BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11320.1
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487963 jgi|Araly1|487963|fgenesh2_kg.6__1097__AT5G11320.1 1993 0.0
> Ahg487963 jgi|Araly1|487963|fgenesh2_kg.6__1097__AT5G11320.1
Length=1334
Score = 1993 bits (1079), Expect = 0.0
Identities = 1226/1296 (95%), Gaps = 14/1296 (1%)
Strand=Plus/Plus
Query 1 ATGGGCACTTGTAGAGAATCAGAACCTACTCAAATCTTCGTTCCTGGTCCGATCATCGTC 60
||||| |||||||||||| |||| |||| |||||||||| | ||||||||||||||||||
Sbjct 1 ATGGGAACTTGTAGAGAACCAGAGCCTAGTCAAATCTTCCTCCCTGGTCCGATCATCGTC 60
Query 61 GGAGCCGGGCCTTCCGGTCTAGCCGTAGCGGCTTGTTTGTCAAACCGAGGCGTACCATCG 120
|| || || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTGCTGGTCCGTCCGGTCTAGCCGTAGCGGCTTGTTTGTCAAACCGAGGCGTACCATCG 120
Query 121 GTTATCCTCGAGAGAACCGATTGTTTAGCTTCTTTATGGCAAAAAAGAACCTACGACCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTATCCTCGAGAGAACCGATTGTTTAGCTTCTTTATGGCAAAAAAGAACCTACGACCGT 180
Query 181 CTCAAACTCCATCTCCCTAAACACTTTTGCGAGCTTCCTCTTATGCCTTTCCCTAAAAAC 240
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CTCAAACTCCATCTCCCTAAGCACTTTTGCGAGCTTCCTCTTTTGCCTTTCCCTAAAAAC 240
Query 241 TTCCCCAAATA-CCCATCCAAGCAACTATTCATCTCCTACGTTGAGTCCTACGCTGCCCG 299
||||| ||||| ||| ||||||||| ||||||||||||||| ||||| ||||| |||||
Sbjct 241 TTCCCTAAATATCCCC-CCAAGCAACAATTCATCTCCTACGTCGAGTCTTACGCCGCCCG 299
Query 300 GTTTAATATCAAACCGGTATTTAACCAAACCGTCGAGAAAGCAGAGTTCGATGACG-CAT 358
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |
Sbjct 300 GTTTAATATCAAACCGGTTTTTAACCAAACCGTCGAGAAAGCCGAGTTCGATGACGTC-T 358
Query 359 CTGGTCTATGGAATGTGAAGACGCAAGACGGTGTATACACATCCACGTGGCTGGTGGTTG 418
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 CTGGTCTATGGAATGTGAAGACGCAAGACGTTGTATACACATCCACGTGGCTGGTGGTTG 418
Query 419 CCACAGGGGAAAACGCTGAACCGGTGTTTCCGAACATACCCGGTTTAAAGAAGTTTACTG 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCACAGGAGAAAACGCTGAACCGGTGTTTCCGAACATACCCGGTTTAAAGAAGTTTACTG 478
Query 479 GACCGGTTGTTCACACCAGTGCGTACAAGTCCGGTTCGGCATTCGCAAACCGGAAGGTTT 538
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 479 GACCGGTTGTTCACACCAGTGCGTACAAGTCCGGTTCGGTATTTGCAAACCGGAAGGTTT 538
Query 539 TGGTGGTTGGTTGTGGAAATTCCGGTATGGAGGTCAGCTTGGATCTTTGTAGATACAATG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGGTGGTTGGTTGTGGAAATTCCGGTATGGAGGTCAGCTTGGATCTTTGTAGATACAATG 598
Query 599 CTCTGCCTCATATGGTCGTTAGAAACTCTGTACATGTATTACCAAGAGACTTTTTTGGTC 658
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 599 CTCTGCCTCATATGGTCGTTAGAAACTCTGTACATGTGTTACCAAGAGATTTTTTTGGTC 658
Query 659 TATCAACATTTGGAATAGCCATGACACTACTGAAATGGTTTCCTCTAAAGCTGGTGGACA 718
|||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||
Sbjct 659 TATCGACATTTGGAATAGCGATGACACTACTAAAATGGTTTCCTTTAAAGCTGGTGGACA 718
Query 719 AAT-TTCTCCTACTTCTTGCTAATTCTACGTTGGGCAATACCGACCTTTTAGGCCTTCGA 777
| | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 719 A-TGTTCTCCTACTTCTTGCTAATTCTACGTTGGGTAATACCGACCATTTAGGCCTTCGA 777
Query 778 CGACCTAAGACCGGACCAATTGAGCTAAAGAACGTCACCGGTAAAACTCCCGTTCTTGAT 837
|||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct 778 CGACCTAAAACCGGACCAATTGAGCTCAAGAACGTCACTGGAAAAACTCCGGTTCTTGAT 837
Query 838 GTCGGTGCCATTTCTTTAATCCGATCAGGACAAATTAAAGTGACGCAAGCCGTGAAAGAA 897
||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 838 GTCGGCGCCATTTCTTTAATCCGATCAGGACAAATTAGAGTGACGCAAGCGGTGAAAGAA 897
Query 898 ATAACGAGGAACGGGGCAAAGTTTCTGAATGGGAAAGAAATTGAATTCGACTCCATAATA 957
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 898 ATAACGAGGAACGGAGCAAAGTTTCTGAATGGGCAAGAAATTGAATTCGACTCCATAATA 957
Query 958 TTAGCGACTGGGTATAAGAGTAATGTACCCGATTGGCTTAAGGAGAATAGTTTTTTCACA 1017
|||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||
Sbjct 958 TTAGCGACTGGGTATAAGAGTAATGTACCCGACTGGCTCAAGGACAATAATTTTTTCACA 1017
Query 1018 AAAGAAGGAATGCCAAAAACGCCGTTTCCTAACGGATGGAAAGGAGAGAAGGGACTATAC 1077
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1018 AAAGAAGGAATGCCGAAAACGCCGTTTCCTAACGGTTGGAAAGGAGAGAAGGGACTATAC 1077
Query 1078 ACGGTGGGTTTCACGAGAAGAGGACTTTCGGGAACAGCCTATGACGCCGTTAAGATCGCT 1137
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 ACGGTGGGTTTCACGAGAAGAGGACTTTCAGGAACAGCCTATGACGCCGTTAAGATCGCT 1137
Query 1138 GAGGATATAACAGACCAATGGATGAAATTTAACGGTCCGTTGAGT-TGTAGGAATATTTG 1196
||||||||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||
Sbjct 1138 GAGGATATAACAGACCAATAGATGAAATTTAACGGCCCGTTGAGTAT-TCGGAATATTTG 1196
Query 1197 TAGTTCCCATATTATTCATCTTCATTTCAATAAATCCTAATAATTTGGTT-CTTTTCT-T 1254
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |
Sbjct 1197 TAGTTCCCATATTATTCATCTTCATTTCAATAAATCCTAATAATTCGGTTACTTTTTTGT 1256
Query 1255 --GT-T-CTCAATTTTGACTTGTATCTTTTTTCATG 1286
|| | |||||||||||||||| ||| ||||||||
Sbjct 1257 TCGTGTTCTCAATTTTGACTTGTTTCTCTTTTCATG 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5