BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11350.1 Length=2520 Score E Sequences producing significant alignments: (Bits) Value Ahg940610 jgi|Araly1|940610|scaffold_601154.1 3435 0.0 > Ahg940610 jgi|Araly1|940610|scaffold_601154.1 Length=2304 Score = 3435 bits (1860), Expect = 0.0 Identities = 2161/2305 (94%), Gaps = 25/2305 (1%) Strand=Plus/Plus Query 9 AATTCGATTGACCAATGCGGCGTTCTCGTTTTGTTGCTCAAGTTTTCTCCGACG-TTACC 67 |||||||||||||||||||||||||||||||| | || |||||||||||||||| || || Sbjct 9 AATTCGATTGACCAATGCGGCGTTCTCGTTTTCTCGCCCAAGTTTTCTCCGACGCTT-CC 67 Query 68 TTCGCTGACGCCTCCACTATC-TCTGCTCCAATCTTCACCATGTCTACTCGTGCTCCGTA 126 ||| |||||| ||||||| | |||||||||||| || |||||||||||||||||||||| Sbjct 68 TTCACTGACGTATCCACTA-CTTCTGCTCCAATCGTCGCCATGTCTACTCGTGCTCCGTA 126 Query 127 CAGAGGTGCCCGAGGACGAGGACGAGGCCGAGGTGGGAGAAGTTTCTCCGATCGTCCGTA 186 |||||||| |||| | || | |||||||||| |||||||||||||||||||||||||| Sbjct 127 CAGAGGTGGCCGA-G--GA--A-GAGGCCGAGGCGGGAGAAGTTTCTCCGATCGTCCGTA 180 Query 187 CAATGATGACGC-GG--GAAGAGATCAGTTCGTTACTGGAGATTCTCATTTTCAATCAGT 243 |||| ||||||| || ||||||||||||||||||||||||| || |||||||| ||||| Sbjct 181 CAATAATGACGCAGGAAGAAGAGATCAGTTCGTTACTGGAGACTCGCATTTTCAGTCAGT 240 Query 244 TCATGACGCCAATTTCCGATTCCGGCATGGTGAACCTTATCGACAACATCAGCCTCCGCT 303 ||||||||||||| |||||||||| ||||||||| |||||||||||| ||| |||||||| Sbjct 241 TCATGACGCCAATCTCCGATTCCGACATGGTGAATCTTATCGACAACCTCAACCTCCGCT 300 Query 304 TGATCAGCGGCAGCAACCACCGTTCAATCAGAATTACGAATTTCGACCTCCGCCGCCGTC 363 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 301 AGATCAGCGGCAGCAACCACCGTTCAATCAGAATTACGAATTTCGGCCTCGGCCGCCGTC 360 Query 364 ACGAGGTCAGTGGCAACAATTCCGTCAACCTAATCAGTTT-CCGTCTAATCAAAACTACG 422 |||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||| | Sbjct 361 TCGAGGTCAGTGGCAACAATTTCGTCAACCTAATCA-TTTACCGTCCAATCAAAGCTATG 419 Query 423 CGGCTTGCCCTCCCCCTCCGTTCTATCAAAACCAGATGTCCCGGCCGCCTCCACAGCAGA 482 |||| | ||||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 420 CGGCATACCCTCCCCCTCCGTTCTATCAAAACCAAATGTCTCGGCCGCCTCCACATCAGA 479 Query 483 GCTTTCGTCAACGGCCACGGTCAAAACCTTCAGATTACCGTGAATGGGAATATGCCAAAA 542 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 480 GCTTTCGTCAACGGCCACGGTCAAAACCTTCAGATTACCGGGAATGGGAATATGCCAAAA 539 Query 543 CGCCACCGTCTCCTGGCTCCGAAAAGTTTGTTGTTTTATCGTATAATATATTGGCGGATT 602 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 540 CGCCACCGTCTCCTGGCTCCGAAAAGTTTGTTGTTTTATCGTATAATATCTTGGCGGATT 599 Query 603 ACCTTGCAAATGATCACTGGAGAAGTCTTTACTTTCACATACCGAGGAATATGTTGAGTT 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ACCTTGCAAATGATCACTGGAGAAGTCTTTACTTTCACATACCGAGGAATATGTTGAGTT 659 Query 663 GGGGATGGAGAAAGAGCAAATTAGTGTTCGAGCTTAGCCTATGGTCTGCAGATATAATGT 722 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 660 GGGGATGGAGAAAGAGCAAATTAGTGTTCGAGCTTGGCCTATGGTCTGCAGATATAATGT 