BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11350.1
Length=2520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940610 jgi|Araly1|940610|scaffold_601154.1 3435 0.0
> Ahg940610 jgi|Araly1|940610|scaffold_601154.1
Length=2304
Score = 3435 bits (1860), Expect = 0.0
Identities = 2161/2305 (94%), Gaps = 25/2305 (1%)
Strand=Plus/Plus
Query 9 AATTCGATTGACCAATGCGGCGTTCTCGTTTTGTTGCTCAAGTTTTCTCCGACG-TTACC 67
|||||||||||||||||||||||||||||||| | || |||||||||||||||| || ||
Sbjct 9 AATTCGATTGACCAATGCGGCGTTCTCGTTTTCTCGCCCAAGTTTTCTCCGACGCTT-CC 67
Query 68 TTCGCTGACGCCTCCACTATC-TCTGCTCCAATCTTCACCATGTCTACTCGTGCTCCGTA 126
||| |||||| ||||||| | |||||||||||| || ||||||||||||||||||||||
Sbjct 68 TTCACTGACGTATCCACTA-CTTCTGCTCCAATCGTCGCCATGTCTACTCGTGCTCCGTA 126
Query 127 CAGAGGTGCCCGAGGACGAGGACGAGGCCGAGGTGGGAGAAGTTTCTCCGATCGTCCGTA 186
|||||||| |||| | || | |||||||||| ||||||||||||||||||||||||||
Sbjct 127 CAGAGGTGGCCGA-G--GA--A-GAGGCCGAGGCGGGAGAAGTTTCTCCGATCGTCCGTA 180
Query 187 CAATGATGACGC-GG--GAAGAGATCAGTTCGTTACTGGAGATTCTCATTTTCAATCAGT 243
|||| ||||||| || ||||||||||||||||||||||||| || |||||||| |||||
Sbjct 181 CAATAATGACGCAGGAAGAAGAGATCAGTTCGTTACTGGAGACTCGCATTTTCAGTCAGT 240
Query 244 TCATGACGCCAATTTCCGATTCCGGCATGGTGAACCTTATCGACAACATCAGCCTCCGCT 303
||||||||||||| |||||||||| ||||||||| |||||||||||| ||| ||||||||
Sbjct 241 TCATGACGCCAATCTCCGATTCCGACATGGTGAATCTTATCGACAACCTCAACCTCCGCT 300
Query 304 TGATCAGCGGCAGCAACCACCGTTCAATCAGAATTACGAATTTCGACCTCCGCCGCCGTC 363
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 301 AGATCAGCGGCAGCAACCACCGTTCAATCAGAATTACGAATTTCGGCCTCGGCCGCCGTC 360
Query 364 ACGAGGTCAGTGGCAACAATTCCGTCAACCTAATCAGTTT-CCGTCTAATCAAAACTACG 422
|||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||| |
Sbjct 361 TCGAGGTCAGTGGCAACAATTTCGTCAACCTAATCA-TTTACCGTCCAATCAAAGCTATG 419
Query 423 CGGCTTGCCCTCCCCCTCCGTTCTATCAAAACCAGATGTCCCGGCCGCCTCCACAGCAGA 482
|||| | ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 420 CGGCATACCCTCCCCCTCCGTTCTATCAAAACCAAATGTCTCGGCCGCCTCCACATCAGA 479
Query 483 GCTTTCGTCAACGGCCACGGTCAAAACCTTCAGATTACCGTGAATGGGAATATGCCAAAA 542
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 GCTTTCGTCAACGGCCACGGTCAAAACCTTCAGATTACCGGGAATGGGAATATGCCAAAA 539
Query 543 CGCCACCGTCTCCTGGCTCCGAAAAGTTTGTTGTTTTATCGTATAATATATTGGCGGATT 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 CGCCACCGTCTCCTGGCTCCGAAAAGTTTGTTGTTTTATCGTATAATATCTTGGCGGATT 599
Query 603 ACCTTGCAAATGATCACTGGAGAAGTCTTTACTTTCACATACCGAGGAATATGTTGAGTT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACCTTGCAAATGATCACTGGAGAAGTCTTTACTTTCACATACCGAGGAATATGTTGAGTT 659
Query 663 GGGGATGGAGAAAGAGCAAATTAGTGTTCGAGCTTAGCCTATGGTCTGCAGATATAATGT 722
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 GGGGATGGAGAAAGAGCAAATTAGTGTTCGAGCTTGGCCTATGGTCTGCAGATATAATGT 719
