BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11130.1 Length=1443 Score E Sequences producing significant alignments: (Bits) Value Ahg325645 jgi|Araly1|325645|fgenesh1_pm.C_scaffold_6000865 1591 0.0 Ahg487944 jgi|Araly1|487944|fgenesh2_kg.6__1078__AT5G11120.1 621 4e-177 Ahg326421 jgi|Araly1|326421|fgenesh1_pm.C_scaffold_6001641 113 3e-24 > Ahg325645 jgi|Araly1|325645|fgenesh1_pm.C_scaffold_6000865 Length=1011 Score = 1591 bits (861), Expect = 0.0 Identities = 962/1012 (95%), Gaps = 2/1012 (0%) Strand=Plus/Plus Query 433 ATGGAGAAGAGATTCAAGATATGGACATATAGAGAAGGAGAAGCTCCTCTGTTTCACAAG 492 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAAGAGATTCAAGATATGGACATATAGAGAAGGAGAAGCTCCTCTGTTTCACAAA 60 Query 493 GGTCCACTCAACAACATTTACGCCATTGAAGGCCAATTCATGGACGAGATCGAGAACGGA 552 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 GGTCCACTCAACAACATTTACGCTATTGAAGGCCAATTCATGGACGAGATCGAGAACGGA 120 Query 553 AACAGCCGTTTTAAGGCGGCTTCACCGGAGGAAGCCACTGTGTTCTACATCCCCGTAGGG 612 |||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 121 AACAGCCGTTACAAGGCGGCTTCACCGGAGGAAGCCACCGTGTTCTACATCCCTGTAGGG 180 Query 613 ATTGTCAATATCATACGCTTTGTCTATAGACCTTACACTAGCTATGCACGTGACCGTCTC 672 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATCGTCAATATCATACGCTTTGTCTATAGACCTTACACTAGCTATGCACGTGACCGTCTC 240 Query 673 CAAAACATTGTTAAAGACTACATCTCTCTCATCTCTAACCGTTACCCTTACTGGAATCGC 732 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CAAAACATTGTCAAAGACTACATCTCTCTCATCTCTAACCGTTACCCTTACTGGAATCGC 300 Query 733 AGTCGCGGTGCTGATCACTTCTTCCTCTCCTGTCACGATTGGGCACCTGATGTCTCAGCT 792 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGTCGTGGTGCTGACCACTTCTTCCTCTCCTGTCACGATTGGGCACCTGATGTCTCAGCT 360 Query 793 GTGGATCCAGAATTATACAAGCATTTTATAAGAGCTCTCTGCAATGCCAATTCCTCCGAA 852 |||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||| Sbjct 361 GTGGATCCAGAACTATACAGGCATTTTATCAGAGCTCTCTGCAATGCCAATGCCTCCGAG 420 Query 853 GGATTCACCCCAATGAGAGACGTTTCATTACCGGAAATCAACATTCCACACAGCCAATTA 912 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 421 GGATTCACCCCAATGAGAGACGTTTCATTACCTGAAATCAACATTCCCCACAGCCAATTA 480 Query 913 GGGTTTGTACACACCGGAGAACCGCCTCAAAACCGCAAACTCTTAGCATTCTTCGCGGGC 972 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 481 GGGTTTGTACACACCGGAGAAGCGCCTCAAAACCGCAAACTCTTAGCATTCTTCGCGGGC 540 Query 973 GGTTCTCACGGAGATGTCCGAAAAATACTTTTCCAACACTGGAAAGAAAAAGACAAAGAC 1032 |||||||||||||| ||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 541 GGTTCTCACGGAGAAGTCCGGAAAATACTTTTCGAACAATGGAAAGAAAAAGACAAAGAC 600 Query 1033 GTCCTTGTCTACGAGAATCTCCCCAAAACCATGAACTACACGAAAATGATGGACAAGGCA 1092 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 601 GTCCTTGTCTACGAGTATCTCCCCAAAACCATGAACTACACGAAAATGATGGATAAGGCA 660 Query 1093 AAGTTTTGTTTATGTCCTAGCGGTTGGGAAGTGGCGAGTCCGAGAATTGTCGAGTCACTT 1152 ||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||| Sbjct 661 AAGTTTTGTTTGTGTCCGAGCGGTTGGGAAGTGGCGAGTCCAAGAATCGTGGAGTCTCTT 720 Query 1153 TACTCCGGCTGTGTTCCGGTCATCATAGCTGATTATTACGTCCTCCCGTTCAGCGACGTG 1212 ||||| || || |||||||||||||| || |||| |||||| |||||||||||||||||| Sbjct 721 TACTCGGGTTGCGTTCCGGTCATCATCGCGGATTCTTACGTTCTCCCGTTCAGCGACGTG 780 Query 1213 TTGAATTGGAAGACATTCTCGGTTCATATTCCAATATCAAAGATGCCTGACATAAAGAAG 