719 Query 723 GCCTTCAGGAAGTTGATAAATTTCAGGACTTAGAGGAGGAGATGAAGCACCGGGGATATA 782 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 720 GCCTTCAGGAAGTTGATAAATTTCAGGATTTAGAGGAGGAGATGAAGCACCGGGGATATA 779 Query 783 GTGCTATTTGGAAGATGCGGACTGGTAATGCTGTTGACGGATGTGCAATATTTTGGCGAT 842 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 780 GTGCCATTTGGAAGATGCGGACTGGTAATGCTGTTGACGGCTGTGCAATATTTTGGCGAT 839 Query 843 CCAATAGATTCAAGTTGGTTCACGAGGAAAGCATCCAGTTCAATCAACTTGGTCTCCGAG 902 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 840 CAAATAGATTCAAGTTGGTTCACGAGGAAAGCATCCAGTTCAATCAACTTGGTCTTCGGG 899 Query 903 ATAACGTTGCTCAAATATGTGTGCTTGAGACATTGTTGACTTCACATACAAAAGAAAATG 962 |||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 900 ATAATGTTGCTCAAATATGTGTGTTTGAGACACTGTTGACTTCACATACAAAAGAAAATG 959 Query 963 AGACCCCTCCACCTGAAAGCTCTGCTGGTTCCCATCGAGTTGTCATTTGTAACATTCACG 1022 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 960 AGACCCCTCCACCTGAAAGCTCTGCTGGTTCCTGCCGAGTTGTCATTTGTAACATTCACG 1019 Query 1023 TGCTTTTTAATCCTAAAAGAGGAGACTTTAAACTTGGTCAGGTCAGAACACTCTTAGATA 1082 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1020 TGCTTTTTAATCCTAAAAGAGGAGACTTTAAACTTGGTCAGGTCAGGACACTCTTAGATA 1079 Query 1083 AAGCTCATGCTGTTTCAAAACTCTGGGATGATGCGCCTATTGTTCTTTGTGGGGATTTCA 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 AAGCTCATGCTGTTTCAAAACTCTGGGATGATGCGCCTATTGTTCTTTGTGGGGATTTCA 1139 Query 1143 ATTGTACACCAAAGAGTCCTTTGTACAACTTTATTTCAGACCGGAAGTTGGATTTGTCTG 1202 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 ATTGTACACCAAAGAGTCATTTGTACAACTTTATTTCAGACCGGAAGTTGGATTTGTCTG 1199 Query 1203 GTTTGGCCAGAGACAAAGTTTCGGGGCAAGTTTCTGCTGAGTTTCGTCCACCAAGGCCAG 1262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 GTTTGGCCAGAGACAAAGTTTCGGGGCAAGTTTCTGCTGAGTTTCGTCCACCAAGGCCAG 1259 Query 1263 AAAATTATACAACGAGGTATCAGTCCGCCAACAAATCTCCACAAGGTCAAGTTCAACCAC 1322 ||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||| || Sbjct 1260 AAAGTTATACGACGAGGTTTCAGTCCGCCAATAAATCTCCACAAGGTCAAGTTCAACTAC 1319 Query 1323 CAAATTTGATCACAAATGCTCATATGGAGAATAACTCCAACATAGATGTTGGAACGGCCC 1382 || ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1320 CAGATTCGATCACAAATGCTCATATGGAGAATAACTCCAACATAGATGTTGAAACGCCCC 1379 Query 1383 CCTCCGAGAAGACATCTGAGCTTCCATGTGGTGATACAATTCTTGCTGGTCACGAAGCCA 1442 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1380 CCTCCGAAAAGACATCTGAGCTTCCATGTGGTGATACAATTCTTGCTGCTCACGAAGCCA 1439 Query 1443 CCTCCAGCTCTGACCAAGTATTACCATGCGAGAATATGGCCTCAGATTGTCAGTTTGGAA 1502 |||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||| || Sbjct 1440 CCTCGAGCTCTGACCAAGTATTACCAGGCGAGAATATGGCCTCAGATTGTAATTTTGAAA 1499 Query 1503 TAGAAAACAGAAAACCTGATGATTCCGGGAATCTCTCGACAGCTGAAGATCTTTCTTCAC 1562 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || Sbjct 1500 