BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11290.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893044 jgi|Araly1|893044|Al_scaffold_0006_1040 1389 0.0
> Ahg893044 jgi|Araly1|893044|Al_scaffold_0006_1040
Length=891
Score = 1389 bits (752), Expect = 0.0
Identities = 780/794 (98%), Gaps = 0/794 (0%)
Strand=Plus/Plus
Query 166 ATGGAAGATCATAAACTTAGGTACCTACAGAGTTTTATTCCTAGAACAGCCTTAAGTTTG 225
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGATCATAAACTGAGGTACCTACAGAGTTTTATTCCTAGAACAGCCTTAAGTTTG 60
Query 226 GAAGACCTGGTAAGAGTTGCAAGGACATGGGAAGAAAGGGCTCGCTTTTGTTACACAGAA 285
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACCTGGTAGGAGTTGCAAGGACATGGGAAGAAAGGGCTCGCTTTTGTTACACAGAA 120
Query 286 GATGTAAGACTTAGTAGCGATGAATATGTGAAGATGTTAATCGTTGATGCAAGCTTCCTA 345
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 GATGTAAGACTTAGTAGCGATGAATTTGTGAAGATGTTAATCGTTGATGCAAGCTTCCTA 180
Query 346 GTAGAACTTCTTTTGAGGTCTCAGTTTGATGTATATAGAGGTATGCTAGATAGGATATAT 405
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GTAGAACTTCTTTTGAGGTCTCAGTTTGATGTATACAGAGGTATGCTAGATAGGATATAT 240
Query 406 GGGAAGCAAAAGATGATTGTCGATGTGAACCATGACGTTATGTTACTTGAAAATCAGCTT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGAAGCAAAAGATGATTGTCGATGTGAACCATGACGTTATGTTACTTGAAAATCAGCTT 300
Query 466 CCATATTTTGTTGTCGAGGGGATGTTTGGATTGCTACATGTTGACTACCATAGGGAACTT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCATATTTTGTTGTCGAGGGGATGTTTGGATTGCTACATGTTGACTACCATAGGGAACTT 360
Query 526 CCCCCTCTGACTCGAATCATTCACAACCACTTCAAGAAATTCTGGATGAGCATCCCTTCA 585
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCACCTCTGACTCGAATCATTCACAACCACTTCAAGAAATTCTGGATGAGCATCCCTTCA 420
Query 586 TTTTCGAGAAGCATTTCTGATTCAAAGATCTGTCATTTTGTTGACCTTCTGCGATCTATT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTTCGAGAAGCATTTCTGATTCAAAGATCTGTCATTTTGTTGACCTTCTGCGATCTATT 480
Query 646 CACCTGCCTTTGGTTTTGAGTTTTCCTGGAGGAAGCATGAGGATGATGGACTCTGTACTG 705
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 481 CACCTGCCTTTGGTTTTGAGTTTTCCAGGAGGAAGCATGAGGATGATGGACTCTGTACAG 540
Query 706 AGTGCAAAAGAGATTCAAAATGCCGGTGTTAAGCTCCAGCCCGCAGATAACAACACCTGC 765
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 541 AGTGCAAAAGAGATTCAAAATGCAGGTGTTAAGCTCCAGCCCGCAGACAACAACACCTGT 600
Query 766 GCACTTGACATAAGCTTTGCAAACGGAGTCCTCACGATTCCCAAAATCAAGATCAACGAC 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCACTTGACATAAGCTTTGCAAACGGAGTCCTCACGATTCCCAAAATCAAGATCAACGAC 660
Query 826 ATCACAGAATCTCTGTACAGAAACATCATCTTGTTTGAGCAATGTCATCGTTTAGATGCT 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 ATCACAGAATCTCTGTACAGAAACATCATCTTGTTTGAGCAATGTCATCGTTTAGATGTT 720
Query 886 TACTTCATTCATTATATGAGGTTCCTCAGTTGCTTCATAAGATCTCCCATGGATGCTGAG 945
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TACTTCATCCACTATATGAGGTTCCTCAGTTGCTTCATAAGATCTCCCATGGATGCTGAA 780
Query 946 TTGTTCATTGACCA 959
||||||||||||||
Sbjct 781 TTGTTCATTGACCA 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5