BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11210.1
Length=2490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325650 jgi|Araly1|325650|fgenesh1_pm.C_scaffold_6000870 3770 0.0
Ahg893036 jgi|Araly1|893036|Al_scaffold_0006_1032 2972 0.0
> Ahg325650 jgi|Araly1|325650|fgenesh1_pm.C_scaffold_6000870
Length=2754
Score = 3770 bits (2041), Expect = 0.0
Identities = 2339/2481 (94%), Gaps = 28/2481 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAGACAAGGATTGTCCTCAACGTCCGAGACTCCAAACAAACTGTTGTTGGTG 60
||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 200 ATGGCTTCAAGACAAGGATTGTCCTCAACATCCGCGACTCTAAACAAACTGTTGTTGGTG 259
Query 61 CT---GC--C-GC--T-T-C-------AGAAGAGGGAAGTGGTGGCCATTATTGGACCAG 103
|| || | || | | | |||||||||||||||||||||||||||||||||
Sbjct 260 CTGCCGCTTCAGCTTTATACTTGATAAAGAAGAGGGAAGTGGTGGCCATTATTGGACCAG 319
Query 104 GGACTTCAATGCAAGCTCCATTTTTAATCAACCTTGGAAACCAATCTAAAGTTCCAATCA 163
||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 320 GGAATTCAATGCAAGCTCCATTTCTAATCAACCTCGGAAACCAAACTAAAGTTCCAATCA 379
Query 164 TTTCATTCTCTGCAACAAGCCCTCTTCTTGATTCCCTCCGTAGTCCATATTTCATCAGAG 223
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 380 TTTCATTCTCTGCAACAAGTCCTCTTCTTGATTCTCTCCGTAGTCCGTATTTCATCAGAG 439
Query 224 CCACTCACGACGATTCGTCTCAAGTCCAAGCCATTAGCGCCATCATAGAGTCATTTAGAT 283
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 440 CCACACACGACGATTCGTCTCAAGTCCAAGCCATTAGCGCCATCATAGAGTCGTTTAGAT 499
Query 284 GGAGAGAAGTTGTGCCTATATATGTAGACAATGAGTTCGGAGAAGGTATTCTTCCTAACT 343
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 500 GGAGAGAAGTTGTGCCTATTTATGTGGACAATGAGTTCGGAGAAGGTATTCTTCCTTACT 559
Query 344 TAGTTGATGCTTTTCAAGAGATTAATGTTCGTATCCGATACCGAAGTGCCATCTCATTAC 403
|||||||||||||||||||||| || |||| |||||||||||||||||||| ||| |||
Sbjct 560 TAGTTGATGCTTTTCAAGAGATCAACGTTCACATCCGATACCGAAGTGCCATATCAGTAC 619
Query 404 ATTACTCTGATGATCAAATCAAGAAAGAGCTTTACAAACTAATGACCATGCCTACTAGGG 463
||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 620 ATTCCTCTGATGATCAAATCAAGAAAGAGCTTTACAAACTTATGACCATGCCCACTAGGG 679
Query 464 TTTTTATCGTGCACATGCTGCCTGATCTCGGGTCAAGACTCTTTTCGATAGCAAAAGAGA 523
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 680 TTTTTATCGTGCACATGCTTCCTGATCTCGGATCAAGGCTCTTTTCGATAGCAAAAGAGA 739
Query 524 TTGATATGCTGAGCAAAGGATATGTATGGATAGTCACAAATGGTATAGCTGATCTCATGA 583
||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 740 TTGGTATGATGAGCAAAGGATATGTATGGATCGTCACAAATGGTATAGCTGATCTCATGA 799
Query 584 GTATAATGGGGGAATCAAGCTTGGTGAATATGCATGGTGTCTTGGGCGTCAAGACATATT 643
|| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 800 GTGTAATGGGGGAACCAGGCTTGGAGAATATGCATGGTGTCTTGGGCGTCAAGACATATT 859
Query 644 TTGCAA-AATCCAAAGAGCTACTACATCTTGAAGCTCGTTGGCAAAAAAGATTCGGAGGA 702
|||||| || | ||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 860 TTGCAAGAA-CAAAAGAGCTAATGTATCTTGAAGCTCGTTGGCGAAAAAGATTCGGAGGA 918
Query 703 GAAGAGCTGAACAACTTTGCATGTTGGGCTTATGATGCTGCCACAGCACTTGCAATGTCA 762
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 919 GAAGAGCTAAACAACTTTGCATGTTGGGCTTATGATGCTGCAACAGCACTTGCAATGTCA 978
Query 763 GTTGAGGAAATTAGGCACGTAAACATGAGTTTCAACACGACCAAAGAAGACACTTCAAGA 822
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 979 GTTGAGGAAATTAGGCACGTAAACATGAGTTTCAACACGACCCAAGAAAACACTTCAAGA 1038
Query 823 GATGATATTGGGACTGATCTTGATGAACTCGGCGTTGCTCTATCTGGTCCCAAGCTTCTT 882
||||||||||| |||||||||||||| ||||| ||||||| ||||||||||| ||||||
Sbjct 1039 GATGATATTGGAACTGATCTTGATGATCTCGGATTTGCTCTCTCTGGTCCCAAACTTCTT 1098
Query 883 GATGCCTTGTCAACAGTCAGTTTCAAAGGTGTTGCCGGGAGATTTCAGCTAAAAAACGGA 942
| || || |||||||||||||||||||| ||| |||||||||||||||| |||||||||
Sbjct 1099 CAAGCGTTATCAACAGTCAGTTTCAAAGGCGTTTCCGGGAGATTTCAGCTGAAAAACGGA 1158
Query 943 AAGCTAGAGGCGACGACTTTCAAGATTATCAATATAGAGGAAAGCGGTGAAAGAACGGTT 1002
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 AATCTAGAGGCGACGACTTTCAAGATTATCAATATAGAGGAAAGCGGTGAAAGAACGGTT 1218
Query 1003 GGATTTTGGAAATCAAAAGTAGGATTAGTAAAGAGCTTAAGAGTAG-ATAAAGTGTCTCA 1061
|||||||||||||||||||| ||||||||| ||||| ||||||| | || ||||||| ||
Sbjct 1219 GGATTTTGGAAATCAAAAGTGGGATTAGTAGAGAGCCTAAGAGT-GCATCAAGTGTCACA 1277
Query 1062 CAGCTCCCGTCGCCTTAGACCGATAATATGGCCTGGTGACACTATTTTTGTGCCTAAAGG 1121
||| || |||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 1278 CAGATCGCGTCGCCTTAGACCAATTATATGGCCAGGGGACACTATTTTTGTGCCTAAAGG 1337
Query 1122 TTGGGAATTCCCAACAAACGCAAAGAAGCTGCGAATAGCAGTTCCAAAGAAGGATGGTTT 1181
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1338 TTGGGAATTCCCAACAAACGCAAAGAAGCTGCGAATAGCGGTTCCAAAGAAGGATGGTTT 1397
Query 1182 CAACAATTTTGTTGAGGTAACCAAGGATGAAAATACTAATGTTCCAACGGTCACCGGGTT 1241
|||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||
Sbjct 1398 CAACAATTTTGTTGAGGTAACCAAGGATGAAAATGCTAATGTTCCAAGGGTCACTGGGTT 1457
Query 1242 TTGCATAGATGTTTTCAACACGGTAATGAGCCAAATGCCATATGCTGTCTCCTATGAGTA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TTGCATAGATGTTTTCAACACGGTAATGAGCCAAATGCCATATGCTGTCTCCTATGAGTA 1517
Query 1302 CATCCCCTTTGATACGCCTGATGGAAAACCTCGTGGAAGTTACGATGAAATGGTTTATAA 1361