TAGAAAACAGAAAACCTGATGACTCCGGGAATCTCTCGATAGCTGAAGATCTTTCTACAG 1559 Query 1563 TAACCATATCAGATACAGAACCTCAACATGCTTCCAGTGCTAGAGAAGATTTGAATACAG 1622 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 TAATTATATCAGATACAGAACCTCAACATGCTTCCAGTGCTAGAGAAGATTTGAATACAG 1619 Query 1623 ATCGTTCTGTAAGTTCCGGTTTATCAGAAACAGAGCAAACTCCTGAGGAAATATGTTCCA 1682 ||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1620 ATCATTTTGTAAGTTCGGGTTTATCAGAAACAGAGCATTCTCCTGAGGAAATATGTTCCA 1679 Query 1683 GTGATCAAGATATTTCATCTAGTCTCTCCACCAAGGTTGACACTT-TTGTGGCTGAAATG 1741 ||||||||| |||||||||||||||||||||||||||||||| | || ||||||| ||| Sbjct 1680 GTGATCAAGGTATTTCATCTAGTCTCTCCACCAAGGTTGACAATACTT-TGGCTGAGATG 1738 Query 1742 AAACTAGATGGCTTAAAATTGGACGAACCAGTAGTATTCGCGCAAGATGAAGAAAGTTT- 1800 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 1739 AAACTAGATGGCTTAAAATTGGACGAACCAGTTGTATTCGCGCAAGATGAAGAA-GTTTT 1797 Query 1801 AGGTGAAGATGGGGAAACCTTTTTGGCTAAGCTACACGATAACAATGAAAACTTGAGTCA 1860 |||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| Sbjct 1798 AGGTGAAGATGGGGAAACCTTTTTGGCTAAGCTACACGATTATAATGAAGACTTGAGTCA 1857 Query 1861 AAAAGGGGAACTTGTGAGTGAAGTTCCACTTAAAT-GGAGTTCTGAAGCTTTAAATAGTG 1919 ||||||||||||||||| ||| || ||| ||||| || ||||||||||||| |||| || Sbjct 1858 AAAAGGGGAACTTGTGAATGATTTTTCACGTAAATCGG-GTTCTGAAGCTTTTAATAATG 1916 Query 1920 ACAAAATCACT-TATAGTCCATCCTCTTGGACTCCAATGGAGATAGCAACTGCAACTGGT 1978 | ||||||| | |||| ||||||||| ||||||||||||||||||||||||||||| || Sbjct 1917 AGAAAATCA-TGTATAATCCATCCTCATGGACTCCAATGGAGATAGCAACTGCAACAGGC 1975 Query 1979 GACCCAGAGAGAACTACGGTTGAACATGCTCTGGAGCTTAAAAGCACATACTCAGAAGTG 2038 ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| Sbjct 1976 GACCCAGAGAGAACTACAGTTGAACACGCTCTGGAGCTTAAAAGCACTTACTCAGAAGTG 2035 Query 2039 GAGGGTCAAGCAAACACAAGGGATGAAAACGGAGAACCTGTAGTGACCAGTTATCACAGA 2098 ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 2036 GAGGGTCAAGCGAACACAAGAGATGAAAACGGAGAGCCTGTAGTGACCAGTTATCACAGA 2095 Query 2099 TGTTTCATGGGGACAGTTGACTACATATGGCGGTCGGAAGGTCTTCAAACAGTGCGTGTG 2158 |||||||||||||||||||||||||||||||||||||||| ||||| || || |||||| Sbjct 2096 TGTTTCATGGGGACAGTTGACTACATATGGCGGTCGGAAGCCCTTCAGACGGTTCGTGTG 2155 Query 2159 CTTGCTCCAATACC-AAAGCAAGCAATGCAGTGGACTCCAGGCTTCCCGACTCCTAAATG 2217 |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 2156 CTTGCTCCAATACCGAAA-CAAGCAATGCAGTGGACACCAGGCTTCCCGACTCCAAAATG 2214 Query 2218 GGGAAGCGATCACATTGCACTGGTTTCAGAGTTGGCCTTCTGCAGCAGCAAAACTCTGCC 2277 ||||||||||||||||||| ||||||||||||||||||| || | |||||| | || ||| Sbjct 2215 GGGAAGCGATCACATTGCATTGGTTTCAGAGTTGGCCTTTTGTACCAGCAAGAGTCCGCC 2274 Query 2278 CAAAAGCTGATATTAAACTGGTGGT 2302 ||| ||||||||||||| |||||| Sbjct 2275 TAAAGGCTGATATTAAACAGGTGGT 2299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94997071030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5