BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11130.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325645 jgi|Araly1|325645|fgenesh1_pm.C_scaffold_6000865 1591 0.0
Ahg487944 jgi|Araly1|487944|fgenesh2_kg.6__1078__AT5G11120.1 621 4e-177
Ahg326421 jgi|Araly1|326421|fgenesh1_pm.C_scaffold_6001641 113 3e-24
> Ahg325645 jgi|Araly1|325645|fgenesh1_pm.C_scaffold_6000865
Length=1011
Score = 1591 bits (861), Expect = 0.0
Identities = 962/1012 (95%), Gaps = 2/1012 (0%)
Strand=Plus/Plus
Query 433 ATGGAGAAGAGATTCAAGATATGGACATATAGAGAAGGAGAAGCTCCTCTGTTTCACAAG 492
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAGATTCAAGATATGGACATATAGAGAAGGAGAAGCTCCTCTGTTTCACAAA 60
Query 493 GGTCCACTCAACAACATTTACGCCATTGAAGGCCAATTCATGGACGAGATCGAGAACGGA 552
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTCCACTCAACAACATTTACGCTATTGAAGGCCAATTCATGGACGAGATCGAGAACGGA 120
Query 553 AACAGCCGTTTTAAGGCGGCTTCACCGGAGGAAGCCACTGTGTTCTACATCCCCGTAGGG 612
|||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 AACAGCCGTTACAAGGCGGCTTCACCGGAGGAAGCCACCGTGTTCTACATCCCTGTAGGG 180
Query 613 ATTGTCAATATCATACGCTTTGTCTATAGACCTTACACTAGCTATGCACGTGACCGTCTC 672
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGTCAATATCATACGCTTTGTCTATAGACCTTACACTAGCTATGCACGTGACCGTCTC 240
Query 673 CAAAACATTGTTAAAGACTACATCTCTCTCATCTCTAACCGTTACCCTTACTGGAATCGC 732
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAAACATTGTCAAAGACTACATCTCTCTCATCTCTAACCGTTACCCTTACTGGAATCGC 300
Query 733 AGTCGCGGTGCTGATCACTTCTTCCTCTCCTGTCACGATTGGGCACCTGATGTCTCAGCT 792
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTCGTGGTGCTGACCACTTCTTCCTCTCCTGTCACGATTGGGCACCTGATGTCTCAGCT 360
Query 793 GTGGATCCAGAATTATACAAGCATTTTATAAGAGCTCTCTGCAATGCCAATTCCTCCGAA 852
|||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 361 GTGGATCCAGAACTATACAGGCATTTTATCAGAGCTCTCTGCAATGCCAATGCCTCCGAG 420
Query 853 GGATTCACCCCAATGAGAGACGTTTCATTACCGGAAATCAACATTCCACACAGCCAATTA 912
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 421 GGATTCACCCCAATGAGAGACGTTTCATTACCTGAAATCAACATTCCCCACAGCCAATTA 480
Query 913 GGGTTTGTACACACCGGAGAACCGCCTCAAAACCGCAAACTCTTAGCATTCTTCGCGGGC 972
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGTTTGTACACACCGGAGAAGCGCCTCAAAACCGCAAACTCTTAGCATTCTTCGCGGGC 540
Query 973 GGTTCTCACGGAGATGTCCGAAAAATACTTTTCCAACACTGGAAAGAAAAAGACAAAGAC 1032
|||||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 541 GGTTCTCACGGAGAAGTCCGGAAAATACTTTTCGAACAATGGAAAGAAAAAGACAAAGAC 600
Query 1033 GTCCTTGTCTACGAGAATCTCCCCAAAACCATGAACTACACGAAAATGATGGACAAGGCA 1092
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GTCCTTGTCTACGAGTATCTCCCCAAAACCATGAACTACACGAAAATGATGGATAAGGCA 660
Query 1093 AAGTTTTGTTTATGTCCTAGCGGTTGGGAAGTGGCGAGTCCGAGAATTGTCGAGTCACTT 1152
||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 661 AAGTTTTGTTTGTGTCCGAGCGGTTGGGAAGTGGCGAGTCCAAGAATCGTGGAGTCTCTT 720
Query 1153 TACTCCGGCTGTGTTCCGGTCATCATAGCTGATTATTACGTCCTCCCGTTCAGCGACGTG 1212
||||| || || |||||||||||||| || |||| |||||| ||||||||||||||||||
Sbjct 721 TACTCGGGTTGCGTTCCGGTCATCATCGCGGATTCTTACGTTCTCCCGTTCAGCGACGTG 780
Query 1213 TTGAATTGGAAGACATTCTCGGTTCATATTCCAATATCAAAGATGCCTGACATAAAGAAG 1272
