BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11100.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325643 jgi|Araly1|325643|fgenesh1_pm.C_scaffold_6000863 2377 0.0
> Ahg325643 jgi|Araly1|325643|fgenesh1_pm.C_scaffold_6000863
Length=1743
Score = 2377 bits (1287), Expect = 0.0
Identities = 1431/1501 (95%), Gaps = 8/1501 (1%)
Strand=Plus/Plus
Query 211 TTAAATTGGCTTAATCTTGAACTTGAAAAGATCTGGCCTTATGTAAATGAGGCAGCTTCT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TTAAATTGGCTTAATCTTGAACTTGAAAAGATCTGGCCTTATGTAAATGAGGCAGCTTCT 309
Query 271 GAGCTGATTAAAAGCAGTGTGGAACCAGTACTTGAACAGTATACACCAGCTATGTTAGCA 330
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 310 GAGCTGATTAAAAGCAGTGTGGAGCCAGTACTTGAACAGTATACACCACCTATGTTAGCA 369
Query 331 TCTCTCAAGTTCTCTAAATTCACACTTGGGACTGTGGCTCCTCAGTTCACAGGAGTTTCT 390
||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 370 TCTCTTAAGTTCTCTAAGTTTACTCTTGGGACTGTGGCTCCTCAGTTCACAGGAGTTTCT 429
Query 391 ATCTTAGAAAGTGAAAGTGGACCTAATGGAATCACAATGGAACTTGAAATGCAATGGGAT 450
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 430 ATCTTAGAAAGTGAAAGTGGATCTAATGGAATTACAATGGAACTTGAAATGCAATGGGAC 489
Query 451 GGTAATCCAAAAATCGTGTTGGATGTCAAAACCTTACTTGGCGTGTCTCTACCTATTGAG 510
|||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||
Sbjct 490 GGTAATCCAAAAATCGTGTTGGATATCAAAACCTTACTTGGCGTGGCTTTACCGATTGAG 549
Query 511 GTCAAAAACATAGGATTCACAGGTGTTTTCAGGCTGAT-TTTCAAACCTCTTGTTGATGA 569
|| ||||| |||||||||||||||||||||||| |||| ||| ||||||||| |||||||
Sbjct 550 GTGAAAAATATAGGATTCACAGGTGTTTTCAGGTTGATATTT-AAACCTCTTATTGATGA 608
Query 570 ATTCCCTTGCTTTGGGGCACTTTCTTATTCACTCCGCGAGAAGAAAGGGCTTGATTTTAC 629
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 609 ATTCCCTTGCTTTGGGGCACTTTCTTATTCACTGCGCGAGAAGAAAGGGCTTGATTTCAC 668
Query 630 CCTCAAAGTTATAGGTGGTGAATTAACATCAATTCCAGGGATTTCAGATGCAATCGAAGA 689
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 669 ACTTAAAGTTATAGGTGGTGAATTGACATCAATTCCAGGGATTTCAGATGCAATCGAAGA 728
Query 690 AACTATTCGTGACGCCATTGAAGACAGTATAACATGGCCAGTTAGGAAAATTATACCTAT 749
||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 729 AACTATTCGTGACGCAATAGAAGACAGTATAACATGGCCTGTTAGGAAAATCATACCTAT 788
Query 750 TTTACCAGGAGATTACAGTGATCTGGAGTTGAAACCTGTTGGAAAATTGGATGTGAAGGT 809
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 789 ATTACCAGGAGATTACAGTGATCTGGAGTTGAAACCTGTTGGAAAATTAGATGTGAAGCT 848
Query 810 TGTGCAAGCAAAGGACTTAGCTAACAAAGACATGATTGGAAAATCTGATCCTTACGCTAT 869
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 849 TGTGCAAGCAAAGGACTTAGCTAACAAAGACATGATTGGAAAATCTGATCCTTACGCTGT 908
Query 870 TGTATTCATTCGCCCTTTGCCTGACAGAACCAAAAAGACCAAAACTATTAGTAACTCGTT 929
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 909 TGTATTCATTCGCCCTTTGCGTGACAAAACCAAAAGGACCAAAACTATTAGTAACTCGTT 968
Query 930 GAATCCGATTTGGAATGAACATTTTGAGTTCATTGTGGAAGATGTCTCAACTCAACATTT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GAATCCGATTTGGAATGAACATTTTGAGTTCATTGTGGAAGATGTCTCAACTCAACATTT 1028
Query 990 GACAGTAAGAGTCTTTGACGACGAAGGAGTTGGATCTTCTCAGCTTATTGGGGCTGCTCA 1049
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1029 GACAGTAAGAGTGTTTGACGACGAAGGAGTTGGATCTTCTCAGCTTATTGGGGCTGCGCA 1088
