BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11150.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487947 jgi|Araly1|487947|fgenesh2_kg.6__1081__AT5G11150.1 1380 0.0
> Ahg487947 jgi|Araly1|487947|fgenesh2_kg.6__1081__AT5G11150.1
Length=1125
Score = 1380 bits (747), Expect = 0.0
Identities = 1020/1139 (90%), Gaps = 70/1139 (6%)
Strand=Plus/Plus
Query 85 CTCAAAATCATTTCAATAATTCAATTTCAGATGTATGGTGAT--GCTTCTTTGATTACAA 142
|||||||||||| ||| ||||||||||||||||||||||| | | | ||||||||||||
Sbjct 53 CTCAAAATCATTGCAACAATTCAATTTCAGATGTATGGTGGTGAGATGCTTTGATTACAA 112
Query 143 ATCGGCGTTGAACAATTCTCCGATTTTACACTCTAATCGAATCACTTTGGGGTGTTTTGT 202
|||||||||||||||||||||||||||||||| |||||||| |
Sbjct 113 GTCGGCGTTGAACAATTCTCCGATTTTACACTCCAATCGAAT--C--------------- 155
Query 203 TAATCGCTGTTCTCAAGATCTGAGATTTACAGGGAGAAGTGAGCTGGAACAAGGTGCCGG 262
|||| ||||||||||||||||||||||||| ||||||||| | | | ||
Sbjct 156 --ATCGTTGTTCTCAAGATCTGAGATTTACAGAGAGAAGTGA----G--C----T---GG 200
Query 263 AGTAGATGGCGATCATATTTGCGTTGGTGGCTCGTGGAACGGTGGTGTTATCGGAGTTTA 322
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 201 AGTAGATGGCGATCATATTTGCGTTGGTGGCTCGAGGAACGGTGGTGTTATCGGAGTTTA 260
Query 323 GCGCTACTTCGACTAACGCTAGCTCAATCTCGAAGCAGATTTTGGAGAAGTTGCCTGGAA 382
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 261 GCGCTACTTCGACTAACGCTAGCTCAATCGCGAAGCAGATTTTGGAGAAGTTGCCTGGAA 320
Query 383 ACGATAGCGATAGCCATATGTCTTACTCTCAGGATCGCTACATCTTCCATGTGAAACGAA 442
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 321 ACGATAGCGATAGCCATATGTCTTACTCTCAGGATCGGTACATCTTCCATGTGAAACGAA 380
Query 443 CAGATGGTCTTACCGTTCTCTGTATGGCCGACGAAACCGCCGGAAGGAATATTCCGTTTG 502
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 381 CCGATGGTCTTACCGTTCTCTGTATGGCCGATGAAACCGCCGGAAGGAATATTCCGTTTG 440
Query 503 CGTTTTTGGATGATATTCATCAGAGGTTTGTGAAAACATATGGCCGAGCTATTCATTCAG 562
||||||||||||||||||||||| | ||||||| ||| |||||||| || |||||||| |
Sbjct 441 CGTTTTTGGATGATATTCATCAGCGATTTGTGAGAACGTATGGCCGTGCGATTCATTCCG 500
Query 563 CTCAAGCTTATTCCATGAATGATGAATTTTCAAGAGTTCTGAGTCAACAGATGGAGTTTT 622
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |
Sbjct 501 CTCAAGCTTATTCCATGAATGATGAATTTTCAAGAGTTGTGAGTCAGCAGATGGAATACT 560
Query 623 ATTCCAATGATCCTAATGCAGACAGGATGAGCAGAATCAAAGGTGAAATGAGTCAGGTTC 682
||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 561 ATTCCAATGATCCAAATGCAGACAGGATGAGCAGAATTAAAGGTGAAATGACTCAGGTTC 620
Query 683 GAAATGTGATGATTGAGAATATTGATAAAGTTTTGGATAGAGGGGAGCGTTTGGAGTTGC 742
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 621 GAAATGTGATGATTGAGAATATTGATAAAGTCTTGGATAGAGGGGAGCGCTTGGAGTTGC 680
Query 743 TAGTTGATAAAACCGAAAATATGCAAGGCAACACTTTTCGTTTCAGAAAGCAAGCTCGTC 802
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 681 TGGTTGATAAAACCGAAAATATGCAAGGCAACACTTTTCGTTTCAGAAAGCAAGCTCGCC 740
Query 803 GTTACAGAACCATTATGTGGTGGAGAAATGTCAAGCTTACAATTGCTCTGATACTTGTAC 862
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 741 GTTACAGAACCATTATGTGGTGGAGGAATGTCAAGCTTACGATTGCTCTGATACTTGTAC 800
Query 863 TAGCTTTGGTTGTGTACATCGCGATGGCCTTTGTTTGCCATGGGCCAAGTCTTCCTTCTT 922
| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 801 TCGCATTGGTTGTATACATCGCGATGGCCTTTGTTTGCCATGGGCCAAGTCTTCCTTCAT 860
Query 923 GTTTCAAGTAAGAAGACATTCTCTTATCTTCTTCACCTTTCCCTTCTTGGGAATT-ATCA 981
|||||||||||||||||| | |||||||||| ||| ||||||||||||||||| ||||
Sbjct 861 GTTTCAAGTAAGAAGACAGTATCTTATCTTC---ACCATTCCCTTCTTGGGAATTTATCA 917
Query 982 GACTCTGCTTCGATTTTGGAATGTGAGATTATATGCGTTTGTCTAAAATGTGTGTTTATG 1041
||||||| ||||||||||||||||||||| || || || || |||||||||||||||||
Sbjct 918 GACTCTGGTTCGATTTTGGAATGTGAGAT-AT--GCCTT-GTGTAAAATGTGTGTTTATG 973
Query 1042 TGATCTTTCAATTT-CAGCTTCTGCTTATTGCTTTGAATTACAGAGTCGATTATTTATTT 1100
|| |||||||| | |||||||||||||||||||||||||| | | ||||
Sbjct 974 TGCTCTTTCAAATAGCAGCTTCTGCTTATTGCTTTGAATTA-----T---T-ATTT---- 1020
Query 1101 GTAAGTGTGATATTTCACTGTTAATGATCATCCCCTGTCTGTTTGCAATTTATGCTGCGG 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTAAGTGTGATATTTCACTGTTAATGATCATCCCCTGTCTGTTTGCAATTTATGCTGCGG 1080
Query 1161 CGTTAAAAGTTGTATTAAATGATGACGTTTTTAGCTTTTGCTTGATCTGTGAAGAATTT 1219
|||||| | || || ||||||||||||||||| ||||||||||||||||
Sbjct 1081 CGTTAA--G----AT-----GA---CGTTTTTAGCTTTTGCTGGATCTGTGAAGAATTT 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5