BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11310.1
Length=2105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940606 jgi|Araly1|940606|scaffold_601150.1 2772 0.0
> Ahg940606 jgi|Araly1|940606|scaffold_601150.1
Length=1850
Score = 2772 bits (1501), Expect = 0.0
Identities = 1739/1854 (94%), Gaps = 15/1854 (1%)
Strand=Plus/Plus
Query 67 TTCTAATAAACGGCGGCAGAAAATGAACTCTCTGTTCACCGCCTTCCGCCGCAACCTCCT 126
||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 TTCCAAT-AACGGCGGCAGAAAATGAACTCTCTGTTCACCTCCTTCCGCCGCAACCTCTT 59
Query 127 CTTAAACCCTAATCCTCACCGCAACTTCTTTCTTCATAGATTGTTATCATCATCTCGCCG 186
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 60 CTTAAACCCTAATCCTCACCGCAACTTCCTTCTTGATAGATTGTTATCATCATCTCGCCG 119
Query 187 TTCATCCCCGCTCATTCCCGTCGAGCCTCTCATCCAACGGATACAATCACCCGCCGTACC 246
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 120 TTCATCCCCGCTCATTCCCGTCGAGCCTCTCATCCAACGGTTACAATCACCCGCCGCACA 179
Query 247 CGATTCTACA-TGTACTCCACCGCAACAAAACACC-G---TCTCGAAAACCGATCTCTCT 301
||||||||| | | | || | || | || | |||||||||||||||||||
Sbjct 180 TGATTCTACACCGCA-T-CAAATC-AC-CGTC-CCTGATTTCTCGAAAACCGATCTCTCC 234
Query 302 ACTATATCGAATCTTCTCGAGAACACTGATGTTGTTCCCGGTTCGAGTCTCGAGTCAGCT 361
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct 235 ACTATATCGAATCTTCTCGAAAACACTAATGTTGTTCCCGGTTCGAGTCTCGAGTCGGCT 294
Query 362 TTAGATGAAACCGGAATCGAACCGAGTGTTGAGTTGGTTCACGCGTTGTTCGATCGGTTA 421
|| |||||||||||||||||||||||| || | |||||||| ||||||||||||||||||
Sbjct 295 TTGGATGAAACCGGAATCGAACCGAGTCTTCAATTGGTTCAGGCGTTGTTCGATCGGTTA 354
Query 422 AGTTCATCGCCGATGTTGCTTCACTCAGTGTTCAAATGGGCGGAGATGAAACCTGGGTTT 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 355 AGTTCATCGCCGATGTTGCTTCACTCAGTGTTCAAATGGGCGGAGATGAAACCTGGCTTT 414
Query 482 ACACTTTCTCCTTCACT-TTTCGATTCTGTTGTCAATTCTCTATGTAAAGCTCGTGAATT 540
|| |||||||||||||| ||| |||||||| |||||||||| ||||||||||| |||||
Sbjct 415 ACGCTTTCTCCTTCACTGTTT-AATTCTGTTATCAATTCTCTCTGTAAAGCTCGGGAATT 473
Query 541 TGAAATTGCTTGGTCGTTGGTTTTTGATCGAGTGAGAAGCGATGAAGGATCGAATTTGGT 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 474 TGAAATTGCTTGGTCGTTGGTTTTTGATCGAGTGAGACGCGATGAAGGATCGAATTTGGT 533
Query 601 TTCTGCAGATACGTTCATCGTTTTGATCAGACGGTATGCTCGTGCTGGTATGGTGCAACA 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTCTGCAGATACGTTTATCGTTTTGATCAGACGGTATGCTCGTGCTGGTATGGTGCAACA 593
Query 661 AGCTATACGAGCTTTTGAATTCGCTAGAAGTTATGAACCGGTTTGTAAATCAGCTACGGA 720
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 594 AGCTATACGAGCTTTCGAATTCGCTAGAAGTTATGAACCGGTGTGTAAATCAGCTTCGGA 653
Query 721 ACTTAGGTTGCTTGAGGTTTTGTTAGATGCACTTTGTAAAGAAGGTCATGTTAGAGAAGC 780
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 654 ACTTAAGTTGCTTGAGGTTTTATTAGATGCACTTTGTAAAGAAGGACATGTTAGAGAAGC 713
Query 781 TTCAATGTATTTGGAGAGAATAGGAGGGACGATGGATTCGAATTGGGTTCCTTCTGTTCG 840
|||||||||||||||||||| | |||||| ||||||||| |||||| |||||||||||||
Sbjct 714 TTCAATGTATTTGGAGAGAAGAAGAGGGATGATGGATTCAAATTGGCTTCCTTCTGTTCG 773
Query 841 GATTTTCAACATTTTATTGAATGGATGGTTTCGTTCAAGAAAGCTAAAGCAGGCAGAGAA 900
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 774 GATTTTCAACATTTTATTGAATGGATGGTTTCGTTCGAGAAAACTGAAGCAGGCAGAGAA 833
Query 901 GTTATGGGAAGAGATGAAAGCGATGAATGTGAAGCCGACTGTTGTTACTTACGGTACTCT 960
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 834 GCTGTGGGAAGAGATGAAAGCGATGAATGTGAAGCCGACTGTTGTTACTTATGGTACTCT 893
