BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11220.1
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487955 jgi|Araly1|487955|fgenesh2_kg.6__1089__AT5G11220.1 1120 0.0
> Ahg487955 jgi|Araly1|487955|fgenesh2_kg.6__1089__AT5G11220.1
Length=858
Score = 1120 bits (606), Expect = 0.0
Identities = 738/802 (92%), Gaps = 8/802 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACATGGTTTTGGCTTGAGGACtttttttCTCAAAACATCTTATCAACCATATTG 60
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACGTGGTTTTGGCTTGAAGACTTTTTTTCTCAAAACATCTTATCAACCATATTG 60
Query 61 GCTTTAAGCGATCCAGTCATTATGGCTTTAGCTAACGAGGCTGTCTTGTGCTTCCAATGC 120
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GCTTTAAGCGATCCAGTCATTGTGGCTTTAGCTAACGAGGCGGTCTTGTGCTTCCAATGC 120
Query 121 CTTGATTCTGCTGAGCAGCCAAATGACTTCAATCAGATCCCTCTTACTGCAGAACTCTTA 180
|||||||||| |||| ||||||||| ||||||||| |||||||| || |||||||||||
Sbjct 121 CTTGATTCTGGTGAGAAGCCAAATGGCTTCAATCATATCCCTCTCACCGCAGAACTCTTG 180
Query 181 GCAAAAGACATATCTCTTCAAATATT-TCACAAACACCGATACAGTGCTATTGCAGGAAT 239
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 181 GCAAAAGACATATCTCTTCAAATATTCT-ACAAACACCGATACAGTGCTATCGCAGGAAT 239
Query 240 CAGAAACTTTTTAACCACTGTTTGTTCTAGAATATTTTCTGATATTCTTCAACGAGCTCT 299
|| |||||||||||||||||||||||| ||||| |||||||| || ||||||| ||||||
Sbjct 240 CAAAAACTTTTTAACCACTGTTTGTTCAAGAATTTTTTCTGACATACTTCAACAAGCTCT 299
Query 300 TCCACCTTCTTCATCATATCCTTTTGTCACCAGACTCCGCCATCCTCTTATCATCCCCGG 359
|||| |||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||
Sbjct 300 TCCATCTTCTTCATCATATACTTTTGTCACTAGATTCCGCCATCCTCTAATCATCCCCGG 359
Query 360 CTTTCCCCATCCGACGTTTGGGAGCATCAATGTTATGCATGATGTTGTTGTTGGGGATAA 419
|||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 360 TTTTCCCCATCCGACGTTTGGAAGCATCAATGTTATGCCCGATGTCGTTGTTGGGGATAA 419
Query 420 TCTCTACAACAACAACTTA-TTCCCATGTTCTCATGGTCTATGGGGTTGGAACGCTAGCT 478
| |||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||
Sbjct 420 TATCTACAACAACAACATAGTTCTT-TGTTCTCATGGTCTATGGGGTTGGAACGCTAACT 478
Query 479 GCATCGCAACTGATAACGAAAGGACTATGTTTATAACATTTTCTCGTGGGTTTCCTGTTT 538
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 GCATCGCGTCTGATATCGAAAGGACTATGTTTTTAACATTTTCTCGTGGGTTTCCTGTTT 538
Query 539 CGCAAGCGGAGGTGAAACGATTTTTCACCAAAAACTATGGAGAAAATTGTGTTGAAGGCG 598
||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 539 CGCAAGCGGAGGTGAAAAGTTTTTTCACCAAAAAATATGGAGAAAATTGTGTTGAAGGCG 598
Query 599 TTTACATGAAAGAGGACAACAAG-AACTTCCTTAACGCAAATGGGAAT-GACAATGGTCA 656
|||||||| | ||||||||| | |||| || |||||||||| ||| | |||||| ||
Sbjct 599 TTTACATGCACGAGGACAACG-GCAACTCCCCCAACGCAAATGTAAATAG-CAATGGCCA 656
Query 657 ACAACAATCACTATTCGCAAAGCTGGTCTTAAATTCAGTTGCTACTGTGGATCGTATACT 716
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 657 ACAACAATCACTATTTGCAAAGCTGGTCTTAGATTCAATTGCTACTGTGGATCGTATACT 716
Query 717 CGACGGCGAGAAGATAAAAAGGTTTAAGTCTAATGGAAAACATATTTGGGCTCGTAAGTA 776
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 CGACGGCGAGAAGATAAAAAGGTTCAAGTCTAATGGAAAACATATTTGGGCTCGTAAGTA 776
Query 777 TAGCATGACTAGAGATGATTAA 798
|||||||| |||||||| ||||
Sbjct 777 TAGCATGAGTAGAGATGGTTAA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34196256549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5