| |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1518 CGTCCCCTTTGAGACTCCTGATGGAAAACCTAGTGGAAGTTACGATGAAATGGTTTATAA 1577
Query 1362 TGTGTTTCTTGGGGAGTTTGATGGAGCTGTAGGTGATACAACAATTTTGGCTAATCGGTC 1421
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1578 TGTGTTTCTTGGGGAGTTTGATGGAGCTGTAGGTGATACAACAATCTTGGCAAATCGGTC 1637
Query 1422 GCATTATGTTGATTTCGCGTTGCCATACTCGGAGACCGGAATTGTATTCCTTGTACCAGT 1481
||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 1638 GCATTATGTCGATTTCGCGTTGCCATACTCAGAGACCGGAATTGTATTCGTTGTACCTGT 1697
Query 1482 CAAGGATGGGAAAGAAAAAGGAGAATGGGTCTTCTTAAAGCCTTTAACAAAGGAGCTATG 1541
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1698 CAAGGATGGGAAAGAAAAAGGAGAATGGGTCTTCTTAAAGCCTTTGACAAAGGAGCTATG 1757
Query 1542 GTTGGTCACTGCTGCTTCTTTTCTCTACATTGGAATCATGGTTTGGATTTTTGAGTACCA 1601
|||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1758 GTTGATTACTGCTGCTTCTTTTCTCTACATTGGAATTATGGTTTGGATTTTTGAGTACCA 1817
Query 1602 AGCAGATGAGGAGTTCAGGGAACAGATGATAATTGATAAAATATCTAGTGTGTTCTACTT 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 AGCAGATGAGGAGTTCAGGGAACAGATGATAATTGATAAAATATCTAGTGTGTTCTACTT 1877
Query 1662 CTCGTTTTCGACTCTCTTTTTCGCACACAGGAGGCCATCAGAGAGCTTTTTTACAAGGGT 1721
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1878 CTCGTTTTCGACTCTCTTTTTCGCACACAGGAGGCCATCAGAGAGCTTTTTCACAAGGGT 1937
Query 1722 TCTTGTTGTGGTTTGGTGCTTTGTGTTGCTAATTCTGACTCAGAGCTACACAGCAACACT 1781
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1938 TCTTGTTGTGGTTTGGTGCTTTGTGTTGTTAATTCTGACTCAGAGCTACACAGCAACATT 1997
Query 1782 GACATCGATGCTGACAGTTCAAGAGCTTCGACCAACAGTGAGACACATGGATGATTTGAG 1841
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1998 GACATCTATGCTGACGGTTCAAGAGCTTCGACCAACAGTGAGACACATGGATGATCTGAG 2057
Query 1842 GAAGAGCGGAGTGAACATTGGATATCAAACTGGTTCGTTTACATTCGAAAGGCTGAAACA 1901
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2058 GAAGAGCGGAGTGAACATTGGATATCAAACTGGTTCGTTTACATTTGAAAGGCTGAAACA 2117
Query 1902 AATGCGTTTCGATGAATCGAGGTTAAAGACATATAATTCTCCTGAAGAGATGCGTGAACT 1961
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2118 AATGCGTTTCGATGAATCGAGGTTAAAGACATATAATTCTCCTGAAGAAATGCGTGAACT 2177
Query 1962 TTTTCTTCACAAGAGCAGCAATGGCGGGATTGATGCTGCGTTCGATGAGGTCGCTTATAT 2021
||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2178 TTTTCTTAAAAAGAGCAGCAATGGCGGGATTGATGCTGCATTCGATGAAGTCGCTTATAT 2237
Query 2022 CAAGCTTTTCATGGCTAAGTATTGCTCAGAGTATTCCATCATCGAGCCTACCTTTAAGGC 2081
||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 2238 CAAACTTTTCATGGCTAAGTATTGCTCACAGTATTCCATAATCGAGCCTACCTTTAAGGC 2297
