BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11070.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487939 jgi|Araly1|487939|fgenesh2_kg.6__1073__AT5G11070.1 813 0.0
> Ahg487939 jgi|Araly1|487939|fgenesh2_kg.6__1073__AT5G11070.1
Length=675
Score = 813 bits (440), Expect = 0.0
Identities = 597/665 (90%), Gaps = 42/665 (6%)
Strand=Plus/Plus
Query 83 TTTACAAGATCAAGAATGTATAACGAATGCAGCTCTCCCTCCACCGCAAGATCAACAACG 142
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 42 TTTTCAAGATCAAGAATGTACAACGAATGCAGCTCTCCCTCCACCGCAAGATCAACGACG 101
Query 143 AGAGTCACAAATCACAGAATGAGATCTCCGATCTGTTGTATAGGAGCCAACGCGGTGGTT 202
|||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 102 AGAGGAACTAATCACCGAATGAGATCTCCGATCTGTTGTTTAGGAGCCAACGCGGTGGTT 161
Query 203 GAGCCAGAAGCCATGATGATCGGAGGAGAACAAAGAACACCAAGATCTCCTTACGAATGG 262
||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 162 GAGCCTGAAGCCATGATGATC---GGAGAACAAAGAACTCCGAGATCTCCTTACGAATGG 218
Query 263 CTCAAATCTACGGCGCAGGAGCTAGAGTTAAGAGATCGGTGCCGGCGTGTGAAGTCACGT 322
|||||||| |||||||| || || ||||||||||||||||||||||| ||||||||||||
Sbjct 219 CTCAAATCCACGGCGCAAGAACTCGAGTTAAGAGATCGGTGCCGGCGCGTGAAGTCACGT 278
Query 323 ATCAAGGTTACGTGTCGTAACAACAATTGTGCTTATAATAATTGTGTTCATCATCAT--- 379
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 279 ATCAAGGTTACGTGTCGTAACAACAATTGTGC-T-T-ATAATTGTGTTCATCATCATCAG 335
Query 380 ---CATCATAG-C--CAGAGTTATCCTGGAGATTTCAGTTACGATCCGTTGAGTTACGCG 433
||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 AGACATCAGAGCCATCAGAGTTATCCTGGAGATTTCAGTTACGATCCGTTGAGTTACGCG 395
Query 434 CTCAATTTCGAGGATAATGTGAGAGCTGATGACGATGGTTCTTTTCCTAATTTCACGGCG 493
||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||
Sbjct 396 CTCAATTTCGAGGATAATGTGCGAGCTGATGAAGATGGTTCTTTCCCGAATTTCACGGCG 455
Query 494 AGGTTGCCTCAGTCGCCGGTGACCAAGACGAGATCGGCGACGGTTGATTTGATCTC-TTT 552
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 456 AGGTTGCCTCAGTCGCCGGTGACGAAGACGAGATCAGCGACGGTTGATTTGATCTCGTTT 515
Query 553 CTGACGGAATAATTAATTACAAAAAGATTCTTTaaaaaaaTATCTTTTCGTTTTCTTGTG 612
|||||| | || | | || || ||| | |||||||||||||||||
Sbjct 516 -TGACGG--T--TT--T-A-AA---GA------AAA----T--CTTTTCGTTTTCTTGTG 551
Query 613 TGTGACGGTGGAATGTAACTGTTCGCCGGAGAAATGACGTAAGAATATGACGTCAGGTGT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 552 TGTGACGGTGGAATGTAACTGTTCGCCGGAGAAATGACGTAAGAATATGACGTCATGTAT 611
Query 673 ATGTAAATGCTCTCTCGCCATATTGATTTGATATACTTGTAAAATTGATGTGTGC-AAAT 731
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 612 ATGTAAATGCTCTCTCGCCATATTGATTTGATATACTTGTGAAATTGATGTGTGCCAAA- 670
Query 732 AAAAA 736
|||||
Sbjct 671 AAAAA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5