BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11330.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940608 jgi|Araly1|940608|scaffold_601152.1 1916 0.0
Ahg916368 jgi|Araly1|916368|Al_scaffold_0008_1119 97.1 3e-19
> Ahg940608 jgi|Araly1|940608|scaffold_601152.1
Length=1262
Score = 1916 bits (1037), Expect = 0.0
Identities = 1172/1237 (95%), Gaps = 10/1237 (1%)
Strand=Plus/Plus
Query 28 TTTGATGAGATGGGGAAGAAGAAAGGGAAAGCGATCATAGTAGGAGGAAGTATAGCAGGC 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TTTGATGAGATGGGGAAGAAGAAAGGGAAAGCGATCATAGTAGGAGGAAGTATAGCAGGC 71
Query 88 TTATCTTGCGCACACTCGCTCACGTTAGCATGCTGGGATGTTTTGGTTCTCGAGAAATCT 147
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 72 TTATCTTGCGCACACTCGCTCACGTTAGCAGGCTGGAATGTTTTGGTTCTCGAGAAATCT 131
Query 148 TCCGAACCTCCTGTTGGGAGTCCTACTGGTGCTGGGCTCGGACTCGACCCTCAGGCTCGG 207
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 132 TCCGAACCTCCGGTTGGGAGTCCTACTGGTGCTGGTCTCGGACTCGACCCTCAGGCTCGC 191
Query 208 CAGATCATCAAATCATGGCTTACTAC-TCCACAGCTCTTAGATGAAATCACCTTGCCTCT 266
|| ||||||||||| |||||| || | |||||| ||||||||||||||||||||||||||
Sbjct 192 CAAATCATCAAATCCTGGCTTCCT-CGTCCACACCTCTTAGATGAAATCACCTTGCCTCT 250
Query 267 CTCGATTGATCAGAATCAGACAACTGATAGTGAGAAGAAAGTGAC-AAGGATTTTAACAA 325
||| |||||||||||||||||||| |||||||||||||||| ||| || |||| ||||||
Sbjct 251 CTCAATTGATCAGAATCAGACAACAGATAGTGAGAAGAAAGAGACGAA-GATTCTAACAA 309
Query 326 GAGATGAGGATTTTGATTTCCGAGCAGCTTATTGGTCAGATATTCAATCTCTTCTGTATA 385
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 310 GAGATGAGGATTTCGATTTCCGAGCAGCTTATTGGTCAGATGTTCACTCTCTTCTGTATA 369
Query 386 ACGCATTGCCTCAGACCATGTTTCTTTGGGGACATAAGTTTCTGTCTTTCACAATGTCAC 445
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AAGCATTGCCTCAAACCATGTTTCTTTGGGGACATAAGTTTCTGTCTTTCACAATGTCAC 429
Query 446 AAGATGAATCTAATGTAAAGGTTAAGACTTTAGTTGTGGAAACTCAAGAAACTGTTGAAA 505
|||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 430 AAGATGAATCTATTGTAAAGGTTAAGACTTTAGTTATAGAAACTCAAGAAACTGTTGAAA 489
Query 506 TTGAAGGAGACTTACTTATTGCAGCTGATGGGTGTTTGTCTTCGATTCGGAAAACTTTCT 565
|||||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 490 TTGAAGGAGATTTACTTGTTGCAGCAGATGGGTGTTTGTCTTCTATTCGGAAAACTTTCT 549
Query 566 TGCCTGACTTTAAACTGAGGTACTCTGGTTATTGTGCTTGGAGAGGTGTATTTGATTTCT 625
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 550 TGCCTGACTTTAAACTGAGGTACTCTGGTTATTGTGCTTGGAGAGGTGTTTTTGATTTCT 609
Query 626 CAGGGAATGAGAACTCGGAAACAGTTAGTGGGATTAAGAAAGTGTATCCGGATCTTGGAA 685
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 610 CAGGGAATGAGAACTCGGAAACAGTTACTGGAATTAAGAAAGTGTATCCGGATCTTGGAA 669
Query 686 AATGCTTGTATTTTGATCTCGGTGAACAGACTCATAGCGTGTTTTACGAGCTTTTTAACA 745
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 670 AATGCTTGTATTTTGATCTCGGTGAACAGACTCATACCGTGTTTTACGAGCTTTTTAACA 729
Query 746 AGAAACTCAACTGGATTTGGTATGTCAATCAACCAGAGCCTGACCTGAAAAGCAACTCTG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AGAAACTCAACTGGATTTGGTATGTCAATCAACCAGAGCCTGACCTGAAAAGCAACTCTG 789
Query 806 TTACTCTAAAAGTGAGTCAAGAAATGATCAATAAGATGCATCAAGAAGCAGAAACCATTT 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 790 TTACTCTAAAAGTGAGTCAAGAAATGATCAATAAGATGCATCAAGAAGCAGAAACCATCT 849
Query 866 GGATCCCCGAACTAGCGAGACTCATGAGTGAAACAAAGGATCCTTTCCTTAATGTTATTT 925
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 850 GGATCCCGGAGCTAGCGAGACTCATGAGAGAAACAAAGGATCCTTTCCTTAATGTTATTT 909
Query 926 ACGACTCTGACCCTTTAGAACGAATCTTTTGGGGAAACATCGTGTTGGTTGGAGACGCGG 985
|||| | ||||||||||||||| ||||| ||||||||||||||| |||||||||| || |
Sbjct 910 ACGATTGTGACCCTTTAGAACGGATCTTCTGGGGAAACATCGTGCTGGTTGGAGATGCTG 969
Query 986 CTCATCCCACGACCCCTCATGGTCTAAGAAGCACAAACATGTCGATACTTGATGCGGAAG 1045
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 970 CTCATCCCACTACCCCCCATGGTCTAAGAAGCACAAACATGTCAATACTTGATGCGGAAG 1029
Query 1046 TGCTAGGCAAATGCTTAGAGAACTGTGGACCTGAGAATGTAAGTTTGGGTCTTGAGGAAT 1105
|||||||||||||| | ||||| ||||||||||| ||| ||||||||||||| ||||||
Sbjct 1030 TGCTAGGCAAATGCCTGGAGAAATGTGGACCTGATAATCTAAGTTTGGGTCTAAAGGAAT 1089
Query 1106 ATCAGAGAATAAGATTGCCTGTTGTTTCTGAGCAAGTTTTGTATGCAAGGCGTTTGGGGC 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 ATCAGAGAATAAGATTGCCTGTTGTTTCTGAGCAAGTTTTGTATGCAAGGCGTTTGGGGC 1149
Query 1166 GTATCAAGCAAGGTCTGGATCATGACGGAATTGGAGATGGCGTTTTTGGTTTGGAGCAGA 1225
|||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1150 GTATCAAGCAAGGTCTGGATCATGACGGAATTGGAGGTGGCG-----G-TTTGGAGCAGA 1203
Query 1226 GAAACATGCCATTCTTTTCCTGTGCTCCCCTTATCTA 1262
||| ||||||||| ||||| |||||||||||| ||||
Sbjct 1204 GAACCATGCCATTTTTTTCTTGTGCTCCCCTTGTCTA 1240
> Ahg916368 jgi|Araly1|916368|Al_scaffold_0008_1119
Length=891
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 710 AACAGACTCATAGCGTGTTTTACGAGCTTTTTAACAAGAAACTCAACTGGATTTG 764
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 49 AACAGACTCATAGCGTGTTTTACGAGCTTTTTAACAAGAAACTCAATTGGATTTG 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5