Query 2082 TGATGGCTTTGGCTTTG----CATTTCCACTAGGATCTCCATTGGTGTCAGATATTTCAA 2137
||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 2298 TGATGGCTTTGGCTTTGTAAGCATT-CCACTAGGATCTCCATTGGTATCAGATATTTCAA 2356
Query 2138 GACAGATCTTGAACATAACAGAGGGAGATGCCATGAAAGCTATAGAGAACAAGTGGTTCC 2197
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2357 GACAGATCTTGAACATAACAGAGGGAGATACCATGAAGGCTATAGAGAACAAGTGGTTCC 2416
Query 2198 TTGGAGAAAAACATTGTCTGGACTCGACTACATCAGATTCTCCAATCCAGCTCGACCACC 2257
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2417 TTGGAGAAAAACATTGTCTGGACTCGACTACATCAGATTCTCCAATCCAGCTCGATCATC 2476
Query 2258 ACAGCTTTGAAGCTCTATTTCTGATCGTCTTTGTTGTTTCTGTGATTCTACTCTTACTCA 2317
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2477 ACAGCTTTGAAGCTCTATTTCTGATCGTCTTTGTTGTTTCTATCATTCTACTCTTACTCA 2536
Query 2318 TGTTGGCTTCTAGAGGATACCAAGAGAGACAACACAATGCTTCACCCAATCTACCAAATG 2377
|||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2537 TGTTGGCTTCAAGAAGATACCAAGAGAGACAACGCAATGCTTCACTCAATCTACCAAATG 2596
Query 2378 ATCAAGCCAATGCAGCTCAAGAAGAA-GTCAATGAAGAAGGTAATGTTGGAGATCATATT 2436
||||||||| |||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 2597 ATCAAGCCACTGCAGCTCAAGAAGAAAG-CAATGAAGAAGGTAATTTTGGAGATCATATT 2655
Query 2437 GTGGAAGTCGACACAGCTTTG 2457
|||||||||||||||||||||
Sbjct 2656 GTGGAAGTCGACACAGCTTTG 2676
> Ahg893036 jgi|Araly1|893036|Al_scaffold_0006_1032
Length=2880
Score = 2972 bits (1609), Expect = 0.0
Identities = 2134/2383 (90%), Gaps = 53/2383 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAGACAAGGATTGTCCTCAACGTCCGAGACTCCAAACAAACTGTTGTTGGTG 60
||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||
Sbjct 203 ATGGCTTCAAGACAAGGATTGTCCTCAACATCCGAGATTCCAAACGAACTGTTATTGGTG 262
Query 61 CT---GC--C-GC--T-T-C-------AGAAGAGGGAAGTGGTGGCCATTATTGGACCAG 103
|| || | || | | | |||||||||||||||||||||||||||||||||
Sbjct 263 CTGCAGCTTCAGCTTTATACTTGATAAAGAAGAGGGAAGTGGTGGCCATTATTGGACCAG 322
Query 104 GGACTTCAATGCAAGCTCCATTTTTAATCAACCTTGGAAACCAATCTAAAGTTCCAATCA 163
||| |||||||||||||||||||||||||||||| ||||| |||||| ||||||| || |
Sbjct 323 GGAATTCAATGCAAGCTCCATTTTTAATCAACCTCGGAAATCAATCTCAAGTTCCCATAA 382
Query 164 TTTCATTCTCTGCAACAAGCCCTCTTCTTGATTCCCTCCGTAGTCCATATTTCATCAGAG 223
||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 383 TTTCATTCTCTGCGACAAGCCCTGTTCTTGATTCTCTCCGTAGTCCATATTTCATCAGAG 442
Query 224 CCACTCACGACGATTCGTCTCAAGTCCAAGCCATTAGCGCCATCATAGAGTCATTTAGAT 283