Query 723 GCCTTCAGGAAGTTGATAAATTTCAGGACTTAGAGGAGGAGATGAAGCACCGGGGATATA 782
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 GCCTTCAGGAAGTTGATAAATTTCAGGATTTAGAGGAGGAGATGAAGCACCGGGGATATA 779
Query 783 GTGCTATTTGGAAGATGCGGACTGGTAATGCTGTTGACGGATGTGCAATATTTTGGCGAT 842
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 GTGCCATTTGGAAGATGCGGACTGGTAATGCTGTTGACGGCTGTGCAATATTTTGGCGAT 839
Query 843 CCAATAGATTCAAGTTGGTTCACGAGGAAAGCATCCAGTTCAATCAACTTGGTCTCCGAG 902
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 840 CAAATAGATTCAAGTTGGTTCACGAGGAAAGCATCCAGTTCAATCAACTTGGTCTTCGGG 899
Query 903 ATAACGTTGCTCAAATATGTGTGCTTGAGACATTGTTGACTTCACATACAAAAGAAAATG 962
|||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 900 ATAATGTTGCTCAAATATGTGTGTTTGAGACACTGTTGACTTCACATACAAAAGAAAATG 959
Query 963 AGACCCCTCCACCTGAAAGCTCTGCTGGTTCCCATCGAGTTGTCATTTGTAACATTCACG 1022
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 960 AGACCCCTCCACCTGAAAGCTCTGCTGGTTCCTGCCGAGTTGTCATTTGTAACATTCACG 1019
Query 1023 TGCTTTTTAATCCTAAAAGAGGAGACTTTAAACTTGGTCAGGTCAGAACACTCTTAGATA 1082
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1020 TGCTTTTTAATCCTAAAAGAGGAGACTTTAAACTTGGTCAGGTCAGGACACTCTTAGATA 1079
Query 1083 AAGCTCATGCTGTTTCAAAACTCTGGGATGATGCGCCTATTGTTCTTTGTGGGGATTTCA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAGCTCATGCTGTTTCAAAACTCTGGGATGATGCGCCTATTGTTCTTTGTGGGGATTTCA 1139
Query 1143 ATTGTACACCAAAGAGTCCTTTGTACAACTTTATTTCAGACCGGAAGTTGGATTTGTCTG 1202
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATTGTACACCAAAGAGTCATTTGTACAACTTTATTTCAGACCGGAAGTTGGATTTGTCTG 1199
Query 1203 GTTTGGCCAGAGACAAAGTTTCGGGGCAAGTTTCTGCTGAGTTTCGTCCACCAAGGCCAG 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTTTGGCCAGAGACAAAGTTTCGGGGCAAGTTTCTGCTGAGTTTCGTCCACCAAGGCCAG 1259
Query 1263 AAAATTATACAACGAGGTATCAGTCCGCCAACAAATCTCCACAAGGTCAAGTTCAACCAC 1322
||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1260 AAAGTTATACGACGAGGTTTCAGTCCGCCAATAAATCTCCACAAGGTCAAGTTCAACTAC 1319
Query 1323 CAAATTTGATCACAAATGCTCATATGGAGAATAACTCCAACATAGATGTTGGAACGGCCC 1382
|| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1320 CAGATTCGATCACAAATGCTCATATGGAGAATAACTCCAACATAGATGTTGAAACGCCCC 1379
Query 1383 CCTCCGAGAAGACATCTGAGCTTCCATGTGGTGATACAATTCTTGCTGGTCACGAAGCCA 1442
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1380 CCTCCGAAAAGACATCTGAGCTTCCATGTGGTGATACAATTCTTGCTGCTCACGAAGCCA 1439
Query 1443 CCTCCAGCTCTGACCAAGTATTACCATGCGAGAATATGGCCTCAGATTGTCAGTTTGGAA 1502
|||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||
Sbjct 1440 CCTCGAGCTCTGACCAAGTATTACCAGGCGAGAATATGGCCTCAGATTGTAATTTTGAAA 1499
Query 1503 TAGAAAACAGAAAACCTGATGATTCCGGGAATCTCTCGACAGCTGAAGATCTTTCTTCAC 1562
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||
