BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11340.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940609 jgi|Araly1|940609|scaffold_601153.1 898 0.0
> Ahg940609 jgi|Araly1|940609|scaffold_601153.1
Length=535
Score = 898 bits (486), Expect = 0.0
Identities = 518/534 (97%), Gaps = 0/534 (0%)
Strand=Plus/Plus
Query 53 TCTAGATTGTTCGACGGCGATGGGAGCTGGGAGAGAAGTCAGCGTATCGCTAGATGGAGT 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTAGATTGTTCGACGGCGATGGGAGCTGGGAGAGAAGTCAGCGTATCGCTAGATGGAGT 61
Query 113 CAGAGACAAAAACTTGATGCAGCTTAAGATACTCAACACGGTTTTGTTCCCGGTTCGTTA 172
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 CAGAGACAAAAACTTGATGCAGCTTAAGAAACTCAACACGGTTTTGTTCCCGGTTCGTTA 121
Query 173 CAACGACAAGTACTACGCCGATGCAATCGCTGCCGGCGAATTCACCAAGCTTGCATATTA 232
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 122 CAACGACAAGTACTACGCCGATGCAATCGCTTCCGGCGAATTCACCAAGCTTGCATATTA 181
Query 233 CAATGACATATGTGTTGGAGCTATCGCCTGTCGGCTGGAGAAGAAAGAAAGTGGGGCCAT 292
|| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 182 CAGTGACATATGTGTTGGAGCTATCGCTTGTCGGCTGGAGAAGAAAGAAGGTGGAGCCAT 241
Query 293 GCGAGTTTATATAATGACGCTTGGTGTTCTTGCACCCTACCGTGGGATTGGCATTGGCTC 352
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 242 GCGAGTTTATATAATGACGCTTGGTGTTCTTGCACCATACCGTGGGATTGGCATTGGTTC 301
Query 353 AAATCTATTGAATCATGTTCTTGACATGTGCTCCAAGCAAAACATGTGTGAGATATACTT 412
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 302 AAAGCTATTGAATCATGTTCTTGAGATGTGCTCCAAGCAAAACATGTGTGAAATATACTT 361
Query 413 GCATGTGCAGACAAACAACGAAGACGCAATCAAGTTCTACAAGAAGTTCGGCTTTGAGAT 472
||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 362 GCACGTGCAGACAAACAACGAAGACGCGATCAAGTTCTACAAGAAGTTCGGGTTCGAGAT 421
Query 473 CACAGATACCATACAAAACTATTACATCAACATTGAGCCAAGAGATTGCTACGTTGTCAG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CACAGATACCATACAAAACTATTACATCAACATTGAGCCAAGAGATTGCTACGTTGTCAG 481
Query 533 CAAGTCCTTTGCTCAATCTGAAGCCAACAAATGATGAAAAATACCAAACTTGGG 586
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 CAAGTCCTTTGCTCAATCTGAAGCCAACAAATGATGAAAAATACCCAACTTGGG 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5