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 443 CCACACACGACGATTCGTCTCAAGTCCAAGCCATTAGCGCCATCATAGAGTCGTTTAGAT 502
Query 284 GGAGAGAAGTTGTGCCTATATATGTAGACAATGAGTTCGGAGAAGGTATTCTTCCTAACT 343
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 503 GGAGAGAAGTTGTGCCTATTTATGTGGACAATGAGTTCGGAGAAGGTATTCTTCCTTACT 562
Query 344 TAGTTGATGCTTTTCAAGAGATTAATGTTCGTATCCGATACCGAAGTGCCATCTCATTAC 403
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||
Sbjct 563 TAGTTGATGCTTTTCAAGAGATCAACGTTCGTATCCGATACCGAAGTGCCATATCAGCAC 622
Query 404 ATTACTCTGATGATCAAATCAAGAAAGAGCTTTACAAACTAATGACCATGCCTACTAGGG 463
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 623 ATTCCTCTGATGATCAAATCAAGAAAGAGCTTTACAAACTAATGACCATGCCCACTAGGG 682
Query 464 TTTTTATCGTGCACATGCTGCCTGATCTCGGGTCAAGACTCTTT-TCGATAGCAAAAGAG 522
||||| ||||||||||| |||||||||| || || || || ||| |||||||||||||||
Sbjct 683 TTTTTGTCGTGCACATGTTGCCTGATCTTGGATCGAGGCT-TTTCTCGATAGCAAAAGAG 741
Query 523 ATTGATATGCTGAGCAAAGGATATGTATGGATAGTCACAAATGGTATAGCTGATCTCA-T 581
|||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| | |
Sbjct 742 ATTGGTATGATGAATAAAGGATATGTATGGATTGTCACAAATGGTATAGCTGATC-AACT 800
Query 582 GAGTATAATGGGGGAATCAAGCTTGGTGAATATGCATGGTGTCTTGGGCGTCAAGACATA 641
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 801 GAGTCTAAAGGGGGAATCAAGCTTGGAGAATATGCATGGTGTCTTGGGCGTCAAGACATA 860
Query 642 TTT-TGCAAAATCCAAAGAGCTACTACATCTTGAAGCTCGTTGGCAAAAAAGATTCGGAG 700
||| | ||| ||| ||||||||| | |||||||| ||||||||| ||||||||||||||
Sbjct 861 TTTCT-CAAGATCAAAAGAGCTAATGTATCTTGAAACTCGTTGGCGAAAAAGATTCGGAG 919
Query 701 GAGAAGAGCTGAACAACTTTGCATGTTGGGCTTATGATGCTGCCACAGCACTTGCAATGT 760
|||||||| | ||||| |||| |||||||||||||||||| |||||||||||||||||||
Sbjct 920 GAGAAGAGATAAACAATTTTGAATGTTGGGCTTATGATGCGGCCACAGCACTTGCAATGT 979
Query 761 CAGTTGAGGAAATTAGGCACGTAAACATGAGTTTCAACACGACC-AAAGAAGACACTTCA 819
|| |||||||||| || | ||| ||||||||||||| | |||| ||| || ||||||||
Sbjct 980 CAATTGAGGAAATCAGTAATGTACACATGAGTTTCAATAAGACCAAAACAA-ACACTTCA 1038
Query 820 AGAGATGATATTGGGACTGATCTTGATGAACTCGGCGTTGCTCTATCTGGTCCCAAGCTT 879
||||| ||||| || || || |||||||| || ||||||||||| ||||||||||| ||
Sbjct 1039 AGAGAAGATATAGGCACGGACCTTGATGATCTTGGCGTTGCTCTCTCTGGTCCCAAAATT 1098
Query 880 CTTGATGCCTTGTCAACAGTCAGTTTCAAAGGTGTTGCCGGGAGATTTCAGCTAAAAAAC 939
||| | || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 CTTCAAGCATTGACAACAGTCAGTTTCAAAGGTGTTGCCGGGAGATTTCAGCTAAAAAAC 1158
Query 940 GGAAAGCTAGAGGCGACGACTTTCAAGATTA-TCAATATAGAGGAAAGCGGTGAAAGAAC 998
|||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||