Sbjct 1500 TAGAAAACAGAAAACCTGATGACTCCGGGAATCTCTCGATAGCTGAAGATCTTTCTACAG 1559
Query 1563 TAACCATATCAGATACAGAACCTCAACATGCTTCCAGTGCTAGAGAAGATTTGAATACAG 1622
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TAATTATATCAGATACAGAACCTCAACATGCTTCCAGTGCTAGAGAAGATTTGAATACAG 1619
Query 1623 ATCGTTCTGTAAGTTCCGGTTTATCAGAAACAGAGCAAACTCCTGAGGAAATATGTTCCA 1682
||| || ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1620 ATCATTTTGTAAGTTCGGGTTTATCAGAAACAGAGCATTCTCCTGAGGAAATATGTTCCA 1679
Query 1683 GTGATCAAGATATTTCATCTAGTCTCTCCACCAAGGTTGACACTT-TTGTGGCTGAAATG 1741
||||||||| |||||||||||||||||||||||||||||||| | || ||||||| |||
Sbjct 1680 GTGATCAAGGTATTTCATCTAGTCTCTCCACCAAGGTTGACAATACTT-TGGCTGAGATG 1738
Query 1742 AAACTAGATGGCTTAAAATTGGACGAACCAGTAGTATTCGCGCAAGATGAAGAAAGTTT- 1800
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1739 AAACTAGATGGCTTAAAATTGGACGAACCAGTTGTATTCGCGCAAGATGAAGAA-GTTTT 1797
Query 1801 AGGTGAAGATGGGGAAACCTTTTTGGCTAAGCTACACGATAACAATGAAAACTTGAGTCA 1860
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 1798 AGGTGAAGATGGGGAAACCTTTTTGGCTAAGCTACACGATTATAATGAAGACTTGAGTCA 1857
Query 1861 AAAAGGGGAACTTGTGAGTGAAGTTCCACTTAAAT-GGAGTTCTGAAGCTTTAAATAGTG 1919
||||||||||||||||| ||| || ||| ||||| || ||||||||||||| |||| ||
Sbjct 1858 AAAAGGGGAACTTGTGAATGATTTTTCACGTAAATCGG-GTTCTGAAGCTTTTAATAATG 1916
Query 1920 ACAAAATCACT-TATAGTCCATCCTCTTGGACTCCAATGGAGATAGCAACTGCAACTGGT 1978
| ||||||| | |||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1917 AGAAAATCA-TGTATAATCCATCCTCATGGACTCCAATGGAGATAGCAACTGCAACAGGC 1975
Query 1979 GACCCAGAGAGAACTACGGTTGAACATGCTCTGGAGCTTAAAAGCACATACTCAGAAGTG 2038
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1976 GACCCAGAGAGAACTACAGTTGAACACGCTCTGGAGCTTAAAAGCACTTACTCAGAAGTG 2035
Query 2039 GAGGGTCAAGCAAACACAAGGGATGAAAACGGAGAACCTGTAGTGACCAGTTATCACAGA 2098
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2036 GAGGGTCAAGCGAACACAAGAGATGAAAACGGAGAGCCTGTAGTGACCAGTTATCACAGA 2095
Query 2099 TGTTTCATGGGGACAGTTGACTACATATGGCGGTCGGAAGGTCTTCAAACAGTGCGTGTG 2158
|||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 2096 TGTTTCATGGGGACAGTTGACTACATATGGCGGTCGGAAGCCCTTCAGACGGTTCGTGTG 2155
Query 2159 CTTGCTCCAATACC-AAAGCAAGCAATGCAGTGGACTCCAGGCTTCCCGACTCCTAAATG 2217
|||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2156 CTTGCTCCAATACCGAAA-CAAGCAATGCAGTGGACACCAGGCTTCCCGACTCCAAAATG 2214
Query 2218 GGGAAGCGATCACATTGCACTGGTTTCAGAGTTGGCCTTCTGCAGCAGCAAAACTCTGCC 2277
||||||||||||||||||| ||||||||||||||||||| || | |||||| | || |||
Sbjct 2215 GGGAAGCGATCACATTGCATTGGTTTCAGAGTTGGCCTTTTGTACCAGCAAGAGTCCGCC 2274
Query 2278 CAAAAGCTGATATTAAACTGGTGGT 2302
||| ||||||||||||| ||||||
Sbjct 2275 TAAAGGCTGATATTAAACAGGTGGT 2299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94997071030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5