BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11270.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487959 jgi|Araly1|487959|fgenesh2_kg.6__1093__AT5G11270.1 1591 0.0
> Ahg487959 jgi|Araly1|487959|fgenesh2_kg.6__1093__AT5G11270.1
Length=1207
Score = 1591 bits (861), Expect = 0.0
Identities = 1046/1130 (93%), Gaps = 34/1130 (3%)
Strand=Plus/Plus
Query 3 GAAAACAGCAAACAGTTTTGATG-----A-TAAAAGCCAT----G--GCTCTATCTTCTG 50
||||||||||||||||||||||| | ||||||| || | ||||||||||||
Sbjct 1 GAAAACAGCAAACAGTTTTGATGATAAAATTAAAAGCTATGGCGGTTGCTCTATCTTCTT 60
Query 51 CCGGCGTCGTCTCTCATCTTCATCCTCCGTCGTTTTCTTCGTCGTCAGGAT-TATCCGTC 109
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 61 CCGGCGTCGTCTCTCATCTTCATCCTCCGTCGTTTTCTTCGTCGTCAGG-TCTATCCGTC 119
Query 110 AACAGAGTTCTGTTTCGGAATCGGAACGCTAGTCCTTGTGGTCTATCTCTTCCAATTCTC 169
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 120 AACAGAGTTCTGTTTCGGAATCGGAACGCTAGTCCTCGTGGTGTAGCTCTTCCAATTCTC 179
Query 170 AATCCGTCTCGGTCTGTACTTGTTTTTGCTCGTGGCAAGAATCGAAAAGGATTCGTGTCT 229
| ||||||||| |||||||| || ||||||||||| ||||| |||||||||||| |
Sbjct 180 AGTCCGTCTCGATCTGTACTCGTATTTGCTCGTGGGAAGAACCGAAAAGGATTC--G--- 234
Query 230 TCGTCTTCTTCGTCTCCGAAGaaaaacaaaaagaaaaGTTTGGATGGAGCTGATAATgga 289
||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 235 -CGTCTTCGTCGTCTCCGAAGAAGAACAAAAAGAAAAGTTTCGATGGAGCTGATAATGGA 293
Query 290 ggaggtgaggaggaggaggaTCCATTTGAGGCATTGTTTAATCTTTTAGAAGAAGATTTG 349
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 294 GGAGGTGAGGAGGAGGATGATCCATTTGAGGCGTTGTTTAATCTATTGGAAGAAGATTTG 353
Query 350 AAGAATGATAACTCG------GATGATGAGGAGATAAGTGAGGAAGAGTTAGAGGCATTA 403
|| |||||||||||| |||||||||||||||||||||||||| ||||| || |||
Sbjct 354 AAAAATGATAACTCGTCAATAGATGATGAGGAGATAAGTGAGGAAGACTTAGATGCCTTA 413
Query 404 GCCGATGAGTTAGCTCGAGCATTGGGTGTTGGTGACGATGTTGATGACATCGACTTGTTT 463
|| || |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 414 GCAGAGGAGTTAGCTCGAGCGTTGGGTGGTGGTGACGATGTTGATGGCATCGACTTGTTT 473
Query 464 GGTTCAGTCACTGGtgatgttgatgttgatgttgataatgatgatgatgataatgatgat 523
||||||||||||||||||||||||||||| | || |||||||||||||| |||||||
Sbjct 474 GGTTCAGTCACTGGTGATGTTGATGTTGA---TAATGATGATGATGATGATGATGATGAA 530
Query 524 gatgata-atgatgatgatgatgatgaCA--G-CGAAGAAGATGAAAGACCGACTAAGCT 579
||||| | |||| || ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 531 GATGA-AGATGACGAAGATGATGATGACAGTGAAGAAGAAGATGAAAGACCGACTAAGCT 589
Query 580 GAAGAATTGGCAGCTTAAAAGACTGGCTTATGCATTGAAAGCTGGGCGTCGTAAAACTAG 639
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 590 GAAGAATTGGCAGCTTAGAAGATTGGCTTATGCATTGAAAGCTGGGCGTCGTAAAACTAG 649
Query 640 TATTAAAAATCTGGCAGCTGAGGTTTGTCTTGACAGGGCTTATGTTCTTGAATTGCTTCG 699
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TATAAAAAATCTGGCAGCTGAGGTTTGTCTTGACAGGGCTTATGTTCTTGAATTGCTTCG 709
Query 700 TGACCCGCCTCCAAAGCTGCTAATGCTAAGTGCTACACTACCAGATGAAAAACCGCCAGT 759
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 710 TGACCCGCCTCCGAAGCTTCTAATGCTAAGTGCTACACTACCAGATGAAAAACCACCAGT 769
Query 760 AGCAGCACCTGAGAACTCCTCACCTGATCCAAGTCCTGTGGAATCATTATCAGCTGAAGA 819
|||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 770 AGCAGCACCTGAAAACTCCTCACCTGATCCAATTCCTGTGGAATCATCAACAGCTGAAGA 829
Query 820 TGTTGTGGTCGAACCTAAGGAAAAAGTAAAAGATGAAGCAGTTCATGTGATGCAACAGAG 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGTTGTGGTCGAACCTAAGGAAAAAGTAAAAGATGAAGCAGTTCATGTGATGCAACAGAG 889
Query 880 ATGGTCTGCTCAGAAAAGAGTGAAGAAAGCTCACATTGAAACGCTAGAGAAAGTTTACAG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ATGGTCTGCTCAGAAAAGAGTGAAGAAAGCTCACATTGAAACGCTAGAGAAAGTTTACAG 949
Query 940 AAGATCAAAACGACCCACTAATGCTGTGGTTAGCAGCATTGTTCAAGTGACCAATCTTCC 999
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AAGATCAAAACGACCAACTAATGCTGTGGTTAGCAGCATTGTTCAAGTGACCAATCTTCC 1009
Query 1000 AAGGAAGCGAGTTTTGAAGTGGTTCGAAGATAAAAGAGCAGAAGACGGAGTTCCAGATAA 1059
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1010 AAGGAAGCGAGTTTTGAAGTGGTTCGAAGATAAACGAGCAGAAGACGGAGTTCCAGATAA 1069
Query 1060 GCGAGCTCCATATCAAGCTCCGGTTTGATCTAATGTTAACGTTGAGATGG 1109
| |||||||||| ||||||||||||||||||||||||||| ||||| |||
Sbjct 1070 GAGAGCTCCATACCAAGCTCCGGTTTGATCTAATGTTAACATTGAGCTGG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5