BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11140.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940588 jgi|Araly1|940588|scaffold_601132.1 1037 0.0
> Ahg940588 jgi|Araly1|940588|scaffold_601132.1
Length=766
Score = 1037 bits (561), Expect = 0.0
Identities = 671/726 (92%), Gaps = 0/726 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTTATGTTCAGAGATCTCTCAACTTCATGTTCCTCATTGGAACAGTGCATACTCT 60
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAGTATATGTTCAGAGATCTCTCTACTTCATGTTCCTCATTGGAACAGTGCATACTCT 80
Query 61 GTTTTCAATGATGATAACGACAAAGACTCTGTTCTACTCTTCCCTGAGCTTCTTTTTTCT 120
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 81 GTTTTCAATGATGATGACGACAAAGACTCTGTTTTACTCTTCCCTGAGCTCCTTTTTTCT 140
Query 121 CCATTGAACAAGGCTCTTGTGATCACAACCTCTGATTCGTGGGACGTTGTCTCCGTCGGA 180
||||||| |||| |||||||||||| ||||||||||||||| |||||||| || ||||||
Sbjct 141 CCATTGAGCAAGTCTCTTGTGATCAAAACCTCTGATTCGTGCGACGTTGTGTCTGTCGGA 200
Query 181 GAATACAAAGTCAAAGCTAGTCTCTCCTCCACTCTTCAAAGCATTTTCGACAAGTATGGA 240
||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 201 GAATACAAAGTCAAAGCTAGTCTATCCTCTACTCTTCAAAGCATATTCGATAAGTATGGA 260
Query 241 GACATCACATCGAATTCCAAGCTCCAATCACTCTCCACACGAACATATCACCTCGAGACA 300
||||||||||| ||||||||||| || || || || ||||||| |||||||||||||||
Sbjct 261 GACATCACATCAAATTCCAAGCTACAGTCTCTTTCAACACGAATATATCACCTCGAGACT 320
Query 301 CTAGCGGAGGTTGTTATCGAACTCCAGTCAACGCCTCTACGTCGGTTATCTGAATCACGG 360
||||| |||||||||||||||||||||||||||||||| ||| || |||||||| |||||
Sbjct 321 CTAGCCGAGGTTGTTATCGAACTCCAGTCAACGCCTCTGCGTAGGCTATCTGAAACACGG 380
Query 361 GCCACTGAGATTCTAGCAATCGTTGATGACATAGAAACGGCAAAGATCCGAGTAGGTTGG 420
|||| |||||||||||| |||||| ||||||| || ||||||||||||||||||||||||
Sbjct 381 GCCATTGAGATTCTAGCGATCGTTAATGACATTGAGACGGCAAAGATCCGAGTAGGTTGG 440
Query 421 CTCCGGTCCGTTCTTGAGGAGGTTCTTGAAGCTACAAGGTATTTTGACAGATGCGAAATG 480
|||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 441 CTCCGGTCCGTTCTTGAGGAGGTTCTTGAAGCCACAAGGTACTTTGACAGACGCGAAATG 500
Query 481 GCAGTTATGGAGAAAAAGGCCGGCGAGCACCGTTTATTGCTTGCAAAGCAAGAAATGGAA 540
||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||
Sbjct 501 GCAGTTATGGAGAAAAAGGCCTGTGAGCACGGTTTGTTGCTTGCAAAGCAAGAAATGGAA 560
Query 541 CTGAGTTTGAAGAAGCTTGCAGAGAAAGAGAAGGAGATGAAAGAGTTTAGGGAGAAATTA 600
||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |
Sbjct 561 GTGAGTTTGAAGAAGCTTGCAGAGAAGGAGAAGGAGATGAATGAGTTTAGGGAGAGACTG 620
Query 601 ATGAAGACAACAGGGAAATTGGGTTCGCTGGAGATGAAACGGACGTGCCTTGATAAGAGA 660
||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 621 ATGGAGACAACAGGGAAATTGGGTTCGTTGGAGATGAAGCGGACGTGTCTTGATAAGAGA 680
Query 661 TTAGTGTTTCTGAGATCTAAAGTCGAGAAGTTTCAAGGTCAATCTGTTTTTCAGGACATT 720
|| |||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||
Sbjct 681 TTTGTGTTTCTGAGATCTAAAGTCGAGAAGTTTCAAGATCAATCTGTTTTTAACGACGTT 740
Query 721 TTGTGA 726
||||||
Sbjct 741 TTGTGA 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5