1272 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 781 TTGAATTGGAAGACATTCTCGGTTCATATTCCAATATCGAAGATGCCTGACATAAAGAAG 840 Query 1273 ATTCTAGAAGCAATAACAGAAGAAGAGTACTTGA-ATATGCAAAGAAGAGTGCTTGAGGT 1331 ||||||||||| ||| |||||||||||||||| | | ||||| || ||||||||||| || Sbjct 841 ATTCTAGAAGCGATATCAGAAGAAGAGTACTT-AGAGATGCAGAGGAGAGTGCTTGAAGT 899 Query 1332 TCGGAAACACTTTGTCATAAACAGACCATCAAAGCCATATGATATGTTGCATATGATCAT 1391 ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 900 TCGGAAACACTTTGTGATAAACAGACCTTCAAAACCATATGATATGTTGCATATGATCAT 959 Query 1392 GCATTCTATTTGGTTACGGAGGCTTAATGTTCGAATCCCTCTTTCACAGTGA 1443 |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 960 GCATTCTATTTGGTTACGGAGGCTTAATGTTCGAATCCCTCTTTCAGAGTGA 1011 > Ahg487944 jgi|Araly1|487944|fgenesh2_kg.6__1078__AT5G11120.1 Length=445 Score = 621 bits (336), Expect = 4e-177 Identities = 394/421 (94%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 1 ATGGCGGATCTGACTTGTACGACACCGTTTTTGCTCTATCCATCACTCGTTATCATTCTC 60 |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 1 ATGGCGGATCTGACATGTACGACGCCGTTTTTGCTCTATCCATCACTCGTCATCATCCTC 60 Query 61 TTCTTCTACTCCATTAACCACCATAACCAAATATTCTCATCCGTCGTTGATGATGATCCT 120 ||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||| Sbjct 61 TTCTTCTACTCAATTAACCACCATAACCAAATATTCTCCTCCGTCCTCGATGATGATCCT 120 Query 121 TCTTGTCGTCTCTCGTCTTCTCCACAAGCTGTTTTCTCTTCCTTCAGAATCTTCCCTTTT 180 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 TCTTGTCGTCTCTCGTCTTCTCCACAAGCTGTTTTCTCTTCCTTGAGAATCTTCCCTTTC 180 Query 181 CGTTCTTCATCGTCTTGTCTCAATATCACTTCCAACAACAATTCGACGTCAGAAGTTGTG 240 |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 CGTTCTTCCTCTTCTTGTCTCAATATTACTTCCAACAACAATTCGACGTCAGAAGTTGTG 240 Query 241 GTGGTAGAAGAAGTTGATGAAGCGGTGGAGAGGATTGAAGAAGGTTTGGCGATGGCTAGA 300 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 241 GTGGTAGAAGAAGTTGATGAAGCGGTGGAGAGAATCGAAGAAGGTTTGGCGATGGCTAGA 300 Query 301 GCCGCCATAAGGAAGGCCGGAGAAAAGAATCTCCGTCGTGATCGTGATCGGACGAATAAT 360 |||||||||||||| ||||||||| ||||||||||||||||||| || || | | |||| Sbjct 301 GCCGCCATAAGGAAAGCCGGAGAAGAGAATCTCCGTCGTGATCG-GA-CG-A--A-TAAT 354 Query 361 TCGGATGTGGGAGTCGTATCTAA-TGGATCTGTCTATCTCAATGCTTTTACTTTTCATCA 419 |||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||| Sbjct 355 TCGGATGTGGGATTCGTATC-AAGTGGATCTGTCTATCTCAACGCTTTTACTTTTCATCA 413 Query 420 G 420 | Sbjct 414 G 414 > Ahg326421 jgi|Araly1|326421|fgenesh1_pm.C_scaffold_6001641 Length=1965 Score = 113 bits (61), Expect = 3e-24 Identities = 122/150 (81%), Gaps = 10/150 (7%) Strand=Plus/Plus Query 403 GCTTTTACTTTTCATCAGAGTCACAAAGAGATGGAGAAGAGATTC-AAGATATGGACATA 461 |||||| | |||||||| || || | ||||||||||||| |||| ||| | ||| || Sbjct 928 GCTTTTGCATTTCATCAAAGCCATATGGAGATGGAGAAGAAATTCAAAG-TGTGGGTGTA 986 Query 462 TAGAGAAGGAGA-AGCTCC-TCT-GTTTCACAAGGGTCCACTCAACAACATTTAC-GCCA 517 ||||||||||| | | || | | | |||||| ||||||| | |||||||| ||| | || Sbjct 987 CAGAGAAGGAGACA-CACCGT-TAG-TTCACATGGGTCCAGTGAACAACATATACAG-CA 1042 Query 518 TTGAAGGCCAATTCATGGACGAGATCGAGA 547 |||||||||||||||||||||||||||||| Sbjct 1043 TTGAAGGCCAATTCATGGACGAGATCGAGA 1072 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53973877165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5