Sbjct 1159 GGAAAGCTAGAGGCGAAGACTTTCAAGA-TAGTCAATATAGAGGAAAGCGGGGAAAGAAC 1217
Query 999 GGTTGGATTTTGGAAATCAAAAGTAGGATTAGTAAAGAGCTTAAGAG----T-----AG- 1048
||||||||||||| ||||||||||||| |||| |||||| |||||| | ||
Sbjct 1218 AGTTGGATTTTGGATATCAAAAGTAGGACTAGTGAAGAGCCTAAGAGTTAATCAAACAGA 1277
Query 1049 -A-TAAAGTGTCTCACAGCTCCCGTCGCCTTAGACCGATAATATGGCCTGGTGACACTAT 1106
| |||| | || |||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct 1278 CATTAAAATATCACACAGCTCACGCCGCCTTAGACCGATTATATGGCCTGGGGACACTAT 1337
Query 1107 TTTTGTGCCTAAAGGTTGGGAATTCCCAACAAACGCAAAGAAGCTGCGAATAGCAGTTCC 1166
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1338 TTTTGTGCCTAAAGGTTGGGAATTCCCAACAAACGCAAAGAAGCTGCGAATAGCGGTTCC 1397
Query 1167 AAAGAAGGATGGTTTCAACAATTTTGTTGAGGTAACCAAGGATGAAAATACTAATGTTCC 1226
||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||
Sbjct 1398 AAAGAAGGATGGTTTCAACAATTTTGTGGAGGTAAAAAAGGATGCAAATACTAATGCTCC 1457
Query 1227 AACGGTCACCGGGTTTTGCATAGATGTTTTC-AACACGGTAATGAGCCAAATGCCATATG 1285
|||| |||||||||||||||||||||||||| || |||| |||||| |||||||||||||
Sbjct 1458 AACGATCACCGGGTTTTGCATAGATGTTTTCGAA-ACGGCAATGAGACAAATGCCATATG 1516
Query 1286 CTGTCTCCTATGAGTACATCCCCTTTGATACGCCTGATGGAAAACCTCGTGGAAGTTACG 1345
||||| |||||||||||||||||||||| || |||||||||||| | |||||||||||||
Sbjct 1517 CTGTCCCCTATGAGTACATCCCCTTTGAAACTCCTGATGGAAAATCGCGTGGAAGTTACG 1576
Query 1346 ATGAAATGGTTTATAATGTGTTTCTTGGGGAGTTTGATGGAGCTGTAGGTGATA-CAACA 1404
| |||||| ||||| |||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1577 ACGAAATGATTTATCATGTGTTTCTTGGGGAGTTTGATGGAGCTGTAGGGGATATCA-CA 1635
Query 1405 ATTTTGGCTAATCGGTCG-CATTATGTTGATTTCGCGTTGCCATACTCGGAGACCGGAAT 1463
|| || ||||||||||| ||| | || ||||| || ||||||||||||||||| || ||
Sbjct 1636 ATCTTAGCTAATCGGTCTTCAT-ACGTCGATTTTGCATTGCCATACTCGGAGACGGGTAT 1694
Query 1464 TGTATTCCTTGTACCAGTCAAGGATGGGAAAGAAAAAGGAGAATGGGTCTTCTTAAAGCC 1523
|||| | |||| || |||||||||| || ||||||||| ||||||| |||||||||||
Sbjct 1695 TGTAGTGGTTGTGCCGGTCAAGGATGAGAGGGAAAAAGGAAAATGGGTTTTCTTAAAGCC 1754
Query 1524 TTTAACAAAGGAGCTATGGTTGGTCACTGCTGCTTCTTTTCTCTACATTGGAATCATGGT 1583
||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1755 TTTAACATGGGAGCTATGGGTCCTCACTGCTGCTTCTTTTCTCTACATTGGAATCATGGT 1814
Query 1584 TTGGATTTTTGAGTACCAAGCAGATGAGGAGTTCAGGGAACAGATG-ATAATTGATAAAA 1642
|||||||||||||||||||||| ||||||||||||||| ||||| | || ||| ||||||
Sbjct 1815 TTGGATTTTTGAGTACCAAGCAAATGAGGAGTTCAGGGGACAGA-GCATTATTAATAAAA 1873
Query 1643 TATCTAGTGTGTTCTACTTCTCGTTTTCGACTCTCTTTTTCGCACACAGGAGGCCATCAG 1702