Query 1050 AGTACCGTTAAATGAACTCGTACCCGGGAAAGTTAAAGATATTTGGTTGAAGTTAGTCAA 1109
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1089 AGTACCGTTAAATGAACTCGTGCCCGGGAAAGTTAAAGATATTTGGTTGAAGCTAGTCAA 1148
Query 1110 GGATTTAGAGATCCAAAGGGATACAAAAAATAGGGGTCAGGTGCAGTTGGAGCTCTTATA 1169
||||||||||||||||||||||||||||||| |||||||| | | ||||||| ||||
Sbjct 1149 GGATTTAGAGATCCAAAGGGATACAAAAAATCGGGGTCAG-T----T-GGAGCTCCTATA 1202
Query 1170 TTGTCCCTTAGGCAAAGAAGGCGGATTGAAGAACCCGTTTAACCCGGACTACTCATTGAC 1229
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TTGTCCTTTAGGCAAAGAAGGCGGATTGAAGAACCCGTTTAACCCGGACTACTCATTGAC 1262
Query 1230 CATTTTAGAGAAGGTACTGAAGCCGGAAAGCGAGGATTCGGATGCCACGGATATGAAAAA 1289
|||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||
Sbjct 1263 CATTTTAGAGAAGGTACTTAAGCCGGAAAGCGAGGATTCCGATGCTACGGATGTGAAAAA 1322
Query 1290 ACTGGTGACCTCGAAGAAAAAAGATGTGATAGTGAGAGGAGTGTTGTCTGTGACAGTGGT 1349
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 ACCGGCGACCTCGAAGAAAAAAGATGTGATAGTGAGAGGAGTGTTGTCTGTGACAGTGGT 1382
Query 1350 GGCAGCTGAAGACTTACCAGCTGTAGATTTTATGGGAAAAGCAGATGCATTTGTGGTAAT 1409
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1383 GGCTGCTGAAGACTTACCAGCTGTAGATTTAATGGGAAAGGCAGATGCATTTGTGGTAAT 1442
Query 1410 CACATTGAAGAAATCAGAAACGAAATCCAAGACAAGGGTAGTACCGGATAGCTTGAATCC 1469
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 CACATTGAAGAAATCGGAATCGAAATCCAAGACAAGGGTAGTACCGGATAGCTTGAATCC 1502
Query 1470 GGTTTGGAACCAGACGTTTGATTTTGTAGTGGAAGATGCTTTGCATGATCTATTGACGCT 1529
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1503 GATTTGGAACCAAACGTTTGATTTTGTAGTGGAAGATGCTTTGCATGATCTATTGATGCT 1562
Query 1530 TGAAGTATGGGACCATGACAAATTTGGCAAGGACAAGATAGGGAGAGTGATAATGACATT 1589
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1563 AGAAGTATGGGACCATGACAAATTTGGTAAAGATAAGATAGGGAGAGTGATAATGACATT 1622
Query 1590 GACGCGAGTGATGTTAGAAGGAGAGTTTCAAGAGTGGTTTGAGTTAGATGGAGCTAAATC 1649
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 GACACGAGTGATGTTGGAAGGAGAGTTTCAAGAGTGGTTTGAGTTAGATGGAGCTAAATC 1682
Query 1650 AGGGAAGCTTTGTGTCCATCTTAAATGGACTCCTAGGCTTAAGCTCAGAGACGCCTCTTG 1709
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1683 AGGGAAGCTTTGTGTCCATCTCAAATGGACTCCTAGGCTTAAGCTCAGAGACGCTTCTTG 1742
Query 1710 A 1710
|
Sbjct 1743 A 1743
Score = 342 bits (185), Expect = 4e-93
Identities = 203/212 (96%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTTTCTCTTTGGTTTGTTCATAGGAATCGCGGTTTCTTTCGGTTTGGTCGTCGCA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGGGTTTTCTCTTTGGTTTGTTCATAGGAATCGCAGTTTCTTTCGGTTTGGTAGTCGCA 60
Query 61 TTTGCTCGCTACTCTAGTGTCAGATCCACTCGTCGAGCTGATTTGGCAAAGACCATTGCT 120
||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGCACGCTATTCTAATGTCAGATCCACTCGTCGAGCTGATTTGGCAAAGACCATTGCT 120
Query 121 GCATTTGCAAGAATGACAGTTCAAGATTCGAGAAAACTTCTCCCGGGAGATTTTTATCCT 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GCATTTGCAAGAATGACTGTTCAAGATTCGAGAAAACTTCTCCCTGGAGATTTTTATCCT 180
Query 181 TCTTGGGTTGTGTTTTCTCAGAGACAAAAGTT 212
|| ||| |||||||||||||||||||||||||
Sbjct 181 TCCTGGATTGTGTTTTCTCAGAGACAAAAGTT 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5