Query 961 TATCGAAGGGTATTGCAGGATGCGTCGTGTTCAGATTGCTATGGAGGTTCTTGAAGAAAT 1020
|| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 894 CATAGAAGGGTATTGCAGGATGCGTCGTGTTGAGATTGCTATGGAGATTCTTGAAGAAAT 953
Query 1021 GAAGATGGCAGAAATGGAGATTAATTTTATGGTCTTTAATCCGATTATCGATGGTTTAGG 1080
||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 954 GAAGATGGCAGAAATGGAGCTTAATTTTATGGTCTTTAACCCGATAATCGATGGTTTAGG 1013
Query 1081 AGAAGCGGGGCGGTTAAGTGAAGCTCTAGGTATGATGGAAAGGTTCTTCGTTTGTGAATC 1140
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 AGAAGCGGGACGGTTAAGTGAAGCTCTAGGTATGATGGAAAGGTTCTTCGTTTGCGAATC 1073
Query 1141 AGGTCCTACTATAGTGACTTATAATTCACTAGTGAAGAATTTCTGCAAGGCTGGAGATCT 1200
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AGGTCCTACCATAGTGACTTATAATTCACTAGTGAAGAATTTCTGCAAGGCTGGAGATCT 1133
Query 1201 TCCTGGTGCTAGCAAAATACTCAAGATGATGATGACACGAGGTGTTGATCCTACCACGAC 1260
||||||||||||||| ||||| |||||||||||| || |||| |||||||||||||| ||
Sbjct 1134 TCCTGGTGCTAGCAAGATACTGAAGATGATGATGGCAAGAGGCGTTGATCCTACCACAAC 1193
Query 1261 TACATACAACCATTTCTTCAAGTATTTCTCAAAGCATAACAAAACGGAAGAGGGCATGAA 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1194 TACATACAACCATTTCTTCAAGTATTTCTCAAAGCATAACAAAACGGAAGAGGGAATGAA 1253
Query 1321 CTTATATTTCAAGTTGATTGAAGCTGGACACAGTCCAGACCGGTTAACGTATCATTTGAT 1380
|||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 1254 CTTATACTTCAAGTTGATTGAAGCTGGGCATAGTCCAGACCGGTTGACGTACCATTTGAT 1313
Query 1381 CTTGAAAATGCTGTGTGAGGATGGGAAGCTGAGCTTGGCGATGCAAGTGAACAAGGAGAT 1440
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CTTGAAAATGCTCTGTGAGGATGGGAAGCTGAGCTTGGCGATGCAAGTGAACAAGGAGAT 1373
Query 1441 GAAAAACAGAGGAATCGATCCTGACTTATTAACAACCACAATGCTTATACATTTGCTCTG 1500
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1374 GAAAAACAGAGGAATCGATCCTGACTTATTAACCACCACAATGCTGATGCATTTGCTCTG 1433
Query 1501 CAGACTCGAGATGTTAGAAGAAGCCTTTGAAGAGTTTGACAACGCAGTGAGACGAGGGAT 1560
||||||||| |||||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 1434 CAGACTCGACATGTTAGAAGAAGCATTCGAAGAGTTTGACAACGCGGTCAGACGAGGGAT 1493
Query 1561 TATTCCACAGTACATCACATTTAAGATGATCGATAACGGGTTGAGATCGAAAGGGATGAG 1620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TATTCCACAGTACATCACATTTAAGATGATCGATAACGGGTTGAGATCGAAAGGGATGAC 1553
Query 1621 CGATATGGCGAAGAGACTATCCAGCCTAATGTCGTCTCTTCCTCACTCGAAGAAGCTGCC 1680
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1554 CGATATGGCGAAGAGACTATCCAGCCTAATGGCGGCTCTTCCTCACTCGAAGAAGCTGCC 1613
Query 1681 AAATACATACAGAGAAGCAGTAGATGCACCGCCTGATAAAGATAGAAGGAAGTCTATTTT 1740
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AAATACATACAGAGAAGCGGTAGATGCACCGCCTGATAAAGATAGAAGGAAGTCTATTTT 1673
Query 1741 GCATAGAGCAGAAGCCATGTCTGATGTGTTGAAAGGTTGCAGGAACCCGAGAAAACTCGT 1800
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1674 GCATAGAGCAGAAGCAATGTCTGATGTGTTGAAAGGTTGCAGAAACCCGAGAAAACTCGT 1733
Query 1801 GAAGATGCGTGGATCGCACAAAAAAGCTGTTGGTGAAGACATAAACCT-GATAGATGATA 1859
||||||||||||||| |||||||||| ||| ||||||| ||| || || |||||||
Sbjct 1734 GAAGATGCGTGGATCACACAAAAAAGGTGTCCGTGAAGATG-AAAGCTTGACAGATGATC 1792
Query 1860 TCAATGAACGAAATGGAGATGCAGGGGATTTTGAGTGAGAGCACTCTCTTGTAA 1913
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1793 TCAATGAACGAAGTGGAGATTCAGGGGATTTTGAGTGAGAGCACTCTTTTGTAA 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79189619355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5