4%)
Strand=Plus/Plus
Query 281 CACGAAAACGATGGCGTTTCATAACAATCACTTTAATCATTTCACCGACCAACAACAACA 340
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 173 CACGAAAACGATGGCGTTTCATAACAATCACTTTAATCACTTCACCGACCAACAACAACA 232
Query 341 TCAG-C--CTCCTCCTCCG---CCG-CA-A-CAGCAGCAGCAACAACATTTTCAAGAATC 391
||| | ||||||||||| ||| || | ||||| || |||||||||||||| |||||
Sbjct 233 CCAGCCTTCTCCTCCTCCGCCACCGTCACAGCAGCAACAACAACAACATTTTCATGAATC 292
Query 392 AGCACCCCCTAATTGGCTCCTCCGCTCCGACAACAACTTCCTCAATCTCCACACAGCTGC 451
||| || ||||||||||||||||||||||| ||||| || || || || || || |
Sbjct 293 AGCTCCGCCTAATTGGCTCCTCCGCTCCGATAACAA-TT--TC---CT-CA-AC--CT-C 341
Query 452 CTCTGCCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTC 511
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 CAC-ACCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTC 400
Query 512 ACGATCCTCATCCTTCCTCCAACGAGGC--AACACCGCAAACAACAACAACAACGAAACA 569
|||||||||||||||||||||||| ||| |||| || | ||||||||||||||||||
Sbjct 401 ACGATCCTCATCCTTCCTCCAACGCGGCGGAACA--GC--A-AACAACAACAACGAAACA 455
Query 570 TCCGGTGACGTCATCGAAGACGTTC-CCGGCGGAGAGGAGTCAATGATCGGAGAGAAGAA 628
|||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 456 TCCGGTGACGTCATCGAAGACG-TCGCCGGCGGAGAGGAGTCAACGATCGGAGAGAAGAA 514
Query 629 GGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATA 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 515 GGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTCTA 574
Query 689 CGAGCAACTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCT 748
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CGAGCAGCTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCT 634
Query 749 TCCGAGGATAGACGCACAGCTTGCTCAGTCTCAAAACGTCGTGGCTAAGTACTCAACTTT 808
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 635 TCCGAGGATTGACGCACAGCTTGCTCAGTCGCAAAACGTCGTGGCTAAGTACTCAACCTT 694
Query 809 AGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCA 754
Query 869 TTATGTACTATTGCTTTGCTCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGC 928
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 755 TTATGTACTATTGCTTTGCTCTTTCAAAGAACAATTGCAACAGCATGTTCGAGTTCATGC 814
Query 929 AATGGAAGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGT 988
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 815 AATGGAAGCTGTTATGGCCTGTTGGGAGATTGAGCAGTCTCTTCAAAGTTTTACAGGAGT 874
Query 989 ATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAG 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 ATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAG 934
Query 1049 TGATGCTCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTTTGGTCCTCTAGTTCCCAC 1108
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 935 TGATGCTCCTTTGTTTGATGGAAGCTTAGATGGTTTAGGGTTTGGTCCTCTAGTTCCCAC 994
Query 1109 TGAGAGCGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCA 1168
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 995 TGAGAGTGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTTAAACATGAACTCAAGCA 1054
Query 1169 GGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGG 1228
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGG 1114
Query 1229 AAAATTACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTG 1288
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1115 AAAATTACCAGGAGATACCACCTCTGTTCTCAAAGCATGGTGGCAATCTCATTCTAAGTG 1174
Query 1289 GCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAA 1348
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1175 GCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACAGGTTTGCAGCTCAA 1234
Query 1349 ACAGATAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTGGCATAGCAATCCATCTTC 1408
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1235 ACAGATAAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCATAGCAATCCATCTTC 1294
Query 1409 TTCTACCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGACCG 1468
|||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 1295 TTCTACCGTCTCAAAGAACAAACGCAGAAGCAATGCAGGTGAAAATAGCGGAAGAGAGCG 1354
Query 1469 TTGAGATCA-----A-GCTTGCATGTAGAGATCCAAAAGCTTTATAGAAAGGTGGAGGCA 1522
||||| ||| | ||| ||||| |||||||||||||||| ||||||| ||||| ||
Sbjct 1355 TTGAGGTCACTTTGAAGCTCGCATGGAGAGATCCAAAAGCTTAATAGAAAATTGGAGACA 1414
Query 1523 T---GAAGACAAAGAATTCTTACACAACAAACGTAGGACGTAATTTT-GTGCCAGTACAT 1578
| |||||||| ||||||||||||||||||| ||| |||||||||| ||| || |||||
Sbjct 1415 TCATGAAGACAA-GAATTCTTACACAACAAACTTAGAACGTAATTTTTGTGTCATTACAT 1473
Query 1579 GGTATGGCTTTCATATTTGGTAATGATTAGGGCCACACAAAATTAAACCCCAAAGCATGA 1638
|||||| ||| |||| || ||||||||||||| ||||| | | |||||||| ||||
Sbjct 1474 GGTATGACTTCCATAGTTCGTAATGATTAGGGA-ACACACCA--AG-CCCCAAAGTATGA 1529
Query 1639 TTTGTAATATGAGGTTTTAGATGGACT--TT-ATGATAGGATCGTCAGTCTTCACTGCCA 1695
||||||||||||||||||||||||||| || |||||||||||||||||| || | | |
Sbjct 1530 TTTGTAATATGAGGTTTTAGATGGACTACTTTATGATAGGATCGTCAGTCGTCG-T-C-A 1586
Query 1696 TCT-CCATTCTCCACCATCAATCCATCATTATATCTTGTGAATAACATGGAAATTTCTCG 1754
|| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1587 -CTGCCAT-CTCCACCATCAATCCATCATTATATCTTGTGAATAACATGGAGATTTCTCG 1644
Query 1755 TTAT-GCATTTAATTTGTGCAATCATTGGCCGTAATCTACACAAATATACATAT 1807
|||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1645 TTATAGCATTT-----GTGCAATCATTGGCCGTAATCTACACAAATATGCATAT 1693
Score = 285 bits (154), Expect = 8e-76
Identities = 171/178 (96%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 45 AAGAAGAATAAATATAGGAATAAATCGTCTTTTTTGGTGTAAGCTACATATAAAATTCAA 104
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAATAAATATAGGAATAAATCGTC-TTTTTGGTGTAAGCTACATATAAAATTCAA 59
Query 105 ACCG-TCAAACACACATACACATCGAAACCCTTATATTTCATTTTCTTTCTGTTTTAGAG 163
| || || || |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 60 A-CGTTC-AA-ACACATACACATCGAAACCCTTATATTTCATTTTCTTTCT-TTTTAAAG 115
Query 164 AAGAAAGTTTCTATAATTGATTGATAAATCTGAACATCAAAGCTAAGAATTTCTCTTC 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 AAGAAAGTTTCTATAATTGATTGATAAATCTGAACATCAAAGCTAAGAATTTCTCTTC 173
> Ahg489374 jgi|Araly1|489374|fgenesh2_kg.6__2508__AT5G25220.1
Length=1816
Score = 992 bits (537), Expect = 0.0
Identities = 735/832 (88%), Gaps = 8/832 (1%)
Strand=Plus/Plus
Query 638 GAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATACGAGCAACT 697
||| ||||||||||||||||||||||||||||| || |||||||| || |||||||| ||
Sbjct 590 GAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTCTCTCATCCTCTTTACGAGCAGCT 649
Query 698 TTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGAT 757
||||||||| ||||| || || |||| ||||| || ||||| |||||||||||||| ||
Sbjct 650 TTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAAT 709
Query 758 AGACGCACAGCTTGCTCAGTCTCAAAACGTCGTGGCTAAGTACTCAACTTTA---GAAGC 814
|| || |||||||||||||| ||| ||||||| ||||| |||||| ||||| | ||
Sbjct 710 CGATGCTCAGCTTGCTCAGTCACAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGC 769
Query 815 CGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGT 874
|||||||||| |||| ||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 770 CGCTCAAGGA---CTCGTCGGTGATGACAAAGAGCTTGACCAGTTCATGACACATTATGT 826
Query 875 ACTATTGCTTTGCTCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGCAATGGA 934
| || || || ||||||||||| ||| ||||||| || ||||||||||||||||||||
Sbjct 827 GTTGTTACTGTGTTCTTTCAAAGAGCAATTGCAACAACACGTTCGTGTTCATGCAATGGA 886
Query 935 AGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGTATCTCC 994
|||||| ||||| |||||||||||||| ||||| |||||||| || ||||| || |||||
Sbjct 887 AGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGTGTGTCTCC 946
Query 995 TGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATGC 1054
||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 947 TGGTGAAGGGATGGGAGCAACAATGTCTGATGATGAAGATGAACAAGTAGAGAGTGATGC 1006
Query 1055 TCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTTTGGTCCTCTAGTTCCCACTGAGAG 1114
| ||||||| ||||| |||||||||| ||| |||||||||||| | ||||| ||||||||
Sbjct 1007 TAATTTGTTCGATGGGAGCTTAGATGTGTTGGGGTTTGGTCCTTTGGTTCCTACTGAGAG 1066
Query 1115 CGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCAGGGTTA 1174
|||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 1067 TGAGAGATCGTTGATGGAAAGAGTTAGACAAGAACTCAAACATGAACTCAAACAGGGTTA 1126
Query 1175 CAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGAAAATT 1234
||||||||| || || |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1127 CAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTGAGGAAGAGAAGAGCTGGGAAATT 1186
Query 1235 ACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTGGCCTTA 1294
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1187 ACCAGGAGACACTACCTCTGTTCTTAAAGCATGGTGGCAATCTCATTCTAAGTGGCCTTA 1246
Query 1295 CCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAAA-CAGA 1353
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||
Sbjct 1247 CCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCT-AAAGCAGA 1305
Query 1354 TAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTGGCATAGCAATCCATCTTCTTCTA 1413
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1306 TAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCA 1365
Query 1414 CCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGA 1465
| |||| ||||| |||||| ||||||||||||||| || ||||| |||||
Sbjct 1366 CTGTCTTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGGAGAGA 1417
Score = 95.3 bits (51), Expect = 1e-18
Identities = 114/142 (80%), Gaps = 14/142 (10%)
Strand=Plus/Plus
Query 421 ACAACAACTTCCTCAATCTCCACACAGCT-GC-CT--CTGC-C-GCCGCTA-CAAGCTCC 473
||||||| ||||| || |||||||||||| | || | | | |||| | | ||||||
Sbjct 313 ACAACAATTTCCTTAACCTCCACACAGCTACCGCTAACACCACAACCGCAAGC-AGCTCC 371
Query 474 GATTCTCCTTCTTCCGCCGCCGCT------AACCAGTGGCTCTCACGATCCTCATCCTTC 527
|||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 372 GATTCTCCTTCTTCCGCCGCCGCTGCTGCTAACCAGTGGCTCTCTCGCTCCTCCTCCTTC 431
Query 528 CTCCAACGAGGCAACACCGCAA 549
||||||||| ||||| |||||
Sbjct 432 CTCCAACGAAACAACAACGCAA 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5