|||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1874 TATCTAATGTGTTCTACTTCTCATTTTCGACTCTCTTTTTCGCACACATGAGGCCATCAG 1933
Query 1703 AGAGCTTTTTTACAAGGGTTCTTGTTGTGGTTTGGTGCTTTGTGTTGCTAATTCTGACTC 1762
||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1934 AGAGCATTTTCACAAGAGTTCTTGTGGTGGTTTGGTGCTTTGTGTTGCTTATTCTTACTC 1993
Query 1763 AGAGCTACACAGCAACACTGACATCGATGCTGACAGTTCAAGAGCTTCGACCAACAGTGA 1822
||||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 1994 AGAGCTACACAGCAACATTGACATCGATGCTGACGGTTCAAGAACTTAGACCAACAGTGA 2053
Query 1823 GACACATGGATGATTTGAGGAAGAGCGGAGTGAACATTGGATATCAAACTGGTTCGTTTA 1882
|||||||||| ||| |||||||||||||||| ||||| ||||| |||| |||||||||||
Sbjct 2054 GACACATGGACGATCTGAGGAAGAGCGGAGTTAACATCGGATACCAAAGTGGTTCGTTTA 2113
Query 1883 CATTCGAAAGGCTGAAACAAATGCGTTTCGATGAATCGAGGTTAAAGACATATAATTCTC 1942
||||||||||||||||||||||| ||| | | ||||||||||||||||| ||| || |||
Sbjct 2114 CATTCGAAAGGCTGAAACAAATGGGTTACAAAGAATCGAGGTTAAAGACTTATGATACTC 2173
Query 1943 CTGAAGAGATGCGTGAACTTTTTCTTCACAAGAGCAGCAATGGCGGGATTGATGCTGCGT 2002
|| | || |||| ||||||||||||| | |||||||||||||| || ||||||||||| |
Sbjct 2174 CTCAGGAAATGCATGAACTTTTTCTTAAAAAGAGCAGCAATGGTGGTATTGATGCTGCAT 2233
Query 2003 TCGATGAGGTCGCTTATATCAAGCTTTTCATGGCTAAGTATTGCTCAGAGTATTCCATCA 2062
||||||| ||| ||||| ||||||||||||||||||| ||||||||| | |||||||| |
Sbjct 2234 TCGATGAAGTCCCTTATGTCAAGCTTTTCATGGCTAAATATTGCTCAAAATATTCCATTA 2293
Query 2063 TCGAGCCTACCTTTAAGGCTGATGGCTTTGGCTTTGCATTTCCACTAGGATCTCCATTGG 2122
||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||
Sbjct 2294 TCGAGCCTACCTTTAAGGCTGATGGCTTTGGCTTTGCCTTTCCATTGGGATCTCCTTTGG 2353
Query 2123 TGTCAGATATTTCAAGACAGATCTTGAACATAACAGAGGGAGATG-CCATGAAAGCTATA 2181
|| ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 2354 TGCCAGATATTTCAAGACAGATCTTGAATATAACAGAGGGAGA-GACCATGAAAGCTATA 2412
Query 2182 GAGAACAAGTGGTTCCTTGGAGAAAAACATTGTCTGGACTCGACTACATCAGATTCTCCA 2241
||||| |||||| |||||||||||||||||||||| ||||| || ||||| |||||||||
Sbjct 2413 GAGAATAAGTGGCTCCTTGGAGAAAAACATTGTCTAGACTCAACCACATCGGATTCTCCA 2472
Query 2242 ATCCAGCTCGACCACCACAGCTTTGAAGCTCTATTT-CTGATCGTCTTTGTTGTTTCTGT 2300
|||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 2473 ATCCGGCTCGATCACCACAGCTTTGAAGCTCTATTTAC-GATCGTCTTTGTTGTTTCTAT 2531
Query 2301 GATTCTACTCTTA-CTCATGTTGGCTTCTAGAGGATACCAAGA 2342
| ||||||||||| | |||||||| || |||| ||||||||||
Sbjct 2532 GCTTCTACTCTTAGC-CATGTTGGTTTATAGAAGATACCAAGA 2573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93854363680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5