BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11080.2

Length=1730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487940 jgi|Araly1|487940|fgenesh2_kg.6__1074__AT5G11080.1         287    2e-76


> Ahg487940 jgi|Araly1|487940|fgenesh2_kg.6__1074__AT5G11080.1
Length=840

 Score =  287 bits (155),  Expect = 2e-76
 Identities = 282/339 (83%), Gaps = 25/339 (7%)
 Strand=Plus/Plus

Query  1016  AATATTTCAATGTTGCTTGTGGATCAAGTAAATGTTACGGACCCATCAGCCCGAAGATTG  1075
             |||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct  376   AATATTTCAATGCTGCTTGTGGATGAAGTAAATGTCACGGATCCATCAGCCCGAAGATTG  435

Query  1076  CGGCAAGAAAGAGTGGTTGAATCAGGAAGCCTCTTGTGTCACTTAGGAAGTTCAATTCTT  1135
             ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  436   CGGCAAGAAAGAGTGGTTGAATCAGGAAGCCTCTTGTGTAACTTAGGAAGTTCACTTCTT  495

Query  1136  GCGTTAGGCCATGGCACCTCAAGAATTAGCATGGGAGAAACACAA-GATGATGTTGGTCG  1194
             |||     |||   | | ||||||||||||||||||||||||||  | | || |    | 
Sbjct  496   GCG-----CCA---C-C-TCAAGAATTAGCATGGGAGAAACACAGTGTTCATATCCC-CA  544

Query  1195  TGCAGTGTTCATA-TCCCCAACAGGTCAAAATCGGTTACAGTCACATCACTCTTGGCTGC  1253
               ||| |  || | ||   |||||||     ||  || |  |||||||||||||||||||
Sbjct  545   A-CAGGG--CAAAATCGGTAACAGGTTTGT-TC--TT-CT-TCACATCACTCTTGGCTGC  596

Query  1254  AAACAAGTATTAGAGCAGGAAGGAGGATAAGAATTATAT----CACGTAGGAGATCATCG  1309
             ||||||||||  ||||||||||||| |||||| ||||||    ||||| |||||||||||
Sbjct  597   AAACAAGTATCGGAGCAGGAAGGAGCATAAGAGTTATATATTTCACGTCGGAGATCATCG  656

Query  1310  AGGAATCAACAACATTCCGATCTCTATTTCAATGCATCT  1348
             |||||||||||||||| ||||||||||||| ||||||||
Sbjct  657   AGGAATCAACAACATTTCGATCTCTATTTCGATGCATCT  695


 Score =  110 bits (59),  Expect = 5e-23
 Identities = 67/71 (94%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  812  GTGATTCCAGATTCTATCACAACCTTATCTCGACATCTGGATCGTATAAGACAAGTGTTT  871
            ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  242  GTGATTCCATATTCTATCACAACCTTATCTCGACATCTGAATCGTTTAAGACAAGTGTTT  301

Query  872  GCTACATATGG  882
            ||||| |||||
Sbjct  302  GCTACCTATGG  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 64905777480


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5