BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11300.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350326 jgi|Araly1|350326|fgenesh1_pg.C_scaffold_6000919 2156 0.0
> Ahg350326 jgi|Araly1|350326|fgenesh1_pg.C_scaffold_6000919
Length=1311
Score = 2156 bits (1167), Expect = 0.0
Identities = 1263/1311 (96%), Gaps = 0/1311 (0%)
Strand=Plus/Plus
Query 139 ATGTATTGCTCTTCTTCGATGCATCCAAATGCAAACAAAGAAAATATCTCTACTTCAGAT 198
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGTATTGCTCTTCTTCAATGCATCCAAATGCAAACAAAGAAAATACCTCTACTTCAGAT 60
Query 199 GTACAGGAGAGTTTTGTACGAATAACGAGATCACGAGCTAAAAAAGCCATGGGAAGAGGA 258
|| ||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 61 GTTCAGGAGAATGTTGTACGAATAACTAGATCACGAGCTAAAAAAGCCATGGGAGGAGGA 120
Query 259 GTATCAATACCTCCAACAAAACCTTCTTTTAAACAGCAAAAGAGACGTGCAGTACTTAAG 318
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 121 GTATCAATACCTCCAACAAAACCCACTTTTAAACAGCAAAAGAGACGTGCCGTACTTAAG 180
Query 319 GATGTGAGTAATACCTCTGCAGATATTATTTATTCAGAACTTCGAAAGGGAGGCAACATC 378
|||||||||||||| |||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 181 GATGTGAGTAATACTTCTGCAGATAATGTTTATTCAGAACTCCTAAAGGGAGGCAACATC 240
Query 379 AAGGCAAACAGAAAATGTCTAAAAGAGCCTAAAAAAGCAGCAAAGGAAGGTGCTAACAGT 438
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 241 AAGGCTAACAGAAAATGTTTAAAAGAGCCTAAAAAAGCAGCAAAGGAAGGTGCTAATATT 300
Query 439 GCCATGGATATTCTGGTAGATATGCATACAGAAAAATCAAAATTAGCAGAAGATTTGTCC 498
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GCCATGGAAATTCTGGTAGATATGCATACAGAAAAGTCAAAATTAGCAGAAGATTTGTCC 360
Query 499 AAGATCAGGATGGCTGAAGCCCAAGATGTCTCTCTTTCAAACTTTAAAGATGAAGAAATT 558
||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 361 AAGATCAGGATGGCTGAAGCCCAAGATGTCTGTCTTTCAAACTCCAACGATGAAGAAATT 420
Query 559 ACTGAGCAACAAGAAGATGGATCAGGTGTCATGGAGTTACTTCAAGTTGTAGATATTGAT 618
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 421 ACTGAGCAACAAGAAGATGGATCGGGTGTCATGGAGTTTCTTCAAGTTGTAGATATTGAT 480
Query 619 TCCAACGTCGAAGATCCACAGTGTTGCAGCTTGTATGCTGCTGATATATATGACAACATA 678
|||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 481 TCCAACGTTGAAGATCCACAGTGTTGCAGCTTGTATGCTGCTGATATATACAATAACATA 540
Query 679 CATGTTGCAGAGCTTCAACAACGACCCTTGGCTAATTATATGGAGCTTGTGCAGCGAGAT 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATGTTGCAGAGCTTCAACAACGACCCTTGGCTAATTATATGGAGCTTGTGCAGCGAGAC 600
Query 739 ATCGACCCAGACATGAGAAAGATTCTGATTGACTGGCTTGTAGAAGTTTCTGACGACTAC 798
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 ATCGACCCAGAAATGAGAAAGATTCTGATTGACTGGCTTGTAGAGGTTTCTGACGACTAC 660
Query 799 AAGCTGGTTCCAGATACGCTTTACCTTACAGTGAATCTTATCGACCGGTTTCTGTCCAAC 858
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 AAGCTGGTTCCAGATACGCTTTACCTTACAGTTAATCTTATCGACCGGTTTCTGTCCAAC 720
Query 859 AGTTACATTGAAAGGCAAAGACTCCAGCTCCTTGGTGTCTCTTGCATGCTTATAGCTTCA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTTACATTGAAAGGCAAAGACTCCAGCTCCTTGGTGTCTCTTGCATGCTTATAGCTTCA 780
Query 919 AAATATGAAGAGCTTTCCGCACCAGGGGTGGAGGAGTTTTGCTTCATTACGGCCAACACA 978
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAATATGAAGAGCTTTGCGCACCAGGGGTGGAGGAGTTTTGCTTCATTACGGCCAACACA 840
Query 979 TACACAAGACCAGAAGTGCTGAGCATGGAGATTCAAATTCTAAATTTTGTGCACTTTAGA 1038
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 TACACAAGACCAGAAGTGCTGAGCATGGAGATTCAAATTCTAAATTTTGTGCACTTTAAA 900
Query 1039 TTATCGGTTCCTACCACCAAAACATTTCTGAGGCGGTTCATTAAAGCAGCTCAAGCTTCG 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTATCGGTTCCTACCACCAAAACATTTCTGAGGCGGTTCATTAAAGCAGCTCAAGCTTCG 960
Query 1099 TACAAGGTGCCTTTCATTGAACTGGAGTATTTAGCAAACTATCTCGCCGAATTGACACTG 1158
|||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct 961 TACAAGGTGCCTTTCATTGAGCTGGAGTTTTTAGCAAACTATCTCGCTGAATTGACACTG 1020
Query 1159 GTGGAATATAGTTTCCTAAGGTTCCTGCCATCACTAATTGCTGCTTCAGCTGTTTTCCTA 1218
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1021 GTGGAATATACTTTCCTAAGGTTCCTGCCATCACTAATTGCTGCTTCAGCTGTTTTCTTA 1080
Query 1219 GCCCGATGGACACTCGACCAAACTGACCATCCTTGGAACCCTACTCTGCAACACTACACC 1278
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCCAGATGGACACTCGACCAAACTGACCATCCTTGGAACCCTACTCTGCAACACTACACC 1140
Query 1279 AGATATGAGGTAGCTGAGCTGAAGAACACAGTTCTCGCCATGGAGGACTTGCAGCTCAAC 1338
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1141 AGATATGAGGTAGCTGAGCTGAAGAGCACAGTTCTCGCAATGGAGGACTTGCAGCTCAAC 1200
Query 1339 ACCAGTGGCTGTACTCTCGCTGCCACCCGTGAGAAATACAACCAACCAAAGTTTAAGAGC 1398
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACCAGTGGCTGTACCCTCGCTGCCACCCGTGAGAAATACAACCAACCAAAGTTTAAGAGC 1260
Query 1399 GTGGCAAAGCTGACATCTCCCAAACGAGTCACATCACTATTCTCAAGATGA 1449
||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1261 GTGGCAAAGCTGACATCTCCCAAACGAGTTACATCACTTTTCTCAAGATGA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5