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 TTGAATTGGAAGACATTCTCGGTTCATATTCCAATATCGAAGATGCCTGACATAAAGAAG 840
Query 1273 ATTCTAGAAGCAATAACAGAAGAAGAGTACTTGA-ATATGCAAAGAAGAGTGCTTGAGGT 1331
||||||||||| ||| |||||||||||||||| | | ||||| || ||||||||||| ||
Sbjct 841 ATTCTAGAAGCGATATCAGAAGAAGAGTACTT-AGAGATGCAGAGGAGAGTGCTTGAAGT 899
Query 1332 TCGGAAACACTTTGTCATAAACAGACCATCAAAGCCATATGATATGTTGCATATGATCAT 1391
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 900 TCGGAAACACTTTGTGATAAACAGACCTTCAAAACCATATGATATGTTGCATATGATCAT 959
Query 1392 GCATTCTATTTGGTTACGGAGGCTTAATGTTCGAATCCCTCTTTCACAGTGA 1443
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 GCATTCTATTTGGTTACGGAGGCTTAATGTTCGAATCCCTCTTTCAGAGTGA 1011
> Ahg487944 jgi|Araly1|487944|fgenesh2_kg.6__1078__AT5G11120.1
Length=445
Score = 621 bits (336), Expect = 4e-177
Identities = 394/421 (94%), Gaps = 8/421 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATCTGACTTGTACGACACCGTTTTTGCTCTATCCATCACTCGTTATCATTCTC 60
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1 ATGGCGGATCTGACATGTACGACGCCGTTTTTGCTCTATCCATCACTCGTCATCATCCTC 60
Query 61 TTCTTCTACTCCATTAACCACCATAACCAAATATTCTCATCCGTCGTTGATGATGATCCT 120
||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 61 TTCTTCTACTCAATTAACCACCATAACCAAATATTCTCCTCCGTCCTCGATGATGATCCT 120
Query 121 TCTTGTCGTCTCTCGTCTTCTCCACAAGCTGTTTTCTCTTCCTTCAGAATCTTCCCTTTT 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 TCTTGTCGTCTCTCGTCTTCTCCACAAGCTGTTTTCTCTTCCTTGAGAATCTTCCCTTTC 180
Query 181 CGTTCTTCATCGTCTTGTCTCAATATCACTTCCAACAACAATTCGACGTCAGAAGTTGTG 240
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CGTTCTTCCTCTTCTTGTCTCAATATTACTTCCAACAACAATTCGACGTCAGAAGTTGTG 240
Query 241 GTGGTAGAAGAAGTTGATGAAGCGGTGGAGAGGATTGAAGAAGGTTTGGCGATGGCTAGA 300
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 241 GTGGTAGAAGAAGTTGATGAAGCGGTGGAGAGAATCGAAGAAGGTTTGGCGATGGCTAGA 300
Query 301 GCCGCCATAAGGAAGGCCGGAGAAAAGAATCTCCGTCGTGATCGTGATCGGACGAATAAT 360
|||||||||||||| ||||||||| ||||||||||||||||||| || || | | ||||
Sbjct 301 GCCGCCATAAGGAAAGCCGGAGAAGAGAATCTCCGTCGTGATCG-GA-CG-A--A-TAAT 354
Query 361 TCGGATGTGGGAGTCGTATCTAA-TGGATCTGTCTATCTCAATGCTTTTACTTTTCATCA 419
|||||||||||| ||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 355 TCGGATGTGGGATTCGTATC-AAGTGGATCTGTCTATCTCAACGCTTTTACTTTTCATCA 413
Query 420 G 420
|
Sbjct 414 G 414
> Ahg326421 jgi|Araly1|326421|fgenesh1_pm.C_scaffold_6001641
Length=1965
Score = 113 bits (61), Expect = 3e-24
Identities = 122/150 (81%), Gaps = 10/150 (7%)
Strand=Plus/Plus
Query 403 GCTTTTACTTTTCATCAGAGTCACAAAGAGATGGAGAAGAGATTC-AAGATATGGACATA 461
|||||| | |||||||| || || | ||||||||||||| |||| ||| | ||| ||
Sbjct 928 GCTTTTGCATTTCATCAAAGCCATATGGAGATGGAGAAGAAATTCAAAG-TGTGGGTGTA 986
Query 462 TAGAGAAGGAGA-AGCTCC-TCT-GTTTCACAAGGGTCCACTCAACAACATTTAC-GCCA 517
||||||||||| | | || | | | |||||| ||||||| | |||||||| ||| | ||
Sbjct 987 CAGAGAAGGAGACA-CACCGT-TAG-TTCACATGGGTCCAGTGAACAACATATACAG-CA 1042
Query 518 TTGAAGGCCAATTCATGGACGAGATCGAGA 547
||||||||||||||||||||||||||||||
Sbjct 1043 TTGAAGGCCAATTCATGGACGAGATCGAGA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5